| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Helix | -12.50 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 210-C 1913 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1784-C 1911 |
| Stack | -2.40 | External closing pair is T 1785-A 1910 |
| Stack | -3.30 | External closing pair is C 1786-G 1909 |
| Stack | -2.10 | External closing pair is C 1787-G 1908 |
| Stack | -1.30 | External closing pair is T 1788-A 1907 |
| Stack | -0.60 | External closing pair is T 1789-G 1906 |
| Stack | -1.30 | External closing pair is T 1790-A 1905 |
| Helix | -13.20 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 1791-T 1904 37 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.10 | External closing pair is A 233-T 1781 |
| Stack | -1.30 | External closing pair is T 234-A 1780 |
| Stack | -2.10 | External closing pair is A 235-T 1779 |
| Stack | -3.30 | External closing pair is G 236-C 1778 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 237-C 1777 |
| Stack | -2.40 | External closing pair is T 238-A 1775 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 239-G 1774 |
| Stack | -2.40 | External closing pair is T 240-A 1772 |
| Stack | -3.30 | External closing pair is C 241-G 1771 |
| Stack | -2.10 | External closing pair is C 242-G 1770 |
| Stack | -2.10 | External closing pair is T 243-A 1769 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is G 244-C 1768 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.40 | External closing pair is T 247-A 1658 |
| Stack | -2.10 | External closing pair is C 248-G 1657 |
| Stack | -2.10 | External closing pair is T 249-A 1656 |
| Stack | -2.40 | External closing pair is G 250-C 1655 |
| Helix | -9.00 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 251-T 1654 |
| Stack | -2.20 | External closing pair is A 253-T 1651 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 254-G 1650 23 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.10 | External closing pair is T 256-A 1592 |
| Stack | -3.30 | External closing pair is G 257-C 1591 |
| Stack | -2.40 | External closing pair is G 258-C 1590 |
| Stack | -0.90 | External closing pair is A 259-T 1589 |
| Stack | -2.10 | External closing pair is A 260-T 1588 |
| Stack | -2.20 | External closing pair is G 261-C 1587 |
| Stack | -0.90 | External closing pair is T 262-A 1586 |
| Helix | -13.90 | 8 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 263-A 1585 12 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 2
seq.txt
ΔG = -819.70
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 46-C 3102 25 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -3.30 | External closing pair is C 75-G 1942 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.30 | External closing pair is C 76-G 1941 |
| Stack | -2.40 | External closing pair is T 80-A 1936 |
| Stack | -3.30 | External closing pair is C 81-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.10 | External closing pair is C 82-G 1934 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Helix | -12.50 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 210-C 1913 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1784-C 1911 |
| Stack | -2.40 | External closing pair is T 1785-A 1910 |
| Stack | -3.30 | External closing pair is C 1786-G 1909 |
| Stack | -2.10 | External closing pair is C 1787-G 1908 |
| Stack | -1.30 | External closing pair is T 1788-A 1907 |
| Stack | -0.60 | External closing pair is T 1789-G 1906 |
| Stack | -1.30 | External closing pair is T 1790-A 1905 |
| Helix | -13.20 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 1791-T 1904 37 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.10 | External closing pair is A 233-T 1781 |
| Stack | -1.30 | External closing pair is T 234-A 1780 |
| Stack | -2.10 | External closing pair is A 235-T 1779 |
| Stack | -3.30 | External closing pair is G 236-C 1778 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 237-C 1777 |
| Stack | -2.40 | External closing pair is T 238-A 1775 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 239-G 1774 |
| Stack | -2.40 | External closing pair is T 240-A 1772 |
| Stack | -3.30 | External closing pair is C 241-G 1771 |
| Stack | -2.10 | External closing pair is C 242-G 1770 |
| Stack | -2.10 | External closing pair is T 243-A 1769 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is G 244-C 1768 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.40 | External closing pair is T 247-A 1658 |
| Stack | -2.10 | External closing pair is C 248-G 1657 |
| Stack | -2.10 | External closing pair is T 249-A 1656 |
| Stack | -2.40 | External closing pair is G 250-C 1655 |
| Helix | -9.00 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 251-T 1654 |
| Stack | -2.20 | External closing pair is A 253-T 1651 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 254-G 1650 23 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.10 | External closing pair is T 256-A 1592 |
| Stack | -3.30 | External closing pair is G 257-C 1591 |
| Stack | -2.40 | External closing pair is G 258-C 1590 |
| Stack | -0.90 | External closing pair is A 259-T 1589 |
| Stack | -2.10 | External closing pair is A 260-T 1588 |
| Stack | -2.20 | External closing pair is G 261-C 1587 |
| Stack | -0.90 | External closing pair is T 262-A 1586 |
| Helix | -13.90 | 8 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 263-A 1585 12 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is T 90-A 183 |
| Stack | -2.20 | External closing pair is G 91-C 182 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 2.70 | External closing pair is T 92-A 181 |
| Stack | -1.00 | External closing pair is T 96-A 176 |
| Stack | -2.50 | External closing pair is G 97-T 175 |
| Stack | -2.10 | External closing pair is C 98-G 174 |
| Stack | -2.10 | External closing pair is T 99-A 173 |
| Helix | -7.70 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 100-C 172 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 3
seq.txt
ΔG = -819.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 211-A 1912 24 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 247-A 1907 |
| Stack | -2.10 | External closing pair is C 248-G 1906 |
| Stack | -1.00 | External closing pair is T 249-A 1905 |
| Stack | -1.30 | External closing pair is G 250-T 1904 |
| Stack | -1.10 | External closing pair is A 251-T 1903 |
| Helix | -7.90 | 6 base pairs. |
| Multi-loop | 1.10 | External closing pair is T 252-A 1902 12 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 1896 |
| Stack | -2.40 | External closing pair is T 271-A 1895 |
| Stack | -2.10 | External closing pair is C 272-G 1894 |
| Stack | -1.30 | External closing pair is T 273-A 1893 |
| Stack | -0.90 | External closing pair is A 274-T 1892 |
| Helix | -8.80 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 275-T 1891 |
| Stack | -2.40 | External closing pair is G 277-C 1889 |
| Stack | -0.90 | External closing pair is A 278-T 1888 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 1.10 | External closing pair is A 279-T 1887 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is C 285-G 1864 |
| Stack | -2.40 | External closing pair is G 286-C 1863 |
| Stack | -1.40 | External closing pair is A 287-T 1862 |
| Stack | -1.00 | External closing pair is T 288-G 1861 |
| Helix | -7.20 | 5 base pairs. |
| Interior loop | 3.80 | External closing pair is A 289-T 1860 |
| Stack | -0.50 | External closing pair is T 301-G 1849 |
| Stack | -0.60 | External closing pair is T 302-G 1848 |
| Stack | -2.40 | External closing pair is T 303-A 1847 |
| Stack | -2.10 | External closing pair is C 304-G 1846 |
| Helix | -5.60 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 305-T 1845 |
| Stack | -1.30 | External closing pair is T 307-A 1843 |
| Stack | -1.10 | External closing pair is A 308-T 1842 |
| Stack | -0.90 | External closing pair is T 309-A 1841 |
| Stack | -1.30 | External closing pair is T 310-A 1840 |
| Stack | -1.10 | External closing pair is A 311-T 1839 |
| Stack | -0.90 | External closing pair is T 312-A 1838 |
| Stack | -1.30 | External closing pair is T 313-A 1837 |
| Stack | 0.30 | External closing pair is T 314-G 1836 |
| Helix | -7.60 | 9 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 315-T 1835 |
| Stack | -2.40 | External closing pair is T 316-A 1816 |
| Stack | -2.10 | External closing pair is C 317-G 1815 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 318-A 1814 |
| Stack | -3.30 | External closing pair is C 320-G 1813 |
| Stack | -2.10 | External closing pair is C 321-G 1812 |
| Stack | -1.10 | External closing pair is A 322-T 1811 |
| Stack | -1.30 | External closing pair is T 323-A 1810 |
| Stack | -0.90 | External closing pair is A 324-T 1809 |
| Stack | -2.10 | External closing pair is A 325-T 1808 |
| Stack | -2.20 | External closing pair is G 326-C 1807 |
| Stack | -0.90 | External closing pair is T 327-A 1806 |
| Stack | -1.30 | External closing pair is T 328-A 1805 |
| Helix | -15.20 | 10 base pairs. |
| Multi-loop | 4.50 | External closing pair is T 329-G 1804 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is T 330-A 1762 |
| Stack | -2.10 | External closing pair is C 331-G 1761 |
| Stack | -0.90 | External closing pair is A 332-T 1760 |
| Stack | -0.90 | External closing pair is A 333-T 1759 |
| Stack | -2.10 | External closing pair is A 334-T 1758 |
| Stack | -2.50 | External closing pair is G 335-C 1757 |
| Stack | -1.00 | External closing pair is T 336-G 1756 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | 1.70 | External closing pair is A 337-T 1755 |
| Stack | -2.10 | External closing pair is G 339-T 1753 |
| Stack | -2.40 | External closing pair is G 340-C 1752 |
| Stack | -2.20 | External closing pair is A 341-T 1751 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is C 342-G 1750 |
| Stack | -1.10 | External closing pair is A 344-T 1747 |
| Stack | -0.90 | External closing pair is T 345-A 1746 |
| Stack | -2.40 | External closing pair is T 346-A 1745 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 347-G 1744 29 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 1116-A 1738 |
| Stack | -0.60 | External closing pair is T 1117-G 1737 |
| Stack | -2.10 | External closing pair is T 1118-A 1736 |
| Stack | -3.30 | External closing pair is G 1119-C 1735 |
| Stack | -2.40 | External closing pair is G 1120-C 1734 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1121-T 1733 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1142-G 1729 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1143-A 1728 |
| Stack | -2.10 | External closing pair is C 1145-G 1726 |
| Stack | -2.10 | External closing pair is A 1146-T 1725 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1147-C 1724 |
| Stack | -2.10 | External closing pair is A 1149-T 1723 |
| Stack | -2.40 | External closing pair is G 1150-C 1722 |
| Stack | -1.10 | External closing pair is A 1151-T 1721 |
| Stack | -1.30 | External closing pair is T 1152-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 1153-T 1719 |
| Stack | -0.90 | External closing pair is T 1154-A 1717 |
| Stack | -1.30 | External closing pair is T 1155-A 1716 |
| Stack | -1.10 | External closing pair is A 1156-T 1715 |
| Stack | -1.30 | External closing pair is T 1157-A 1714 |
| Stack | -1.10 | External closing pair is A 1158-T 1713 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 1.00 | External closing pair is T 1159-A 1712 26 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1203-G 1707 |
| Stack | -2.50 | External closing pair is G 1204-C 1706 |
| Stack | -1.40 | External closing pair is T 1205-G 1705 |
| Stack | -3.30 | External closing pair is G 1206-C 1704 |
| Helix | -9.60 | 5 base pairs. |
| Bulge loop | 3.70 | External closing pair is G 1207-C 1703 |
| Stack | -2.40 | External closing pair is T 1211-A 1702 |
| Stack | -2.10 | External closing pair is C 1212-G 1701 |
| Stack | -1.40 | External closing pair is A 1213-T 1700 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is T 1214-G 1699 |
| Stack | -2.40 | External closing pair is T 1215-A 1691 |
| Stack | -2.10 | External closing pair is C 1216-G 1690 |
| Stack | -1.00 | External closing pair is T 1217-A 1689 |
| Stack | -2.10 | External closing pair is G 1218-T 1688 |
| Stack | -3.30 | External closing pair is G 1219-C 1687 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1220-C 1686 4 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1271-G 1684 |
| Stack | -2.10 | External closing pair is A 1272-T 1683 |
| Stack | -2.40 | External closing pair is G 1273-C 1682 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is A 1274-T 1681 23 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is A 1277-T 1287 |
| Stack | -2.50 | External closing pair is G 1278-C 1286 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 1279-G 1285 |
| Stack | -0.90 | External closing pair is A 1222-T 1268 |
| Stack | -0.90 | External closing pair is A 1223-T 1267 |
| Stack | -0.60 | External closing pair is A 1224-T 1266 |
| Stack | -2.50 | External closing pair is G 1225-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -8.10 | 7 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.10 | External closing pair is C 353-G 423 |
| Stack | -0.90 | External closing pair is T 354-A 422 |
| Stack | -0.90 | External closing pair is T 355-A 421 |
| Helix | -3.90 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 356-A 420 |
| Stack | -3.40 | External closing pair is G 357-C 418 |
| Helix | -3.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 358-G 417 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.40 | External closing pair is G 258-C 267 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is A 259-T 266 |
| Stack | -1.00 | External closing pair is T 232-G 246 |
| Stack | -1.40 | External closing pair is A 233-T 245 |
| Stack | -1.00 | External closing pair is T 234-G 244 |
| Stack | -2.10 | External closing pair is A 235-T 243 |
| Stack | -3.30 | External closing pair is G 236-C 242 |
| Helix | -8.80 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 237-C 241 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 4
seq.txt
ΔG = -818.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 18 ss bases & 2 closing helices. |
| Stack | -0.90 | External closing pair is A 1837-T 3134 |
| Stack | -1.10 | External closing pair is A 1838-T 3133 |
| Stack | -1.30 | External closing pair is T 1839-A 3132 |
| Stack | -0.90 | External closing pair is A 1840-T 3131 |
| Stack | -1.10 | External closing pair is A 1841-T 3130 |
| Helix | -5.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1842-A 3129 |
| Stack | -2.10 | External closing pair is C 1844-G 3127 |
| Stack | -2.10 | External closing pair is T 1845-A 3126 |
| Stack | -2.40 | External closing pair is G 1846-C 3125 |
| Stack | -2.10 | External closing pair is A 1847-T 3124 |
| Stack | -3.30 | External closing pair is G 1848-C 3123 |
| Stack | -2.20 | External closing pair is G 1849-C 3122 |
| Stack | -0.90 | External closing pair is T 1850-A 3121 |
| Stack | -0.90 | External closing pair is T 1851-A 3120 |
| Helix | -16.00 | 9 base pairs. |
| Multi-loop | 4.60 | External closing pair is T 1852-A 3119 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1857-A 2665 |
| Stack | -2.10 | External closing pair is C 1858-G 2664 |
| Stack | -0.90 | External closing pair is T 1859-A 2663 |
| Stack | -2.10 | External closing pair is T 1860-A 2662 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is G 1861-C 2661 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.50 | External closing pair is G 1864-C 1943 |
| Stack | -1.50 | External closing pair is T 1865-G 1942 |
| Helix | -4.00 | 3 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 1866-G 1941 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1939 |
| Stack | -2.40 | External closing pair is T 1888-A 1938 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1889-G 1937 |
| Stack | -2.10 | External closing pair is C 1890-G 1935 |
| Stack | -0.60 | External closing pair is T 1891-G 1934 |
| Stack | -1.30 | External closing pair is T 1892-A 1933 |
| Stack | -0.60 | External closing pair is A 1893-T 1932 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 0.50 | External closing pair is G 1894-T 1931 |
| Stack | -0.90 | External closing pair is A 1897-T 1928 |
| Stack | -0.90 | External closing pair is A 1898-T 1927 |
| Stack | -0.90 | External closing pair is A 1899-T 1926 |
| Helix | -2.70 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 1900-T 1925 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.10 | External closing pair is T 2-A 1823 |
| Stack | -2.20 | External closing pair is G 3-C 1822 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 4-A 1821 |
| Stack | -0.90 | External closing pair is T 8-A 1817 |
| Stack | -2.40 | External closing pair is T 9-A 1816 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 10-G 1815 |
| Stack | -3.30 | External closing pair is C 11-G 1813 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 12-G 1812 |
| Stack | -1.30 | External closing pair is T 14-A 1810 |
| Stack | -0.90 | External closing pair is A 15-T 1809 |
| Helix | -2.20 | 3 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 16-T 1808 8 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 127-A 1805 |
| Stack | -3.30 | External closing pair is C 128-G 1804 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 1.40 | External closing pair is C 129-G 1803 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 1759-G 1801 |
| Stack | -1.00 | External closing pair is T 1760-A 1800 |
| Stack | -1.30 | External closing pair is G 1761-T 1799 |
| Stack | -0.60 | External closing pair is A 1762-T 1798 |
| Stack | -1.40 | External closing pair is G 1763-T 1797 |
| Stack | -0.90 | External closing pair is T 1764-A 1796 |
| Stack | -2.40 | External closing pair is T 1765-A 1795 |
| Helix | -8.20 | 8 base pairs. |
| Interior loop | 4.40 | External closing pair is C 1766-G 1794 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is G 132-C 1752 |
| Stack | -2.20 | External closing pair is A 133-T 1751 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | -0.40 | External closing pair is C 134-G 1750 |
| Stack | -2.10 | External closing pair is C 136-G 1748 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 137-T 1747 |
| Stack | -2.40 | External closing pair is T 139-A 1745 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.00 | External closing pair is C 140-G 1744 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.40 | External closing pair is C 150-G 1707 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 151-C 1706 |
| Stack | -1.40 | External closing pair is T 154-G 1705 |
| Stack | -3.30 | External closing pair is G 155-C 1704 |
| Helix | -4.70 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is G 156-C 1703 |
| Stack | -2.50 | External closing pair is G 159-T 1700 |
| Stack | -2.10 | External closing pair is C 160-G 1699 |
| Stack | -2.10 | External closing pair is T 161-A 1698 |
| Stack | -3.30 | External closing pair is G 162-C 1697 |
| Stack | -2.40 | External closing pair is G 163-C 1696 |
| Helix | -12.40 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 164-T 1695 |
| Stack | -2.40 | External closing pair is T 166-A 1691 |
| Stack | -2.10 | External closing pair is C 167-G 1690 |
| Stack | -1.30 | External closing pair is T 168-A 1689 |
| Helix | -5.80 | 4 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 169-T 1688 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 198-C 1686 |
| Stack | -3.30 | External closing pair is C 199-G 1685 |
| Stack | -1.40 | External closing pair is C 200-G 1684 |
| Stack | -2.10 | External closing pair is G 201-T 1683 |
| Stack | -2.40 | External closing pair is G 202-C 1682 |
| Helix | -12.60 | 6 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 203-T 1681 2 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -2.40 | External closing pair is G 205-C 1663 |
| Stack | -2.10 | External closing pair is A 206-T 1662 |
| Stack | -2.20 | External closing pair is G 207-C 1661 |
| Stack | -0.90 | External closing pair is T 208-A 1660 |
| Helix | -7.60 | 5 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 209-A 1659 |
| Stack | -1.30 | External closing pair is T 211-A 1658 |
| Stack | -0.60 | External closing pair is T 212-G 1657 |
| Stack | -2.10 | External closing pair is T 213-A 1656 |
| Stack | -2.40 | External closing pair is G 214-C 1655 |
| Stack | -0.90 | External closing pair is A 215-T 1654 |
| Stack | -0.90 | External closing pair is A 216-T 1653 |
| Stack | -0.90 | External closing pair is A 217-T 1652 |
| Helix | -9.10 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 218-T 1651 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 220-A 1631 |
| Stack | -3.40 | External closing pair is G 221-C 1630 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | -0.50 | External closing pair is C 222-G 1629 17 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1584-C 1627 |
| Stack | -0.90 | External closing pair is A 1585-T 1626 |
| Stack | -2.20 | External closing pair is A 1586-T 1625 |
| Helix | -5.50 | 4 base pairs. |
| Bulge loop | 5.90 | External closing pair is C 1587-G 1624 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.20 | External closing pair is G 237-C 1581 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 238-A 1580 |
| Stack | -2.40 | External closing pair is T 240-A 1578 |
| Stack | -3.30 | External closing pair is C 241-G 1577 |
| Stack | -2.10 | External closing pair is C 242-G 1576 |
| Stack | -2.10 | External closing pair is T 243-A 1575 |
| Stack | -2.20 | External closing pair is G 244-C 1574 |
| Stack | -2.10 | External closing pair is T 245-A 1573 |
| Helix | -14.20 | 7 base pairs. |
| Multi-loop | 1.10 | External closing pair is G 246-C 1572 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1554-C 1570 |
| Stack | -0.90 | External closing pair is A 1555-T 1569 |
| Stack | -1.10 | External closing pair is A 1556-T 1568 |
| Helix | -4.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1557-A 1567 |
| Stack | -2.40 | External closing pair is G 250-C 1545 |
| Stack | -1.40 | External closing pair is A 251-T 1544 |
| Stack | -1.00 | External closing pair is T 252-G 1543 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 253-T 1542 |
| Stack | -1.10 | External closing pair is A 255-T 1538 |
| Stack | -2.10 | External closing pair is T 256-A 1537 |
| Stack | -3.30 | External closing pair is G 257-C 1536 |
| Stack | -2.40 | External closing pair is G 258-C 1535 |
| Stack | -0.90 | External closing pair is A 259-T 1534 |
| Stack | -0.60 | External closing pair is A 260-T 1533 |
| Stack | -1.40 | External closing pair is G 261-T 1532 |
| Helix | -11.80 | 8 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 262-A 1531 |
| Stack | -2.20 | External closing pair is A 264-T 1530 |
| Stack | -2.10 | External closing pair is C 265-G 1529 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 266-A 1528 |
| Stack | -0.60 | External closing pair is A 268-T 1527 |
| Stack | -2.50 | External closing pair is G 269-T 1526 |
| Stack | -2.10 | External closing pair is C 270-G 1525 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 271-A 1524 |
| Stack | -1.00 | External closing pair is T 273-G 1522 |
| Stack | -0.90 | External closing pair is A 274-T 1521 |
| Stack | -0.90 | External closing pair is A 275-T 1520 |
| Helix | -2.80 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is A 276-T 1519 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -2.40 | External closing pair is G 21-C 124 |
| Stack | -1.10 | External closing pair is A 22-T 123 |
| Stack | -1.30 | External closing pair is T 23-A 122 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 24-T 121 |
| Stack | -2.50 | External closing pair is G 25-C 119 |
| Stack | -1.00 | External closing pair is T 26-G 118 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 27-T 117 |
| Stack | -2.10 | External closing pair is C 28-G 112 |
| Stack | -1.40 | External closing pair is A 29-T 111 |
| Stack | -0.60 | External closing pair is T 30-G 110 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | -2.90 | External closing pair is T 31-A 109 |
| Stack | -1.40 | External closing pair is G 34-T 106 |
| Stack | -1.30 | External closing pair is T 35-A 105 |
| Stack | -0.90 | External closing pair is A 36-T 104 |
| Stack | -0.90 | External closing pair is A 37-T 103 |
| Stack | -0.60 | External closing pair is A 38-T 102 |
| Stack | -2.50 | External closing pair is G 39-T 101 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 40-G 100 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 77-G 97 |
| Stack | -0.90 | External closing pair is A 78-T 96 |
| Stack | -1.40 | External closing pair is A 79-T 95 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is T 80-G 94 |
| Stack | -2.20 | External closing pair is A 83-T 92 |
| Stack | -1.40 | External closing pair is C 84-G 91 |
| Helix | -3.60 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 85-T 90 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 5
seq.txt
ΔG = -818.40
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Helix | -12.50 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 210-C 1913 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1784-C 1911 |
| Stack | -2.40 | External closing pair is T 1785-A 1910 |
| Stack | -3.30 | External closing pair is C 1786-G 1909 |
| Stack | -2.10 | External closing pair is C 1787-G 1908 |
| Stack | -1.30 | External closing pair is T 1788-A 1907 |
| Stack | -0.60 | External closing pair is T 1789-G 1906 |
| Stack | -1.30 | External closing pair is T 1790-A 1905 |
| Helix | -13.20 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 1791-T 1904 37 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.10 | External closing pair is A 233-T 1781 |
| Stack | -1.30 | External closing pair is T 234-A 1780 |
| Stack | -2.10 | External closing pair is A 235-T 1779 |
| Stack | -3.30 | External closing pair is G 236-C 1778 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 237-C 1777 |
| Stack | -2.40 | External closing pair is T 238-A 1775 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 239-G 1774 |
| Stack | -2.40 | External closing pair is T 240-A 1772 |
| Stack | -3.30 | External closing pair is C 241-G 1771 |
| Stack | -2.10 | External closing pair is C 242-G 1770 |
| Stack | -2.10 | External closing pair is T 243-A 1769 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is G 244-C 1768 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.40 | External closing pair is T 247-A 1658 |
| Stack | -2.10 | External closing pair is C 248-G 1657 |
| Stack | -2.10 | External closing pair is T 249-A 1656 |
| Stack | -2.40 | External closing pair is G 250-C 1655 |
| Helix | -9.00 | 5 base pairs. |
| Multi-loop | 5.10 | External closing pair is A 251-T 1654 10 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.20 | External closing pair is A 253-T 1393 |
| Stack | -2.10 | External closing pair is C 254-G 1392 |
| Stack | -1.40 | External closing pair is A 255-T 1391 |
| Stack | -1.40 | External closing pair is T 256-G 1390 |
| Stack | -3.30 | External closing pair is G 257-C 1389 |
| Stack | -2.40 | External closing pair is G 258-C 1388 |
| Stack | -0.90 | External closing pair is A 259-T 1387 |
| Helix | -13.70 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 260-T 1386 |
| Stack | -1.40 | External closing pair is G 261-T 1382 |
| Stack | -1.30 | External closing pair is T 262-A 1381 |
| Stack | -1.00 | External closing pair is T 263-G 1380 |
| Stack | -2.20 | External closing pair is A 264-T 1379 |
| Stack | -2.10 | External closing pair is C 265-G 1378 |
| Helix | -8.00 | 6 base pairs. |
| Multi-loop | 2.00 | External closing pair is T 266-A 1377 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 6
seq.txt
ΔG = -818.40
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Helix | -12.50 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 210-C 1913 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1784-C 1911 |
| Stack | -2.40 | External closing pair is T 1785-A 1910 |
| Stack | -3.30 | External closing pair is C 1786-G 1909 |
| Stack | -2.10 | External closing pair is C 1787-G 1908 |
| Stack | -1.30 | External closing pair is T 1788-A 1907 |
| Stack | -0.60 | External closing pair is T 1789-G 1906 |
| Stack | -1.30 | External closing pair is T 1790-A 1905 |
| Helix | -13.20 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 1791-T 1904 37 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.10 | External closing pair is A 233-T 1781 |
| Stack | -1.30 | External closing pair is T 234-A 1780 |
| Stack | -2.10 | External closing pair is A 235-T 1779 |
| Stack | -3.30 | External closing pair is G 236-C 1778 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 237-C 1777 |
| Stack | -2.40 | External closing pair is T 238-A 1775 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 239-G 1774 |
| Stack | -2.40 | External closing pair is T 240-A 1772 |
| Stack | -3.30 | External closing pair is C 241-G 1771 |
| Stack | -2.10 | External closing pair is C 242-G 1770 |
| Stack | -2.10 | External closing pair is T 243-A 1769 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is G 244-C 1768 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.40 | External closing pair is T 247-A 1658 |
| Stack | -2.10 | External closing pair is C 248-G 1657 |
| Stack | -2.10 | External closing pair is T 249-A 1656 |
| Stack | -2.40 | External closing pair is G 250-C 1655 |
| Helix | -9.00 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 251-T 1654 |
| Stack | -2.20 | External closing pair is A 253-T 1651 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 254-G 1650 23 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.10 | External closing pair is T 256-A 1592 |
| Stack | -3.30 | External closing pair is G 257-C 1591 |
| Stack | -2.40 | External closing pair is G 258-C 1590 |
| Stack | -0.90 | External closing pair is A 259-T 1589 |
| Stack | -2.10 | External closing pair is A 260-T 1588 |
| Stack | -2.20 | External closing pair is G 261-C 1587 |
| Stack | -0.90 | External closing pair is T 262-A 1586 |
| Helix | -13.90 | 8 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 263-A 1585 12 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 3.50 | External closing pair is T 292-A 1353 17 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -1.30 | External closing pair is T 307-A 1156 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is A 308-T 1155 |
| Stack | -1.30 | External closing pair is T 310-A 1153 |
| Stack | -1.10 | External closing pair is A 311-T 1152 |
| Stack | -1.30 | External closing pair is T 312-A 1151 |
| Stack | -0.60 | External closing pair is T 313-G 1150 |
| Stack | -2.10 | External closing pair is T 314-A 1149 |
| Stack | -2.50 | External closing pair is G 315-C 1148 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.70 | External closing pair is T 316-G 1147 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 334-T 1143 |
| Stack | -2.20 | External closing pair is G 335-C 1142 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is T 336-A 1141 |
| Stack | -3.30 | External closing pair is G 339-C 1138 |
| Stack | -2.40 | External closing pair is G 340-C 1137 |
| Stack | -2.20 | External closing pair is A 341-T 1136 |
| Stack | -2.10 | External closing pair is C 342-G 1135 |
| Stack | -0.90 | External closing pair is A 343-T 1134 |
| Stack | -1.40 | External closing pair is A 344-T 1133 |
| Stack | -0.60 | External closing pair is T 345-G 1132 |
| Stack | -2.40 | External closing pair is T 346-A 1131 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 0.70 | External closing pair is C 347-G 1130 |
| Stack | -2.10 | External closing pair is C 353-G 1125 |
| Stack | -1.30 | External closing pair is T 354-A 1124 |
| Stack | -0.60 | External closing pair is T 355-G 1123 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 356-A 1122 5 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 317-G 326 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 318-A 325 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 7
seq.txt
ΔG = -817.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.40 | 5 ss bases & 2 closing helices. |
| Stack | -0.90 | External closing pair is A 1837-T 3134 |
| Stack | -1.10 | External closing pair is A 1838-T 3133 |
| Stack | -1.30 | External closing pair is T 1839-A 3132 |
| Stack | -0.90 | External closing pair is A 1840-T 3131 |
| Stack | -1.10 | External closing pair is A 1841-T 3130 |
| Helix | -5.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1842-A 3129 |
| Stack | -2.10 | External closing pair is C 1844-G 3127 |
| Stack | -2.10 | External closing pair is T 1845-A 3126 |
| Stack | -2.40 | External closing pair is G 1846-C 3125 |
| Stack | -2.10 | External closing pair is A 1847-T 3124 |
| Stack | -3.30 | External closing pair is G 1848-C 3123 |
| Stack | -2.20 | External closing pair is G 1849-C 3122 |
| Stack | -0.90 | External closing pair is T 1850-A 3121 |
| Stack | -0.90 | External closing pair is T 1851-A 3120 |
| Helix | -16.00 | 9 base pairs. |
| Multi-loop | 4.60 | External closing pair is T 1852-A 3119 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1857-A 2665 |
| Stack | -2.10 | External closing pair is C 1858-G 2664 |
| Stack | -0.90 | External closing pair is T 1859-A 2663 |
| Stack | -2.10 | External closing pair is T 1860-A 2662 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is G 1861-C 2661 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.50 | External closing pair is G 1864-C 1943 |
| Stack | -1.50 | External closing pair is T 1865-G 1942 |
| Helix | -4.00 | 3 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 1866-G 1941 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1939 |
| Stack | -2.40 | External closing pair is T 1888-A 1938 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1889-G 1937 |
| Stack | -2.10 | External closing pair is C 1890-G 1935 |
| Stack | -0.60 | External closing pair is T 1891-G 1934 |
| Stack | -1.30 | External closing pair is T 1892-A 1933 |
| Stack | -0.60 | External closing pair is A 1893-T 1932 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 0.50 | External closing pair is G 1894-T 1931 |
| Stack | -0.90 | External closing pair is A 1897-T 1928 |
| Stack | -0.90 | External closing pair is A 1898-T 1927 |
| Stack | -0.90 | External closing pair is A 1899-T 1926 |
| Helix | -2.70 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 1900-T 1925 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -1.10 | External closing pair is A 1-T 1835 |
| Stack | -2.10 | External closing pair is T 2-A 1834 |
| Stack | -2.20 | External closing pair is G 3-C 1833 |
| Helix | -5.40 | 4 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 4-A 1832 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1815 |
| Stack | -2.40 | External closing pair is T 166-A 1814 |
| Stack | -2.10 | External closing pair is C 167-G 1813 |
| Stack | -1.00 | External closing pair is T 168-G 1812 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 3.70 | External closing pair is A 169-T 1811 |
| Stack | -2.10 | External closing pair is A 173-T 1808 |
| Stack | -2.20 | External closing pair is G 174-C 1807 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 175-A 1806 |
| Stack | -2.40 | External closing pair is T 178-A 1805 |
| Stack | -2.10 | External closing pair is C 179-G 1804 |
| Stack | -1.00 | External closing pair is T 180-G 1803 |
| Stack | -2.20 | External closing pair is A 181-T 1802 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.00 | External closing pair is C 182-G 1801 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.20 | External closing pair is A 185-T 1764 |
| Stack | -2.10 | External closing pair is C 186-G 1763 |
| Stack | -1.30 | External closing pair is T 187-A 1762 |
| Stack | -1.00 | External closing pair is T 188-G 1761 |
| Stack | -0.90 | External closing pair is A 189-T 1760 |
| Helix | -7.50 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 190-T 1759 |
| Stack | -3.40 | External closing pair is G 191-C 1757 |
| Stack | -2.10 | External closing pair is C 192-G 1756 |
| Stack | -1.10 | External closing pair is A 193-T 1755 |
| Stack | -1.30 | External closing pair is T 194-A 1754 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is A 195-T 1753 21 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.40 | External closing pair is G 198-C 1686 |
| Stack | -3.30 | External closing pair is C 199-G 1685 |
| Stack | -1.40 | External closing pair is C 200-G 1684 |
| Stack | -2.10 | External closing pair is G 201-T 1683 |
| Stack | -2.40 | External closing pair is G 202-C 1682 |
| Helix | -12.60 | 6 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 203-T 1681 2 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -2.40 | External closing pair is G 205-C 1663 |
| Stack | -2.10 | External closing pair is A 206-T 1662 |
| Stack | -2.20 | External closing pair is G 207-C 1661 |
| Stack | -0.90 | External closing pair is T 208-A 1660 |
| Helix | -7.60 | 5 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 209-A 1659 |
| Stack | -1.30 | External closing pair is T 211-A 1658 |
| Stack | -0.60 | External closing pair is T 212-G 1657 |
| Stack | -2.10 | External closing pair is T 213-A 1656 |
| Stack | -2.40 | External closing pair is G 214-C 1655 |
| Stack | -0.90 | External closing pair is A 215-T 1654 |
| Stack | -0.90 | External closing pair is A 216-T 1653 |
| Stack | -0.90 | External closing pair is A 217-T 1652 |
| Helix | -9.10 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 218-T 1651 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 220-A 1631 |
| Stack | -3.40 | External closing pair is G 221-C 1630 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | -0.50 | External closing pair is C 222-G 1629 17 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1584-C 1627 |
| Stack | -0.90 | External closing pair is A 1585-T 1626 |
| Stack | -2.20 | External closing pair is A 1586-T 1625 |
| Helix | -5.50 | 4 base pairs. |
| Bulge loop | 5.90 | External closing pair is C 1587-G 1624 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.20 | External closing pair is G 237-C 1581 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 238-A 1580 |
| Stack | -2.40 | External closing pair is T 240-A 1578 |
| Stack | -3.30 | External closing pair is C 241-G 1577 |
| Stack | -2.10 | External closing pair is C 242-G 1576 |
| Stack | -2.10 | External closing pair is T 243-A 1575 |
| Stack | -2.20 | External closing pair is G 244-C 1574 |
| Stack | -2.10 | External closing pair is T 245-A 1573 |
| Helix | -14.20 | 7 base pairs. |
| Multi-loop | 1.10 | External closing pair is G 246-C 1572 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1554-C 1570 |
| Stack | -0.90 | External closing pair is A 1555-T 1569 |
| Stack | -1.10 | External closing pair is A 1556-T 1568 |
| Helix | -4.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1557-A 1567 |
| Stack | -2.40 | External closing pair is G 250-C 1545 |
| Stack | -1.40 | External closing pair is A 251-T 1544 |
| Stack | -1.00 | External closing pair is T 252-G 1543 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 253-T 1542 |
| Stack | -1.10 | External closing pair is A 255-T 1538 |
| Stack | -2.10 | External closing pair is T 256-A 1537 |
| Stack | -3.30 | External closing pair is G 257-C 1536 |
| Stack | -2.40 | External closing pair is G 258-C 1535 |
| Stack | -0.90 | External closing pair is A 259-T 1534 |
| Stack | -0.60 | External closing pair is A 260-T 1533 |
| Stack | -1.40 | External closing pair is G 261-T 1532 |
| Helix | -11.80 | 8 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 262-A 1531 |
| Stack | -2.20 | External closing pair is A 264-T 1530 |
| Stack | -2.10 | External closing pair is C 265-G 1529 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 266-A 1528 |
| Stack | -0.60 | External closing pair is A 268-T 1527 |
| Stack | -2.50 | External closing pair is G 269-T 1526 |
| Stack | -2.10 | External closing pair is C 270-G 1525 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 271-A 1524 |
| Stack | -1.00 | External closing pair is T 273-G 1522 |
| Stack | -0.90 | External closing pair is A 274-T 1521 |
| Stack | -0.90 | External closing pair is A 275-T 1520 |
| Helix | -2.80 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is A 276-T 1519 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 5-G 162 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 6-T 161 |
| Stack | -2.10 | External closing pair is C 7-G 159 |
| Stack | -0.90 | External closing pair is T 8-A 158 |
| Stack | -2.40 | External closing pair is T 9-A 157 |
| Stack | -3.30 | External closing pair is C 10-G 156 |
| Helix | -8.70 | 5 base pairs. |
| Multi-loop | 0.90 | External closing pair is C 11-G 155 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.40 | External closing pair is G 21-C 124 |
| Stack | -1.10 | External closing pair is A 22-T 123 |
| Stack | -1.30 | External closing pair is T 23-A 122 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 24-T 121 |
| Stack | -2.50 | External closing pair is G 25-C 119 |
| Stack | -1.00 | External closing pair is T 26-G 118 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 27-T 117 |
| Stack | -2.10 | External closing pair is C 28-G 112 |
| Stack | -1.40 | External closing pair is A 29-T 111 |
| Stack | -0.60 | External closing pair is T 30-G 110 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | -2.90 | External closing pair is T 31-A 109 |
| Stack | -1.40 | External closing pair is G 34-T 106 |
| Stack | -1.30 | External closing pair is T 35-A 105 |
| Stack | -0.90 | External closing pair is A 36-T 104 |
| Stack | -0.90 | External closing pair is A 37-T 103 |
| Stack | -0.60 | External closing pair is A 38-T 102 |
| Stack | -2.50 | External closing pair is G 39-T 101 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 40-G 100 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 77-G 97 |
| Stack | -0.90 | External closing pair is A 78-T 96 |
| Stack | -1.40 | External closing pair is A 79-T 95 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is T 80-G 94 |
| Stack | -2.20 | External closing pair is A 83-T 92 |
| Stack | -1.40 | External closing pair is C 84-G 91 |
| Helix | -3.60 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 85-T 90 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 8
seq.txt
ΔG = -817.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 384-G 2030 7 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 525-C 1990 |
| Stack | -2.10 | External closing pair is C 526-G 1989 |
| Stack | -0.90 | External closing pair is A 527-T 1988 |
| Stack | -1.10 | External closing pair is A 528-T 1987 |
| Stack | -0.90 | External closing pair is T 529-A 1986 |
| Stack | -0.90 | External closing pair is T 530-A 1985 |
| Stack | -0.90 | External closing pair is T 531-A 1984 |
| Helix | -10.20 | 8 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 532-A 1983 8 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1980 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1942-C 1979 |
| Stack | -2.20 | External closing pair is A 1944-T 1976 |
| Stack | -2.10 | External closing pair is C 1945-G 1975 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1946-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 611-T 1892 |
| Stack | -0.90 | External closing pair is T 612-A 1874 |
| Stack | -1.00 | External closing pair is T 613-A 1873 |
| Stack | -2.50 | External closing pair is G 614-T 1872 |
| Stack | -3.30 | External closing pair is C 615-G 1871 |
| Helix | -7.70 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 616-G 1870 |
| Stack | -2.20 | External closing pair is G 618-C 1869 |
| Stack | -0.90 | External closing pair is T 619-A 1868 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 4.00 | External closing pair is T 620-A 1867 |
| Stack | -1.40 | External closing pair is A 623-T 1865 |
| Stack | -1.40 | External closing pair is T 624-G 1864 |
| Stack | -2.40 | External closing pair is G 625-C 1863 |
| Stack | -2.20 | External closing pair is A 626-T 1862 |
| Stack | -2.10 | External closing pair is C 627-G 1861 |
| Helix | -9.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 628-T 1860 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.30 | External closing pair is G 630-T 1789 |
| Stack | -2.10 | External closing pair is A 631-T 1788 |
| Stack | -3.30 | External closing pair is G 632-C 1787 |
| Stack | -2.40 | External closing pair is G 633-C 1786 |
| Helix | -9.10 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 634-T 1785 |
| Stack | -2.40 | External closing pair is C 639-G 1784 |
| Stack | -3.30 | External closing pair is G 640-C 1783 |
| Stack | -2.40 | External closing pair is G 641-C 1782 |
| Stack | -1.10 | External closing pair is A 642-T 1781 |
| Helix | -9.20 | 5 base pairs. |
| Interior loop | 3.10 | External closing pair is T 643-A 1780 |
| Stack | -2.20 | External closing pair is G 648-C 1773 |
| Stack | -1.30 | External closing pair is T 649-A 1772 |
| Stack | -0.50 | External closing pair is T 650-G 1771 |
| Stack | -0.60 | External closing pair is T 651-G 1770 |
| Stack | -2.10 | External closing pair is T 652-A 1769 |
| Stack | -3.30 | External closing pair is G 653-C 1768 |
| Helix | -10.00 | 7 base pairs. |
| Multi-loop | 4.00 | External closing pair is G 654-C 1767 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 676-T 1765 |
| Stack | -2.20 | External closing pair is A 677-T 1764 |
| Stack | -2.10 | External closing pair is C 678-G 1763 |
| Stack | -2.40 | External closing pair is T 679-A 1762 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is C 680-G 1761 |
| Stack | -3.40 | External closing pair is G 682-C 1757 |
| Stack | -2.10 | External closing pair is C 683-G 1756 |
| Stack | -1.10 | External closing pair is A 684-T 1755 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 685-A 1754 |
| Stack | -2.50 | External closing pair is G 686-T 1751 |
| Stack | -2.40 | External closing pair is C 687-G 1750 |
| Stack | -3.40 | External closing pair is G 688-C 1749 |
| Stack | -2.10 | External closing pair is C 689-G 1748 |
| Stack | -1.10 | External closing pair is A 690-T 1747 |
| Helix | -11.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 691-A 1746 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.30 | External closing pair is T 692-A 1716 |
| Stack | -1.10 | External closing pair is A 693-T 1715 |
| Stack | -1.30 | External closing pair is T 694-A 1714 |
| Stack | -1.10 | External closing pair is A 695-T 1713 |
| Stack | -1.30 | External closing pair is T 696-A 1712 |
| Stack | -0.60 | External closing pair is T 697-G 1711 |
| Helix | -6.70 | 7 base pairs. |
| Interior loop | 1.70 | External closing pair is T 698-A 1710 |
| Stack | -2.40 | External closing pair is T 700-A 1708 |
| Stack | -2.40 | External closing pair is C 701-G 1707 |
| Stack | -3.40 | External closing pair is G 702-C 1706 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 703-G 1705 |
| Stack | -2.20 | External closing pair is G 705-C 1703 |
| Helix | -2.20 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 706-A 1702 |
| Stack | -2.10 | External closing pair is C 708-G 1701 |
| Stack | -2.20 | External closing pair is A 709-T 1700 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 710-G 1699 14 ss bases & 5 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1696 |
| Stack | -2.10 | External closing pair is A 1649-T 1695 |
| Stack | -2.20 | External closing pair is G 1650-C 1694 |
| Stack | -0.90 | External closing pair is T 1651-A 1693 |
| Stack | -0.90 | External closing pair is T 1652-A 1692 |
| Stack | -1.30 | External closing pair is T 1653-A 1691 |
| Helix | -9.80 | 7 base pairs. |
| Bulge loop | 4.50 | External closing pair is T 1654-G 1690 |
| Stack | -2.10 | External closing pair is C 1655-G 1684 |
| Stack | -2.10 | External closing pair is A 1656-T 1683 |
| Stack | -2.40 | External closing pair is G 1657-C 1682 |
| Stack | -0.90 | External closing pair is A 1658-T 1681 |
| Helix | -7.50 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 1659-T 1680 |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1071-C 1630 |
| Stack | -2.10 | External closing pair is C 1072-G 1629 |
| Stack | -2.10 | External closing pair is T 1073-A 1628 |
| Stack | -1.50 | External closing pair is G 1074-C 1627 |
| Stack | -1.30 | External closing pair is G 1075-T 1626 |
| Helix | -10.40 | 6 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 1076-T 1625 |
| Stack | -1.00 | External closing pair is T 1080-G 1624 |
| Stack | -0.90 | External closing pair is A 1081-T 1623 |
| Stack | -2.20 | External closing pair is A 1082-T 1622 |
| Stack | -2.10 | External closing pair is C 1083-G 1621 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 1084-T 1620 |
| Stack | -2.40 | External closing pair is T 1089-A 1616 |
| Stack | -2.10 | External closing pair is C 1090-G 1615 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 0.80 | External closing pair is A 1091-T 1614 |
| Stack | -2.40 | External closing pair is G 1094-C 1611 |
| Stack | -1.10 | External closing pair is A 1095-T 1610 |
| Stack | -2.40 | External closing pair is T 1096-A 1609 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 1097-G 1608 23 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1117-A 1593 |
| Stack | -2.10 | External closing pair is T 1118-A 1592 |
| Stack | -3.30 | External closing pair is G 1119-C 1591 |
| Stack | -2.40 | External closing pair is G 1120-C 1590 |
| Stack | -0.90 | External closing pair is A 1121-T 1589 |
| Stack | -2.10 | External closing pair is A 1122-T 1588 |
| Helix | -11.70 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1123-C 1587 17 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -0.90 | External closing pair is T 720-A 1070 |
| Stack | -1.30 | External closing pair is T 721-A 1069 |
| Stack | -1.00 | External closing pair is T 722-G 1068 |
| Stack | -1.10 | External closing pair is A 723-T 1067 |
| Stack | -0.90 | External closing pair is T 724-A 1066 |
| Stack | -2.10 | External closing pair is T 725-A 1065 |
| Stack | -2.40 | External closing pair is G 726-C 1064 |
| Helix | -9.70 | 8 base pairs. |
| Interior loop | 1.70 | External closing pair is A 727-T 1063 |
| Stack | -1.30 | External closing pair is G 729-T 1061 |
| Stack | -0.90 | External closing pair is A 730-T 1060 |
| Stack | -0.90 | External closing pair is A 731-T 1059 |
| Helix | -3.10 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is A 732-T 1058 |
| Stack | -3.30 | External closing pair is G 735-C 1056 |
| Stack | -3.40 | External closing pair is G 736-C 1055 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 737-G 1054 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -1.30 | External closing pair is T 746-A 772 |
| Stack | -0.90 | External closing pair is A 747-T 771 |
| Stack | -0.60 | External closing pair is A 748-T 770 |
| Stack | -1.40 | External closing pair is G 749-T 769 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 3.70 | External closing pair is T 750-A 768 |
| Stack | -1.00 | External closing pair is T 752-A 765 |
| Stack | -2.10 | External closing pair is G 753-T 764 |
| Stack | -2.20 | External closing pair is G 754-C 763 |
| Stack | -2.40 | External closing pair is T 755-A 762 |
| Helix | -7.70 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 756-G 761 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Interior loop | -0.40 | External closing pair is T 387-A 523 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 9
seq.txt
ΔG = -816.90
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 211-A 1912 18 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -3.40 | External closing pair is G 221-C 1879 |
| Stack | -2.10 | External closing pair is C 222-G 1878 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 4.00 | External closing pair is A 223-T 1877 14 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1322-A 1875 |
| Stack | -0.90 | External closing pair is T 1323-A 1874 |
| Stack | -1.30 | External closing pair is T 1324-A 1873 |
| Stack | -2.20 | External closing pair is A 1325-T 1872 |
| Helix | -5.30 | 5 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1326-G 1871 |
| Stack | -2.40 | External closing pair is C 1328-G 1870 |
| Stack | -2.20 | External closing pair is G 1329-C 1869 |
| Stack | -0.90 | External closing pair is T 1330-A 1868 |
| Helix | -5.50 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is T 1331-A 1867 14 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1360-C 1863 |
| Stack | -2.50 | External closing pair is G 1361-T 1862 |
| Stack | -2.10 | External closing pair is C 1362-G 1861 |
| Stack | -0.90 | External closing pair is A 1363-T 1860 |
| Helix | -7.00 | 5 base pairs. |
| Multi-loop | 4.20 | External closing pair is A 1364-T 1859 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 1427-T 1850 |
| Stack | -3.30 | External closing pair is C 1428-G 1849 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1429-G 1848 |
| Stack | -2.40 | External closing pair is T 1431-A 1847 |
| Stack | -2.10 | External closing pair is C 1432-G 1846 |
| Stack | -2.10 | External closing pair is A 1433-T 1845 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is G 1434-C 1844 |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -1.30 | External closing pair is T 234-A 1318 |
| Stack | -2.10 | External closing pair is A 235-T 1317 |
| Helix | -3.40 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 236-C 1316 |
| Stack | -2.20 | External closing pair is G 237-C 1314 |
| Stack | -2.40 | External closing pair is T 238-A 1313 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 239-G 1312 24 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1291-T 1306 |
| Stack | -1.30 | External closing pair is T 1292-A 1305 |
| Stack | -2.20 | External closing pair is A 1293-T 1304 |
| Stack | -2.10 | External closing pair is C 1294-G 1303 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1295-G 1302 |
| Stack | -2.10 | External closing pair is C 242-G 1273 |
| Stack | -2.10 | External closing pair is T 243-A 1272 |
| Stack | -2.20 | External closing pair is G 244-C 1271 |
| Stack | -2.10 | External closing pair is T 245-A 1270 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 3.20 | External closing pair is G 246-C 1269 |
| Stack | -2.20 | External closing pair is A 253-T 1265 |
| Stack | -2.10 | External closing pair is C 254-G 1264 |
| Stack | -1.10 | External closing pair is A 255-T 1263 |
| Stack | -1.00 | External closing pair is T 256-A 1262 |
| Stack | -0.50 | External closing pair is G 257-T 1261 |
| Stack | -1.30 | External closing pair is G 258-T 1260 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is A 259-T 1259 |
| Stack | -2.20 | External closing pair is G 261-C 1257 |
| Stack | -0.90 | External closing pair is T 262-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 2.50 | External closing pair is T 263-A 1255 |
| Stack | -2.40 | External closing pair is T 266-A 1252 |
| Stack | -2.10 | External closing pair is C 267-G 1251 |
| Stack | -2.10 | External closing pair is A 268-T 1250 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 269-C 1249 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is G 1218-T 1247 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.00 | External closing pair is G 1219-C 1246 |
| Stack | -0.90 | External closing pair is A 1221-T 1244 |
| Stack | -0.90 | External closing pair is A 1222-T 1243 |
| Stack | -0.90 | External closing pair is A 1223-T 1242 |
| Stack | -2.10 | External closing pair is A 1224-T 1241 |
| Helix | -4.80 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1225-C 1240 |
| Stack | -1.40 | External closing pair is A 1227-T 1239 |
| Stack | -1.50 | External closing pair is T 1228-G 1238 |
| Stack | -2.10 | External closing pair is C 1229-G 1237 |
| Stack | -0.60 | External closing pair is A 1230-T 1236 |
| Helix | -5.60 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 1231-T 1235 |
| Stack | -2.40 | External closing pair is G 277-C 1212 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 278-T 1211 |
| Stack | -2.10 | External closing pair is A 279-T 1209 |
| Stack | -3.40 | External closing pair is G 280-C 1208 |
| Stack | -3.30 | External closing pair is C 281-G 1207 |
| Stack | -1.40 | External closing pair is C 282-G 1206 |
| Stack | -2.50 | External closing pair is G 283-T 1205 |
| Helix | -12.70 | 6 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 284-G 1204 30 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is C 298-G 1165 |
| Stack | -2.10 | External closing pair is C 299-G 1164 |
| Stack | -0.90 | External closing pair is T 300-A 1163 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is T 301-A 1162 |
| Stack | -1.30 | External closing pair is T 307-A 1156 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is A 308-T 1155 |
| Stack | -1.30 | External closing pair is T 310-A 1153 |
| Stack | -1.10 | External closing pair is A 311-T 1152 |
| Stack | -1.30 | External closing pair is T 312-A 1151 |
| Stack | -0.60 | External closing pair is T 313-G 1150 |
| Stack | -2.10 | External closing pair is T 314-A 1149 |
| Stack | -2.50 | External closing pair is G 315-C 1148 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.70 | External closing pair is T 316-G 1147 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 334-T 1143 |
| Stack | -2.20 | External closing pair is G 335-C 1142 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is T 336-A 1141 |
| Stack | -3.30 | External closing pair is G 339-C 1138 |
| Stack | -2.40 | External closing pair is G 340-C 1137 |
| Stack | -2.20 | External closing pair is A 341-T 1136 |
| Stack | -2.10 | External closing pair is C 342-G 1135 |
| Stack | -0.90 | External closing pair is A 343-T 1134 |
| Stack | -1.40 | External closing pair is A 344-T 1133 |
| Stack | -0.60 | External closing pair is T 345-G 1132 |
| Stack | -2.40 | External closing pair is T 346-A 1131 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 0.70 | External closing pair is C 347-G 1130 |
| Stack | -2.10 | External closing pair is C 353-G 1125 |
| Stack | -1.30 | External closing pair is T 354-A 1124 |
| Stack | -0.60 | External closing pair is T 355-G 1123 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 356-A 1122 5 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 317-G 326 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 318-A 325 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 10
seq.txt
ΔG = -816.30
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 211-A 1912 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1314-G 1908 |
| Stack | -2.40 | External closing pair is T 1315-A 1907 |
| Stack | -2.10 | External closing pair is C 1316-G 1906 |
| Stack | -1.30 | External closing pair is T 1317-A 1905 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is A 1318-T 1904 |
| Stack | -0.90 | External closing pair is T 1322-A 1900 |
| Stack | -0.90 | External closing pair is T 1323-A 1899 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1324-A 1898 |
| Stack | -2.10 | External closing pair is C 1326-G 1896 |
| Stack | -2.40 | External closing pair is T 1327-A 1895 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.00 | External closing pair is C 1328-G 1894 19 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1355-T 1885 |
| Stack | -1.30 | External closing pair is T 1356-A 1884 |
| Helix | -2.40 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 1357-T 1883 |
| Stack | -2.10 | External closing pair is T 1359-A 1881 |
| Stack | -3.30 | External closing pair is G 1360-C 1880 |
| Stack | -3.40 | External closing pair is G 1361-C 1879 |
| Stack | -2.10 | External closing pair is C 1362-G 1878 |
| Helix | -10.90 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1363-T 1877 11 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1426-A 1873 |
| Stack | -2.20 | External closing pair is A 1427-T 1872 |
| Stack | -3.30 | External closing pair is C 1428-G 1871 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 1429-G 1870 11 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1853-G 1864 |
| Stack | -2.40 | External closing pair is G 1854-C 1863 |
| Helix | -4.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 1855-T 1862 |
| Stack | -2.40 | External closing pair is T 1431-A 1847 |
| Stack | -2.10 | External closing pair is C 1432-G 1846 |
| Stack | -2.10 | External closing pair is A 1433-T 1845 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is G 1434-C 1844 |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -0.90 | External closing pair is T 1339-A 1353 |
| Stack | -0.90 | External closing pair is T 1340-A 1352 |
| Stack | -1.30 | External closing pair is T 1341-A 1351 |
| Stack | -1.10 | External closing pair is A 1342-T 1350 |
| Helix | -4.20 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 1343-A 1349 |
| Interior loop | -2.90 | External closing pair is T 212-A 1313 |
| Stack | -0.90 | External closing pair is A 215-T 1310 |
| Stack | -0.90 | External closing pair is A 216-T 1309 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 217-T 1308 |
| Stack | -1.10 | External closing pair is A 219-T 1306 |
| Stack | -1.00 | External closing pair is T 220-A 1305 |
| Stack | -2.50 | External closing pair is G 221-T 1304 |
| Helix | -4.60 | 4 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 222-G 1303 26 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.30 | External closing pair is T 234-A 1201 |
| Stack | -2.10 | External closing pair is A 235-T 1200 |
| Stack | -1.50 | External closing pair is G 236-C 1199 |
| Stack | -1.40 | External closing pair is G 237-T 1198 |
| Stack | -2.40 | External closing pair is T 238-A 1197 |
| Stack | -2.10 | External closing pair is C 239-G 1196 |
| Stack | -2.40 | External closing pair is T 240-A 1195 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 5.40 | External closing pair is C 241-G 1194 |
| Stack | -2.10 | External closing pair is T 243-A 1187 |
| Stack | -2.20 | External closing pair is G 244-C 1186 |
| Stack | -2.10 | External closing pair is T 245-A 1185 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 246-C 1184 |
| Stack | -2.40 | External closing pair is T 247-A 1181 |
| Stack | -2.10 | External closing pair is C 248-G 1180 |
| Stack | -2.10 | External closing pair is T 249-A 1179 |
| Stack | -2.40 | External closing pair is G 250-C 1178 |
| Helix | -9.00 | 5 base pairs. |
| Bulge loop | 4.50 | External closing pair is A 251-T 1177 |
| Stack | -3.30 | External closing pair is G 257-C 1176 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 258-C 1175 |
| Stack | -2.10 | External closing pair is A 260-T 1173 |
| Stack | -2.20 | External closing pair is G 261-C 1172 |
| Stack | -0.90 | External closing pair is T 262-A 1171 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 263-A 1170 25 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 298-G 1165 |
| Stack | -2.10 | External closing pair is C 299-G 1164 |
| Stack | -0.90 | External closing pair is T 300-A 1163 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is T 301-A 1162 |
| Stack | -1.30 | External closing pair is T 307-A 1156 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is A 308-T 1155 |
| Stack | -1.30 | External closing pair is T 310-A 1153 |
| Stack | -1.10 | External closing pair is A 311-T 1152 |
| Stack | -1.30 | External closing pair is T 312-A 1151 |
| Stack | -0.60 | External closing pair is T 313-G 1150 |
| Stack | -2.10 | External closing pair is T 314-A 1149 |
| Stack | -2.50 | External closing pair is G 315-C 1148 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.70 | External closing pair is T 316-G 1147 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 334-T 1143 |
| Stack | -2.20 | External closing pair is G 335-C 1142 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is T 336-A 1141 |
| Stack | -3.30 | External closing pair is G 339-C 1138 |
| Stack | -2.40 | External closing pair is G 340-C 1137 |
| Stack | -2.20 | External closing pair is A 341-T 1136 |
| Stack | -2.10 | External closing pair is C 342-G 1135 |
| Stack | -0.90 | External closing pair is A 343-T 1134 |
| Stack | -1.40 | External closing pair is A 344-T 1133 |
| Stack | -0.60 | External closing pair is T 345-G 1132 |
| Stack | -2.40 | External closing pair is T 346-A 1131 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 0.70 | External closing pair is C 347-G 1130 |
| Stack | -2.10 | External closing pair is C 353-G 1125 |
| Stack | -1.30 | External closing pair is T 354-A 1124 |
| Stack | -0.60 | External closing pair is T 355-G 1123 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 356-A 1122 5 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 317-G 326 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 318-A 325 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 11
seq.txt
ΔG = -816.20
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 384-G 2030 16 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 1329-C 2027 |
| Stack | -0.60 | External closing pair is T 1330-G 2026 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 1331-A 2025 |
| Stack | -3.30 | External closing pair is C 1333-G 2024 |
| Stack | -2.10 | External closing pair is C 1334-G 2023 |
| Stack | -0.90 | External closing pair is A 1335-T 2022 |
| Stack | -0.90 | External closing pair is A 1336-T 2021 |
| Helix | -7.20 | 5 base pairs. |
| Interior loop | 4.60 | External closing pair is A 1337-T 2020 |
| Stack | -1.10 | External closing pair is A 1346-T 2013 |
| Stack | -1.30 | External closing pair is T 1347-A 2012 |
| Stack | -1.00 | External closing pair is T 1348-G 2011 |
| Stack | -1.10 | External closing pair is A 1349-T 2010 |
| Stack | -1.30 | External closing pair is T 1350-A 2009 |
| Stack | -0.90 | External closing pair is A 1351-T 2008 |
| Helix | -6.70 | 7 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 1352-T 2007 9 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.10 | External closing pair is A 1357-T 1970 |
| Stack | -0.90 | External closing pair is T 1358-A 1969 |
| Stack | -2.10 | External closing pair is T 1359-A 1968 |
| Stack | -3.30 | External closing pair is G 1360-C 1967 |
| Stack | -3.40 | External closing pair is G 1361-C 1966 |
| Helix | -10.80 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1362-G 1965 |
| Stack | -1.10 | External closing pair is A 1364-T 1963 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1365-A 1962 |
| Stack | -2.40 | External closing pair is T 1367-A 1961 |
| Stack | -2.10 | External closing pair is C 1368-G 1960 |
| Stack | -2.10 | External closing pair is A 1369-T 1959 |
| Stack | -3.40 | External closing pair is G 1370-C 1958 |
| Helix | -10.00 | 5 base pairs. |
| Interior loop | 4.90 | External closing pair is C 1371-G 1957 |
| Stack | -0.90 | External closing pair is A 1376-T 1947 |
| Stack | -2.10 | External closing pair is A 1377-T 1946 |
| Stack | -2.20 | External closing pair is G 1378-C 1945 |
| Stack | -2.10 | External closing pair is T 1379-A 1944 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 1380-C 1943 |
| Stack | -1.50 | External closing pair is T 1382-G 1942 |
| Helix | -1.50 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1383-G 1941 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1412-G 1937 |
| Stack | -2.40 | External closing pair is T 1413-A 1936 |
| Stack | -3.30 | External closing pair is C 1414-G 1935 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 3.30 | External closing pair is C 1415-G 1934 |
| Stack | -2.50 | External closing pair is G 1416-T 1931 |
| Stack | -2.10 | External closing pair is C 1417-G 1930 |
| Stack | -1.00 | External closing pair is T 1418-A 1929 |
| Stack | -1.30 | External closing pair is G 1419-T 1928 |
| Stack | -0.90 | External closing pair is A 1420-T 1927 |
| Stack | -0.90 | External closing pair is A 1421-T 1926 |
| Helix | -8.70 | 7 base pairs. |
| Multi-loop | 3.60 | External closing pair is A 1422-T 1925 11 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1853-G 1919 |
| Stack | -2.40 | External closing pair is G 1854-C 1918 |
| Helix | -4.80 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1855-T 1917 |
| Stack | -2.10 | External closing pair is T 1860-A 1912 |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.20 | External closing pair is A 1427-T 1850 |
| Stack | -3.30 | External closing pair is C 1428-G 1849 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1429-G 1848 |
| Stack | -2.40 | External closing pair is T 1431-A 1847 |
| Stack | -2.10 | External closing pair is C 1432-G 1846 |
| Stack | -2.10 | External closing pair is A 1433-T 1845 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is G 1434-C 1844 |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.20 | External closing pair is G 385-C 1314 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | -2.90 | External closing pair is T 386-A 1313 |
| Interior loop | 3.70 | External closing pair is A 389-T 1310 |
| Stack | -1.10 | External closing pair is A 392-T 1306 |
| Stack | -1.30 | External closing pair is T 393-A 1305 |
| Stack | -2.20 | External closing pair is A 394-T 1304 |
| Stack | -3.30 | External closing pair is C 395-G 1303 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | -0.60 | External closing pair is C 396-G 1302 17 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -2.90 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 12
seq.txt
ΔG = -815.90
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 114-G 1941 7 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 272-G 1934 |
| Stack | -1.30 | External closing pair is T 273-A 1933 |
| Stack | -0.90 | External closing pair is A 274-T 1932 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 3.10 | External closing pair is A 275-T 1931 |
| Stack | -1.30 | External closing pair is G 277-T 1928 |
| Stack | -0.90 | External closing pair is A 278-T 1927 |
| Stack | -0.60 | External closing pair is A 279-T 1926 |
| Stack | -2.50 | External closing pair is G 280-T 1925 |
| Stack | -3.30 | External closing pair is C 281-G 1924 |
| Stack | -2.40 | External closing pair is C 282-G 1923 |
| Stack | -3.40 | External closing pair is G 283-C 1922 |
| Helix | -14.40 | 8 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 284-G 1921 |
| Stack | -2.40 | External closing pair is C 285-G 1919 |
| Stack | -2.40 | External closing pair is G 286-C 1918 |
| Helix | -4.80 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 287-T 1917 27 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1860-A 1912 |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -0.50 | External closing pair is T 301-G 1849 |
| Stack | -0.60 | External closing pair is T 302-G 1848 |
| Stack | -2.40 | External closing pair is T 303-A 1847 |
| Stack | -2.10 | External closing pair is C 304-G 1846 |
| Helix | -5.60 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 305-T 1845 |
| Stack | -1.30 | External closing pair is T 307-A 1843 |
| Stack | -1.10 | External closing pair is A 308-T 1842 |
| Stack | -0.90 | External closing pair is T 309-A 1841 |
| Stack | -1.30 | External closing pair is T 310-A 1840 |
| Stack | -1.10 | External closing pair is A 311-T 1839 |
| Stack | -0.90 | External closing pair is T 312-A 1838 |
| Stack | -1.30 | External closing pair is T 313-A 1837 |
| Stack | 0.30 | External closing pair is T 314-G 1836 |
| Helix | -7.60 | 9 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 315-T 1835 |
| Stack | -2.40 | External closing pair is T 316-A 1816 |
| Stack | -2.10 | External closing pair is C 317-G 1815 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 318-A 1814 |
| Stack | -3.30 | External closing pair is C 320-G 1813 |
| Stack | -2.10 | External closing pair is C 321-G 1812 |
| Stack | -1.10 | External closing pair is A 322-T 1811 |
| Stack | -1.30 | External closing pair is T 323-A 1810 |
| Stack | -0.90 | External closing pair is A 324-T 1809 |
| Stack | -2.10 | External closing pair is A 325-T 1808 |
| Stack | -2.20 | External closing pair is G 326-C 1807 |
| Stack | -0.90 | External closing pair is T 327-A 1806 |
| Stack | -1.30 | External closing pair is T 328-A 1805 |
| Helix | -15.20 | 10 base pairs. |
| Multi-loop | 4.50 | External closing pair is T 329-G 1804 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is T 330-A 1762 |
| Stack | -2.10 | External closing pair is C 331-G 1761 |
| Stack | -0.90 | External closing pair is A 332-T 1760 |
| Stack | -0.90 | External closing pair is A 333-T 1759 |
| Stack | -2.10 | External closing pair is A 334-T 1758 |
| Stack | -2.50 | External closing pair is G 335-C 1757 |
| Stack | -1.00 | External closing pair is T 336-G 1756 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | 1.70 | External closing pair is A 337-T 1755 |
| Stack | -2.10 | External closing pair is G 339-T 1753 |
| Stack | -2.40 | External closing pair is G 340-C 1752 |
| Stack | -2.20 | External closing pair is A 341-T 1751 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is C 342-G 1750 |
| Stack | -1.10 | External closing pair is A 344-T 1747 |
| Stack | -0.90 | External closing pair is T 345-A 1746 |
| Stack | -2.40 | External closing pair is T 346-A 1745 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 347-G 1744 29 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 1116-A 1738 |
| Stack | -0.60 | External closing pair is T 1117-G 1737 |
| Stack | -2.10 | External closing pair is T 1118-A 1736 |
| Stack | -3.30 | External closing pair is G 1119-C 1735 |
| Stack | -2.40 | External closing pair is G 1120-C 1734 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1121-T 1733 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1142-G 1729 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1143-A 1728 |
| Stack | -2.10 | External closing pair is C 1145-G 1726 |
| Stack | -2.10 | External closing pair is A 1146-T 1725 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1147-C 1724 |
| Stack | -2.10 | External closing pair is A 1149-T 1723 |
| Stack | -2.40 | External closing pair is G 1150-C 1722 |
| Stack | -1.10 | External closing pair is A 1151-T 1721 |
| Stack | -1.30 | External closing pair is T 1152-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 1153-T 1719 |
| Stack | -0.90 | External closing pair is T 1154-A 1717 |
| Stack | -1.30 | External closing pair is T 1155-A 1716 |
| Stack | -1.10 | External closing pair is A 1156-T 1715 |
| Stack | -1.30 | External closing pair is T 1157-A 1714 |
| Stack | -1.10 | External closing pair is A 1158-T 1713 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 1.00 | External closing pair is T 1159-A 1712 26 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1203-G 1707 |
| Stack | -2.50 | External closing pair is G 1204-C 1706 |
| Stack | -1.40 | External closing pair is T 1205-G 1705 |
| Stack | -3.30 | External closing pair is G 1206-C 1704 |
| Helix | -9.60 | 5 base pairs. |
| Bulge loop | 3.70 | External closing pair is G 1207-C 1703 |
| Stack | -2.40 | External closing pair is T 1211-A 1702 |
| Stack | -2.10 | External closing pair is C 1212-G 1701 |
| Stack | -1.40 | External closing pair is A 1213-T 1700 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is T 1214-G 1699 |
| Stack | -2.40 | External closing pair is T 1215-A 1691 |
| Stack | -2.10 | External closing pair is C 1216-G 1690 |
| Stack | -1.00 | External closing pair is T 1217-A 1689 |
| Stack | -2.10 | External closing pair is G 1218-T 1688 |
| Stack | -3.30 | External closing pair is G 1219-C 1687 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1220-C 1686 4 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1271-G 1684 |
| Stack | -2.10 | External closing pair is A 1272-T 1683 |
| Stack | -2.40 | External closing pair is G 1273-C 1682 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is A 1274-T 1681 23 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is A 1277-T 1287 |
| Stack | -2.50 | External closing pair is G 1278-C 1286 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 1279-G 1285 |
| Stack | -0.90 | External closing pair is A 1222-T 1268 |
| Stack | -0.90 | External closing pair is A 1223-T 1267 |
| Stack | -0.60 | External closing pair is A 1224-T 1266 |
| Stack | -2.50 | External closing pair is G 1225-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -8.10 | 7 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.10 | External closing pair is C 353-G 423 |
| Stack | -0.90 | External closing pair is T 354-A 422 |
| Stack | -0.90 | External closing pair is T 355-A 421 |
| Stack | -2.10 | External closing pair is T 356-A 420 |
| Helix | -6.00 | 5 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 357-C 419 |
| Bulge loop | 0.50 | External closing pair is C 358-G 417 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.40 | External closing pair is G 115-C 270 |
| Stack | -2.10 | External closing pair is C 116-G 269 |
| Stack | -2.10 | External closing pair is T 117-A 268 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is G 118-C 267 |
| Stack | -1.30 | External closing pair is T 121-A 264 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.00 | External closing pair is A 122-T 263 |
| Stack | -2.10 | External closing pair is C 124-G 261 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 125-A 260 |
| Stack | -2.40 | External closing pair is T 127-A 259 |
| Stack | -3.30 | External closing pair is C 128-G 258 |
| Stack | -1.40 | External closing pair is C 129-G 257 |
| Stack | -1.40 | External closing pair is G 130-T 256 |
| Helix | -8.50 | 5 base pairs. |
| Bulge loop | 4.90 | External closing pair is T 131-A 255 |
| Stack | -2.40 | External closing pair is G 132-C 248 |
| Stack | -2.20 | External closing pair is A 133-T 247 |
| Stack | -2.10 | External closing pair is C 134-G 246 |
| Stack | -2.20 | External closing pair is A 135-T 245 |
| Stack | -2.10 | External closing pair is C 136-G 244 |
| Helix | -11.00 | 6 base pairs. |
| Interior loop | 4.30 | External closing pair is A 137-T 243 |
| Stack | -2.20 | External closing pair is A 143-T 238 |
| Stack | -3.30 | External closing pair is C 144-G 237 |
| Stack | -2.10 | External closing pair is C 145-G 236 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 146-A 235 28 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 191-C 222 |
| Stack | -2.10 | External closing pair is C 192-G 221 |
| Stack | -1.10 | External closing pair is A 193-T 220 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is T 194-A 219 |
| Stack | -1.40 | External closing pair is C 200-G 214 |
| Stack | -0.50 | External closing pair is G 201-T 213 |
| Stack | -1.30 | External closing pair is G 202-T 212 |
| Stack | -1.40 | External closing pair is A 203-T 211 |
| Helix | -4.60 | 5 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 204-G 210 |
| Stack | -1.00 | External closing pair is T 154-A 181 |
| Stack | -2.10 | External closing pair is G 155-T 180 |
| Stack | -2.40 | External closing pair is G 156-C 179 |
| Stack | -0.90 | External closing pair is A 157-T 178 |
| Helix | -6.40 | 5 base pairs. |
| Bulge loop | 3.20 | External closing pair is A 158-T 177 |
| Stack | -2.50 | External closing pair is G 159-T 175 |
| Stack | -2.10 | External closing pair is C 160-G 174 |
| Stack | -2.10 | External closing pair is T 161-A 173 |
| Stack | -1.50 | External closing pair is G 162-C 172 |
| Helix | -8.20 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is G 163-T 171 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 13
seq.txt
ΔG = -815.60
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 384-G 2030 9 ss bases & 4 closing helices. |
| Stack | -0.60 | External closing pair is T 1887-G 2026 |
| Stack | -2.40 | External closing pair is T 1888-A 2025 |
| Stack | -3.30 | External closing pair is C 1889-G 2024 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 1890-G 2023 |
| Stack | -0.60 | External closing pair is A 1893-T 2020 |
| Stack | -1.30 | External closing pair is G 1894-T 2019 |
| Helix | -1.90 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is A 1895-T 2018 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1921-C 2016 |
| Stack | -2.40 | External closing pair is C 1922-G 2015 |
| Stack | -1.50 | External closing pair is G 1923-C 2014 |
| Stack | -1.40 | External closing pair is G 1924-T 2013 |
| Stack | -1.30 | External closing pair is T 1925-A 2012 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1926-G 2011 |
| Stack | -1.30 | External closing pair is T 1928-A 2009 |
| Stack | -0.60 | External closing pair is A 1929-T 2008 |
| Stack | -1.40 | External closing pair is G 1930-T 2007 |
| Stack | -1.30 | External closing pair is T 1931-A 2006 |
| Stack | -1.00 | External closing pair is T 1932-G 2005 |
| Helix | -5.60 | 6 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1933-T 2004 |
| Stack | -2.40 | External closing pair is G 1937-C 1995 |
| Stack | -0.90 | External closing pair is A 1938-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1939-T 1993 |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.20 | External closing pair is G 385-C 1869 |
| Stack | -0.90 | External closing pair is T 386-A 1868 |
| Stack | -2.10 | External closing pair is T 387-A 1867 |
| Stack | -2.40 | External closing pair is G 388-C 1866 |
| Stack | -2.20 | External closing pair is A 389-T 1865 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 390-G 1864 27 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1352-T 1860 |
| Stack | -2.10 | External closing pair is A 1353-T 1859 |
| Stack | -2.40 | External closing pair is G 1354-C 1858 |
| Stack | -1.10 | External closing pair is A 1355-T 1857 |
| Helix | -6.50 | 5 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1356-A 1856 |
| Stack | -1.30 | External closing pair is T 1358-A 1855 |
| Stack | -1.40 | External closing pair is T 1359-G 1854 |
| Stack | -1.50 | External closing pair is G 1360-C 1853 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 1361-T 1852 |
| Stack | -0.90 | External closing pair is A 1363-T 1851 |
| Stack | -1.40 | External closing pair is A 1364-T 1850 |
| Stack | -1.50 | External closing pair is T 1365-G 1849 |
| Stack | -2.10 | External closing pair is C 1366-G 1848 |
| Stack | -2.40 | External closing pair is T 1367-A 1847 |
| Stack | -2.10 | External closing pair is C 1368-G 1846 |
| Helix | -10.40 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1369-T 1845 29 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.30 | External closing pair is G 398-C 1334 |
| Stack | -2.20 | External closing pair is G 399-C 1333 |
| Stack | -1.30 | External closing pair is T 400-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.90 | External closing pair is A 401-T 1331 |
| Stack | -1.30 | External closing pair is T 407-A 1325 |
| Stack | -0.90 | External closing pair is A 408-T 1324 |
| Stack | -0.60 | External closing pair is A 409-T 1323 |
| Stack | -1.40 | External closing pair is G 410-T 1322 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 2.60 | External closing pair is T 411-A 1321 |
| Stack | -2.10 | External closing pair is A 414-T 1317 |
| Stack | -2.40 | External closing pair is G 415-C 1316 |
| Stack | -2.10 | External closing pair is A 416-T 1315 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 417-C 1314 |
| Stack | -2.10 | External closing pair is C 419-G 1312 |
| Stack | -0.90 | External closing pair is A 420-T 1311 |
| Stack | -0.90 | External closing pair is A 421-T 1310 |
| Stack | -0.60 | External closing pair is A 422-T 1309 |
| Helix | -4.50 | 5 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 423-T 1308 |
| Stack | -1.10 | External closing pair is A 424-T 1306 |
| Stack | -1.30 | External closing pair is T 425-A 1305 |
| Stack | -2.20 | External closing pair is A 426-T 1304 |
| Stack | -3.30 | External closing pair is C 427-G 1303 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 2.00 | External closing pair is C 428-G 1302 17 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1116-A 1298 |
| Stack | -0.90 | External closing pair is T 1117-A 1297 |
| Stack | -1.00 | External closing pair is T 1118-A 1296 |
| Stack | -2.10 | External closing pair is G 1119-T 1295 |
| Helix | -4.90 | 5 base pairs. |
| Multi-loop | -0.90 | External closing pair is G 1120-C 1294 31 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 14
seq.txt
ΔG = -815.20
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.40 | 5 ss bases & 2 closing helices. |
| Stack | -0.90 | External closing pair is A 1837-T 3134 |
| Stack | -1.10 | External closing pair is A 1838-T 3133 |
| Stack | -1.30 | External closing pair is T 1839-A 3132 |
| Stack | -0.90 | External closing pair is A 1840-T 3131 |
| Stack | -1.10 | External closing pair is A 1841-T 3130 |
| Helix | -5.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1842-A 3129 |
| Stack | -2.10 | External closing pair is C 1844-G 3127 |
| Stack | -2.10 | External closing pair is T 1845-A 3126 |
| Stack | -2.40 | External closing pair is G 1846-C 3125 |
| Stack | -2.10 | External closing pair is A 1847-T 3124 |
| Stack | -3.30 | External closing pair is G 1848-C 3123 |
| Stack | -2.20 | External closing pair is G 1849-C 3122 |
| Stack | -0.90 | External closing pair is T 1850-A 3121 |
| Stack | -0.90 | External closing pair is T 1851-A 3120 |
| Helix | -16.00 | 9 base pairs. |
| Multi-loop | 4.60 | External closing pair is T 1852-A 3119 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1857-A 2665 |
| Stack | -2.10 | External closing pair is C 1858-G 2664 |
| Stack | -0.90 | External closing pair is T 1859-A 2663 |
| Stack | -2.10 | External closing pair is T 1860-A 2662 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is G 1861-C 2661 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.50 | External closing pair is G 1864-C 1943 |
| Stack | -1.50 | External closing pair is T 1865-G 1942 |
| Helix | -4.00 | 3 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 1866-G 1941 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1939 |
| Stack | -2.40 | External closing pair is T 1888-A 1938 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1889-G 1937 |
| Stack | -2.10 | External closing pair is C 1890-G 1935 |
| Stack | -0.60 | External closing pair is T 1891-G 1934 |
| Stack | -1.30 | External closing pair is T 1892-A 1933 |
| Stack | -0.60 | External closing pair is A 1893-T 1932 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 0.50 | External closing pair is G 1894-T 1931 |
| Stack | -0.90 | External closing pair is A 1897-T 1928 |
| Stack | -0.90 | External closing pair is A 1898-T 1927 |
| Stack | -0.90 | External closing pair is A 1899-T 1926 |
| Helix | -2.70 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 1900-T 1925 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -1.10 | External closing pair is A 1-T 1835 |
| Stack | -2.10 | External closing pair is T 2-A 1834 |
| Helix | -3.20 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3-C 1833 |
| Stack | -2.40 | External closing pair is T 4-A 1831 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | -2.30 | External closing pair is C 5-G 1830 39 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1361-C 1523 |
| Stack | -2.10 | External closing pair is C 1362-G 1522 |
| Stack | -0.90 | External closing pair is A 1363-T 1521 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1364-T 1520 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.40 | External closing pair is G 21-C 1344 |
| Stack | -1.10 | External closing pair is A 22-T 1343 |
| Stack | -1.30 | External closing pair is T 23-A 1342 |
| Stack | -0.60 | External closing pair is A 24-T 1341 |
| Helix | -5.40 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is G 25-T 1340 |
| Stack | -1.10 | External closing pair is A 29-T 1338 |
| Stack | -0.90 | External closing pair is T 30-A 1337 |
| Stack | -0.90 | External closing pair is T 31-A 1336 |
| Stack | -2.10 | External closing pair is T 32-A 1335 |
| Stack | -3.30 | External closing pair is G 33-C 1334 |
| Stack | -2.20 | External closing pair is G 34-C 1333 |
| Stack | -1.30 | External closing pair is T 35-A 1332 |
| Stack | -0.90 | External closing pair is A 36-T 1331 |
| Helix | -12.70 | 9 base pairs. |
| Multi-loop | 1.30 | External closing pair is A 37-T 1330 37 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 85-C 1314 |
| Stack | -2.40 | External closing pair is T 86-A 1313 |
| Stack | -2.10 | External closing pair is C 87-G 1312 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 88-T 1311 |
| Stack | -1.40 | External closing pair is G 91-T 1308 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 92-A 1307 |
| Stack | -1.00 | External closing pair is T 93-A 1305 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 94-T 1304 |
| Bulge loop | 1.60 | External closing pair is G 97-C 1301 |
| Stack | -2.10 | External closing pair is T 99-A 1300 |
| Stack | -2.20 | External closing pair is G 100-C 1299 |
| Stack | -0.90 | External closing pair is T 101-A 1298 |
| Stack | -0.90 | External closing pair is T 102-A 1297 |
| Helix | -6.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 103-A 1296 |
| Stack | -1.30 | External closing pair is T 104-A 1293 |
| Stack | -1.10 | External closing pair is A 105-T 1292 |
| Stack | -0.90 | External closing pair is T 106-A 1291 |
| Stack | -2.10 | External closing pair is T 107-A 1290 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 108-C 1289 |
| Stack | -2.10 | External closing pair is A 109-T 1287 |
| Stack | -2.50 | External closing pair is G 110-C 1286 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is T 111-G 1285 |
| Stack | -2.50 | External closing pair is G 118-T 1279 |
| Stack | -2.10 | External closing pair is C 119-G 1278 |
| Stack | -0.90 | External closing pair is T 120-A 1277 |
| Stack | -1.30 | External closing pair is T 121-A 1276 |
| Stack | -1.10 | External closing pair is A 122-T 1275 |
| Stack | -2.40 | External closing pair is T 123-A 1274 |
| Stack | -2.10 | External closing pair is C 124-G 1273 |
| Helix | -12.40 | 8 base pairs. |
| Bulge loop | 4.10 | External closing pair is T 125-A 1272 |
| Stack | -2.20 | External closing pair is G 130-C 1271 |
| Stack | -2.10 | External closing pair is T 131-A 1270 |
| Stack | -2.40 | External closing pair is G 132-C 1269 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 4.60 | External closing pair is A 133-T 1268 27 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 189-T 1267 |
| Stack | -0.60 | External closing pair is A 190-T 1266 |
| Stack | -2.50 | External closing pair is G 191-T 1265 |
| Stack | -2.10 | External closing pair is C 192-G 1264 |
| Stack | -1.10 | External closing pair is A 193-T 1263 |
| Stack | -1.30 | External closing pair is T 194-A 1262 |
| Stack | -0.90 | External closing pair is A 195-T 1261 |
| Stack | -0.90 | External closing pair is A 196-T 1260 |
| Stack | -2.10 | External closing pair is A 197-T 1259 |
| Helix | -12.40 | 10 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 198-C 1258 12 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1223-T 1248 |
| Stack | -2.10 | External closing pair is A 1224-T 1247 |
| Stack | -3.40 | External closing pair is G 1225-C 1246 |
| Stack | -2.10 | External closing pair is C 1226-G 1245 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1227-T 1244 |
| Stack | -2.10 | External closing pair is A 1230-T 1241 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1231-C 1240 |
| Stack | -3.30 | External closing pair is C 199-G 1219 |
| Stack | -1.40 | External closing pair is C 200-G 1218 |
| Stack | -2.10 | External closing pair is G 201-T 1217 |
| Stack | -2.40 | External closing pair is G 202-C 1216 |
| Helix | -9.20 | 5 base pairs. |
| Multi-loop | 1.20 | External closing pair is A 203-T 1215 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 277-C 1212 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 278-T 1211 |
| Stack | -2.10 | External closing pair is A 279-T 1209 |
| Stack | -3.40 | External closing pair is G 280-C 1208 |
| Stack | -3.30 | External closing pair is C 281-G 1207 |
| Stack | -1.40 | External closing pair is C 282-G 1206 |
| Stack | -2.50 | External closing pair is G 283-T 1205 |
| Helix | -12.70 | 6 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 284-G 1204 30 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is C 298-G 1165 |
| Stack | -2.10 | External closing pair is C 299-G 1164 |
| Stack | -0.90 | External closing pair is T 300-A 1163 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is T 301-A 1162 |
| Stack | -1.30 | External closing pair is T 307-A 1156 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is A 308-T 1155 |
| Stack | -1.30 | External closing pair is T 310-A 1153 |
| Stack | -1.10 | External closing pair is A 311-T 1152 |
| Stack | -1.30 | External closing pair is T 312-A 1151 |
| Stack | -0.60 | External closing pair is T 313-G 1150 |
| Stack | -2.10 | External closing pair is T 314-A 1149 |
| Stack | -2.50 | External closing pair is G 315-C 1148 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.70 | External closing pair is T 316-G 1147 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 334-T 1143 |
| Stack | -2.20 | External closing pair is G 335-C 1142 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is T 336-A 1141 |
| Stack | -3.30 | External closing pair is G 339-C 1138 |
| Stack | -2.40 | External closing pair is G 340-C 1137 |
| Stack | -2.20 | External closing pair is A 341-T 1136 |
| Stack | -2.10 | External closing pair is C 342-G 1135 |
| Stack | -0.90 | External closing pair is A 343-T 1134 |
| Stack | -1.40 | External closing pair is A 344-T 1133 |
| Stack | -0.60 | External closing pair is T 345-G 1132 |
| Stack | -2.40 | External closing pair is T 346-A 1131 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 0.70 | External closing pair is C 347-G 1130 |
| Stack | -2.10 | External closing pair is C 353-G 1125 |
| Stack | -1.30 | External closing pair is T 354-A 1124 |
| Stack | -0.60 | External closing pair is T 355-G 1123 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 356-A 1122 5 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 317-G 326 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 318-A 325 |
| Stack | -2.40 | External closing pair is G 205-C 272 |
| Stack | -2.10 | External closing pair is A 206-T 271 |
| Stack | -2.50 | External closing pair is G 207-C 270 |
| Stack | -0.60 | External closing pair is T 208-G 269 |
| Stack | -2.10 | External closing pair is T 209-A 268 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 0.80 | External closing pair is G 210-C 267 |
| Stack | -1.00 | External closing pair is T 213-A 264 |
| Stack | -1.30 | External closing pair is G 214-T 263 |
| Helix | -2.30 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 215-T 262 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.20 | External closing pair is A 227-T 238 |
| Stack | -2.10 | External closing pair is C 228-G 237 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 229-G 236 |
| Stack | -1.00 | External closing pair is T 154-A 181 |
| Stack | -2.10 | External closing pair is G 155-T 180 |
| Stack | -2.40 | External closing pair is G 156-C 179 |
| Stack | -0.90 | External closing pair is A 157-T 178 |
| Helix | -6.40 | 5 base pairs. |
| Bulge loop | 3.20 | External closing pair is A 158-T 177 |
| Stack | -2.50 | External closing pair is G 159-T 175 |
| Stack | -2.10 | External closing pair is C 160-G 174 |
| Stack | -2.10 | External closing pair is T 161-A 173 |
| Stack | -1.50 | External closing pair is G 162-C 172 |
| Helix | -8.20 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is G 163-T 171 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 15
seq.txt
ΔG = -815.20
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 211-A 1912 24 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 247-A 1907 |
| Stack | -2.10 | External closing pair is C 248-G 1906 |
| Stack | -1.00 | External closing pair is T 249-A 1905 |
| Stack | -1.30 | External closing pair is G 250-T 1904 |
| Stack | -1.10 | External closing pair is A 251-T 1903 |
| Helix | -7.90 | 6 base pairs. |
| Multi-loop | 1.10 | External closing pair is T 252-A 1902 12 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 1896 |
| Stack | -2.40 | External closing pair is T 271-A 1895 |
| Stack | -2.10 | External closing pair is C 272-G 1894 |
| Stack | -1.30 | External closing pair is T 273-A 1893 |
| Stack | -0.90 | External closing pair is A 274-T 1892 |
| Helix | -8.80 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 275-T 1891 |
| Stack | -2.40 | External closing pair is G 277-C 1889 |
| Stack | -0.90 | External closing pair is A 278-T 1888 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 1.10 | External closing pair is A 279-T 1887 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is C 285-G 1864 |
| Stack | -2.40 | External closing pair is G 286-C 1863 |
| Stack | -1.40 | External closing pair is A 287-T 1862 |
| Stack | -1.00 | External closing pair is T 288-G 1861 |
| Helix | -7.20 | 5 base pairs. |
| Interior loop | 3.80 | External closing pair is A 289-T 1860 |
| Stack | -0.50 | External closing pair is T 301-G 1849 |
| Stack | -0.60 | External closing pair is T 302-G 1848 |
| Stack | -2.40 | External closing pair is T 303-A 1847 |
| Stack | -2.10 | External closing pair is C 304-G 1846 |
| Helix | -5.60 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 305-T 1845 |
| Stack | -1.30 | External closing pair is T 307-A 1843 |
| Stack | -1.10 | External closing pair is A 308-T 1842 |
| Stack | -0.90 | External closing pair is T 309-A 1841 |
| Stack | -1.30 | External closing pair is T 310-A 1840 |
| Stack | -1.10 | External closing pair is A 311-T 1839 |
| Stack | -0.90 | External closing pair is T 312-A 1838 |
| Stack | -1.30 | External closing pair is T 313-A 1837 |
| Stack | 0.30 | External closing pair is T 314-G 1836 |
| Helix | -7.60 | 9 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 315-T 1835 |
| Stack | -2.40 | External closing pair is T 316-A 1816 |
| Stack | -2.10 | External closing pair is C 317-G 1815 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 318-A 1814 |
| Stack | -3.30 | External closing pair is C 320-G 1813 |
| Stack | -2.10 | External closing pair is C 321-G 1812 |
| Stack | -1.10 | External closing pair is A 322-T 1811 |
| Stack | -1.30 | External closing pair is T 323-A 1810 |
| Stack | -0.90 | External closing pair is A 324-T 1809 |
| Stack | -2.10 | External closing pair is A 325-T 1808 |
| Stack | -2.20 | External closing pair is G 326-C 1807 |
| Helix | -13.00 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 327-A 1806 16 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is C 427-G 1804 |
| Stack | -2.10 | External closing pair is C 428-G 1803 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 429-T 1802 |
| Stack | -2.10 | External closing pair is C 431-G 1801 |
| Stack | -1.00 | External closing pair is T 432-A 1800 |
| Stack | -1.30 | External closing pair is G 433-T 1799 |
| Stack | -0.90 | External closing pair is A 434-T 1798 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 3.60 | External closing pair is A 435-T 1797 9 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1117-A 1795 |
| Stack | -1.40 | External closing pair is T 1118-G 1794 |
| Stack | -1.50 | External closing pair is G 1119-C 1793 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1120-T 1792 |
| Stack | -0.60 | External closing pair is A 1122-T 1790 |
| Stack | -1.30 | External closing pair is G 1123-T 1789 |
| Stack | -2.10 | External closing pair is A 1124-T 1788 |
| Stack | -3.30 | External closing pair is G 1125-C 1787 |
| Stack | -2.40 | External closing pair is G 1126-C 1786 |
| Stack | -2.20 | External closing pair is A 1127-T 1785 |
| Stack | -2.40 | External closing pair is C 1128-G 1784 |
| Stack | -3.30 | External closing pair is G 1129-C 1783 |
| Stack | -2.40 | External closing pair is G 1130-C 1782 |
| Helix | -20.00 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 1131-T 1781 4 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1206-C 1778 |
| Stack | -3.40 | External closing pair is G 1207-C 1777 |
| Stack | -2.10 | External closing pair is C 1208-G 1776 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is T 1209-A 1775 |
| Stack | -1.30 | External closing pair is T 1214-A 1772 |
| Stack | -1.50 | External closing pair is T 1215-G 1771 |
| Stack | -2.10 | External closing pair is C 1216-G 1770 |
| Stack | -2.10 | External closing pair is T 1217-A 1769 |
| Stack | -3.30 | External closing pair is G 1218-C 1768 |
| Stack | -3.30 | External closing pair is G 1219-C 1767 |
| Stack | -2.40 | External closing pair is G 1220-C 1766 |
| Stack | -0.90 | External closing pair is A 1221-T 1765 |
| Helix | -16.90 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 1222-T 1764 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1762 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1752-G 1761 |
| Stack | -3.40 | External closing pair is G 1225-C 1749 |
| Stack | -2.10 | External closing pair is C 1226-G 1748 |
| Stack | -1.10 | External closing pair is A 1227-T 1747 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is T 1228-A 1746 |
| Stack | -2.20 | External closing pair is G 1231-C 1743 |
| Stack | -0.90 | External closing pair is T 1232-A 1742 |
| Stack | -1.30 | External closing pair is T 1233-A 1741 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.50 | External closing pair is A 1234-T 1740 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.40 | External closing pair is G 1238-T 1713 |
| Stack | -2.40 | External closing pair is T 1239-A 1712 |
| Stack | -2.10 | External closing pair is C 1240-G 1711 |
| Stack | -0.90 | External closing pair is T 1241-A 1710 |
| Stack | -0.90 | External closing pair is T 1242-A 1709 |
| Stack | -1.30 | External closing pair is T 1243-A 1708 |
| Stack | -1.40 | External closing pair is T 1244-G 1707 |
| Stack | -3.40 | External closing pair is G 1245-C 1706 |
| Helix | -13.80 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 1246-G 1705 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1292-G 1701 |
| Stack | -2.20 | External closing pair is A 1293-T 1700 |
| Stack | -2.10 | External closing pair is C 1294-G 1699 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.80 | External closing pair is T 1295-A 1698 18 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.40 | External closing pair is T 1248-A 1274 |
| Stack | -2.10 | External closing pair is C 1249-G 1273 |
| Stack | -2.10 | External closing pair is T 1250-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1251-C 1271 |
| Stack | -0.90 | External closing pair is A 1255-T 1266 |
| Stack | -2.20 | External closing pair is A 1256-T 1265 |
| Helix | -3.10 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1257-G 1264 |
| Stack | -2.20 | External closing pair is G 1132-C 1203 |
| Stack | -0.90 | External closing pair is T 1133-A 1202 |
| Stack | -1.00 | External closing pair is T 1134-A 1201 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1135-T 1200 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1147-C 1175 |
| Stack | -2.10 | External closing pair is C 1148-G 1174 |
| Stack | -2.10 | External closing pair is A 1149-T 1173 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1150-C 1172 |
| Stack | -1.30 | External closing pair is T 1154-A 1169 |
| Stack | -1.00 | External closing pair is T 1155-G 1168 |
| Stack | -1.10 | External closing pair is A 1156-T 1167 |
| Helix | -3.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1157-A 1166 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 331-G 357 |
| Stack | -0.90 | External closing pair is A 332-T 356 |
| Stack | -0.90 | External closing pair is A 333-T 355 |
| Stack | -2.10 | External closing pair is A 334-T 354 |
| Stack | -2.20 | External closing pair is G 335-C 353 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 1.20 | External closing pair is T 336-A 352 |
| Stack | -2.40 | External closing pair is G 340-C 347 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 341-T 346 |
| Stack | -2.40 | External closing pair is G 258-C 267 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 4.90 | Closing pair is A 259-T 266 |
| Stack | -1.00 | External closing pair is T 232-G 246 |
| Stack | -1.40 | External closing pair is A 233-T 245 |
| Stack | -1.00 | External closing pair is T 234-G 244 |
| Stack | -2.10 | External closing pair is A 235-T 243 |
| Stack | -3.30 | External closing pair is G 236-C 242 |
| Helix | -8.80 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 237-C 241 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 16
seq.txt
ΔG = -814.90
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 384-G 2030 7 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 525-C 1990 |
| Stack | -2.10 | External closing pair is C 526-G 1989 |
| Stack | -0.90 | External closing pair is A 527-T 1988 |
| Stack | -1.10 | External closing pair is A 528-T 1987 |
| Stack | -0.90 | External closing pair is T 529-A 1986 |
| Stack | -0.90 | External closing pair is T 530-A 1985 |
| Stack | -0.90 | External closing pair is T 531-A 1984 |
| Helix | -10.20 | 8 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 532-A 1983 8 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1980 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1942-C 1979 |
| Stack | -2.20 | External closing pair is A 1944-T 1976 |
| Stack | -2.10 | External closing pair is C 1945-G 1975 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1946-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 611-T 1892 10 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1119-C 1890 |
| Stack | -2.40 | External closing pair is G 1120-C 1889 |
| Stack | -0.90 | External closing pair is A 1121-T 1888 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 0.30 | External closing pair is A 1122-T 1887 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is G 1126-C 1866 |
| Stack | -2.20 | External closing pair is A 1127-T 1865 |
| Stack | -2.40 | External closing pair is C 1128-G 1864 |
| Stack | -1.50 | External closing pair is G 1129-C 1863 |
| Helix | -8.50 | 5 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1130-T 1862 16 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 1163-T 1860 |
| Stack | -2.10 | External closing pair is G 1164-T 1859 |
| Stack | -2.40 | External closing pair is G 1165-C 1858 |
| Stack | -1.10 | External closing pair is A 1166-T 1857 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 1167-A 1856 |
| Stack | -2.50 | External closing pair is G 1174-T 1850 |
| Stack | -3.30 | External closing pair is C 1175-G 1849 |
| Stack | -2.10 | External closing pair is C 1176-G 1848 |
| Stack | -2.40 | External closing pair is T 1177-A 1847 |
| Stack | -2.10 | External closing pair is C 1178-G 1846 |
| Stack | -2.10 | External closing pair is A 1179-T 1845 |
| Helix | -14.50 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1180-C 1844 23 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is G 1196-C 1437 |
| Stack | -1.10 | External closing pair is A 1197-T 1436 |
| Stack | -2.40 | External closing pair is T 1198-A 1435 |
| Stack | -2.10 | External closing pair is C 1199-G 1434 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 0.10 | External closing pair is T 1200-A 1433 18 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1429 |
| Stack | -2.20 | External closing pair is G 1303-C 1428 |
| Stack | -1.30 | External closing pair is T 1304-A 1427 |
| Stack | -1.10 | External closing pair is A 1305-T 1426 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1306-A 1425 27 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -1.40 | External closing pair is G 1329-T 1365 |
| Stack | -0.90 | External closing pair is T 1330-A 1364 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1363 |
| Stack | -3.30 | External closing pair is C 1333-G 1361 |
| Stack | -2.10 | External closing pair is C 1334-G 1360 |
| Stack | -0.90 | External closing pair is A 1335-T 1359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1336-T 1358 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.50 | External closing pair is G 1132-C 1148 |
| Stack | -0.60 | External closing pair is T 1133-G 1147 |
| Stack | -2.10 | External closing pair is T 1134-A 1146 |
| Stack | -2.20 | External closing pair is G 1135-C 1145 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 5.90 | Closing pair is T 1136-A 1144 |
| Stack | -2.10 | External closing pair is C 616-G 1113 |
| Stack | -2.10 | External closing pair is T 617-A 1112 |
| Stack | -2.20 | External closing pair is G 618-C 1111 |
| Stack | -1.30 | External closing pair is T 619-A 1110 |
| Stack | -0.60 | External closing pair is T 620-G 1109 |
| Helix | -8.30 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 621-A 1108 |
| Stack | -1.10 | External closing pair is A 623-T 1106 |
| Stack | -2.10 | External closing pair is T 624-A 1105 |
| Stack | -2.40 | External closing pair is G 625-C 1104 |
| Stack | -2.20 | External closing pair is A 626-T 1103 |
| Helix | -7.80 | 5 base pairs. |
| Multi-loop | -0.80 | External closing pair is C 627-G 1102 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 641-C 1097 |
| Stack | -1.10 | External closing pair is A 642-T 1096 |
| Stack | -2.40 | External closing pair is T 643-A 1095 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 644-G 1094 26 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is T 714-A 1076 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 715-G 1075 |
| Stack | -2.10 | External closing pair is C 717-G 1074 |
| Stack | -2.10 | External closing pair is A 718-T 1073 |
| Stack | -2.50 | External closing pair is G 719-C 1072 |
| Stack | -0.60 | External closing pair is T 720-G 1071 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 721-A 1070 |
| Stack | -1.00 | External closing pair is T 722-G 1068 |
| Stack | -1.10 | External closing pair is A 723-T 1067 |
| Stack | -0.90 | External closing pair is T 724-A 1066 |
| Stack | -2.10 | External closing pair is T 725-A 1065 |
| Stack | -2.40 | External closing pair is G 726-C 1064 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 727-T 1063 |
| Stack | -1.30 | External closing pair is G 729-T 1061 |
| Stack | -0.90 | External closing pair is A 730-T 1060 |
| Stack | -0.90 | External closing pair is A 731-T 1059 |
| Helix | -3.10 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is A 732-T 1058 |
| Stack | -3.30 | External closing pair is G 735-C 1056 |
| Stack | -3.40 | External closing pair is G 736-C 1055 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 737-G 1054 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -1.30 | External closing pair is T 746-A 772 |
| Stack | -0.90 | External closing pair is A 747-T 771 |
| Stack | -0.60 | External closing pair is A 748-T 770 |
| Stack | -1.40 | External closing pair is G 749-T 769 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 3.70 | External closing pair is T 750-A 768 |
| Stack | -1.00 | External closing pair is T 752-A 765 |
| Stack | -2.10 | External closing pair is G 753-T 764 |
| Stack | -2.20 | External closing pair is G 754-C 763 |
| Stack | -2.40 | External closing pair is T 755-A 762 |
| Helix | -7.70 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 756-G 761 |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.10 | External closing pair is A 647-T 679 |
| Stack | -2.20 | External closing pair is G 648-C 678 |
| Stack | -0.90 | External closing pair is T 649-A 677 |
| Stack | -0.90 | External closing pair is T 650-A 676 |
| Helix | -6.10 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 651-A 675 |
| Stack | -1.50 | External closing pair is G 653-C 674 |
| Helix | -1.50 | 2 base pairs. |
| Interior loop | 2.70 | External closing pair is G 654-T 673 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -2.40 | External closing pair is G 630-C 639 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 4.30 | Closing pair is A 631-T 638 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Interior loop | -0.40 | External closing pair is T 387-A 523 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 17
seq.txt
ΔG = -814.90
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Bulge loop | 5.20 | External closing pair is T 361-G 2222 |
| Stack | -3.30 | External closing pair is C 362-G 2213 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 363-G 2212 |
| Stack | -1.30 | External closing pair is T 365-A 2210 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 366-G 2209 |
| Stack | -2.10 | External closing pair is T 369-A 2206 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.80 | External closing pair is G 370-C 2205 |
| Stack | -2.20 | External closing pair is G 373-C 2204 |
| Stack | -0.90 | External closing pair is T 374-A 2203 |
| Stack | -1.30 | External closing pair is T 375-A 2202 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 376-T 2201 |
| Stack | -2.20 | External closing pair is A 380-T 2198 |
| Stack | -2.10 | External closing pair is C 381-G 2197 |
| Stack | -2.10 | External closing pair is A 382-T 2196 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 383-C 2195 |
| Stack | -2.10 | External closing pair is T 384-A 2193 |
| Stack | -2.20 | External closing pair is G 385-C 2192 |
| Stack | -0.90 | External closing pair is T 386-A 2191 |
| Stack | -2.10 | External closing pair is T 387-A 2190 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 388-C 2189 |
| Stack | -2.20 | External closing pair is A 389-T 2187 |
| Stack | -3.30 | External closing pair is C 390-G 2186 |
| Stack | -2.10 | External closing pair is C 391-G 2185 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 392-T 2184 |
| Stack | -1.00 | External closing pair is T 393-G 2182 |
| Stack | -2.20 | External closing pair is A 394-T 2181 |
| Stack | -3.30 | External closing pair is C 395-G 2180 |
| Stack | -2.10 | External closing pair is C 396-G 2179 |
| Stack | -2.10 | External closing pair is A 397-T 2178 |
| Helix | -10.70 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 398-C 2177 26 ss bases & 4 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.20 | External closing pair is G 410-C 2109 |
| Stack | -2.10 | External closing pair is T 411-A 2108 |
| Stack | -2.40 | External closing pair is G 412-C 2107 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 413-T 2106 |
| Stack | -1.30 | External closing pair is G 415-T 2104 |
| Stack | -2.10 | External closing pair is A 416-T 2103 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 4.20 | External closing pair is G 417-C 2102 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -3.30 | External closing pair is C 418-G 2078 |
| Stack | -2.10 | External closing pair is C 419-G 2077 |
| Stack | -0.90 | External closing pair is A 420-T 2076 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 421-T 2075 |
| Stack | -1.40 | External closing pair is A 424-T 2072 |
| Stack | -1.00 | External closing pair is T 425-G 2071 |
| Stack | -2.20 | External closing pair is A 426-T 2070 |
| Stack | -3.30 | External closing pair is C 427-G 2069 |
| Stack | -2.10 | External closing pair is C 428-G 2068 |
| Stack | -0.90 | External closing pair is A 429-T 2067 |
| Stack | -2.20 | External closing pair is A 430-T 2066 |
| Stack | -2.10 | External closing pair is C 431-G 2065 |
| Stack | -2.10 | External closing pair is T 432-A 2064 |
| Helix | -17.30 | 10 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 433-C 2063 14 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 2059 |
| Stack | -2.10 | External closing pair is T 1955-A 2058 |
| Stack | -3.30 | External closing pair is G 1956-C 2057 |
| Stack | -3.40 | External closing pair is G 1957-C 2056 |
| Helix | -9.70 | 5 base pairs. |
| Interior loop | 2.30 | External closing pair is C 1958-G 2055 |
| Stack | -1.10 | External closing pair is A 1962-T 2052 |
| Helix | -1.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1963-A 2051 |
| Stack | -3.40 | External closing pair is G 1965-C 2049 |
| Stack | -3.30 | External closing pair is C 1966-G 2048 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 1967-G 2047 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2011-C 2046 |
| Stack | -1.10 | External closing pair is A 2012-T 2045 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2013-A 2044 |
| Stack | -2.50 | External closing pair is G 2015-T 2042 |
| Stack | -1.40 | External closing pair is C 2016-G 2041 |
| Stack | -1.40 | External closing pair is G 2017-T 2040 |
| Stack | -0.90 | External closing pair is T 2018-A 2039 |
| Stack | -0.90 | External closing pair is T 2019-A 2038 |
| Stack | -0.90 | External closing pair is T 2020-A 2037 |
| Stack | -1.30 | External closing pair is T 2021-A 2036 |
| Stack | 0.30 | External closing pair is T 2022-G 2035 |
| Helix | -9.00 | 9 base pairs. |
| Interior loop | -0.40 | External closing pair is G 2023-T 2034 |
| Stack | -2.10 | External closing pair is A 2025-T 2032 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 2026-C 2031 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.10 | External closing pair is A 438-T 1946 |
| Stack | -2.20 | External closing pair is G 439-C 1945 |
| Stack | -2.10 | External closing pair is T 440-A 1944 |
| Stack | -2.50 | External closing pair is G 441-C 1943 |
| Stack | -1.50 | External closing pair is T 442-G 1942 |
| Stack | -2.10 | External closing pair is C 443-G 1941 |
| Helix | -12.50 | 7 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 444-A 1940 4 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 611-T 1892 |
| Stack | -0.90 | External closing pair is T 612-A 1874 |
| Stack | -1.00 | External closing pair is T 613-A 1873 |
| Stack | -2.50 | External closing pair is G 614-T 1872 |
| Stack | -3.30 | External closing pair is C 615-G 1871 |
| Helix | -7.70 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 616-G 1870 |
| Stack | -2.20 | External closing pair is G 618-C 1869 |
| Stack | -0.90 | External closing pair is T 619-A 1868 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 4.00 | External closing pair is T 620-A 1867 |
| Stack | -1.40 | External closing pair is A 623-T 1865 |
| Stack | -1.40 | External closing pair is T 624-G 1864 |
| Stack | -2.40 | External closing pair is G 625-C 1863 |
| Stack | -2.20 | External closing pair is A 626-T 1862 |
| Stack | -2.10 | External closing pair is C 627-G 1861 |
| Helix | -9.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 628-T 1860 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.30 | External closing pair is G 630-T 1789 |
| Stack | -2.10 | External closing pair is A 631-T 1788 |
| Stack | -3.30 | External closing pair is G 632-C 1787 |
| Stack | -2.40 | External closing pair is G 633-C 1786 |
| Helix | -9.10 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 634-T 1785 |
| Stack | -2.40 | External closing pair is C 639-G 1784 |
| Stack | -3.30 | External closing pair is G 640-C 1783 |
| Stack | -2.40 | External closing pair is G 641-C 1782 |
| Stack | -1.10 | External closing pair is A 642-T 1781 |
| Helix | -9.20 | 5 base pairs. |
| Interior loop | 3.10 | External closing pair is T 643-A 1780 |
| Stack | -2.20 | External closing pair is G 648-C 1773 |
| Stack | -1.30 | External closing pair is T 649-A 1772 |
| Stack | -0.50 | External closing pair is T 650-G 1771 |
| Stack | -0.60 | External closing pair is T 651-G 1770 |
| Stack | -2.10 | External closing pair is T 652-A 1769 |
| Stack | -3.30 | External closing pair is G 653-C 1768 |
| Helix | -10.00 | 7 base pairs. |
| Multi-loop | 4.00 | External closing pair is G 654-C 1767 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 676-T 1765 |
| Stack | -2.20 | External closing pair is A 677-T 1764 |
| Stack | -2.10 | External closing pair is C 678-G 1763 |
| Stack | -2.40 | External closing pair is T 679-A 1762 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is C 680-G 1761 |
| Stack | -3.40 | External closing pair is G 682-C 1757 |
| Stack | -2.10 | External closing pair is C 683-G 1756 |
| Stack | -1.10 | External closing pair is A 684-T 1755 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 685-A 1754 |
| Stack | -2.50 | External closing pair is G 686-T 1751 |
| Stack | -2.40 | External closing pair is C 687-G 1750 |
| Stack | -3.40 | External closing pair is G 688-C 1749 |
| Stack | -2.10 | External closing pair is C 689-G 1748 |
| Stack | -1.10 | External closing pair is A 690-T 1747 |
| Helix | -11.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 691-A 1746 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.30 | External closing pair is T 692-A 1716 |
| Stack | -1.10 | External closing pair is A 693-T 1715 |
| Stack | -1.30 | External closing pair is T 694-A 1714 |
| Stack | -1.10 | External closing pair is A 695-T 1713 |
| Stack | -1.30 | External closing pair is T 696-A 1712 |
| Stack | -0.60 | External closing pair is T 697-G 1711 |
| Helix | -6.70 | 7 base pairs. |
| Interior loop | 1.70 | External closing pair is T 698-A 1710 |
| Stack | -2.40 | External closing pair is T 700-A 1708 |
| Stack | -2.40 | External closing pair is C 701-G 1707 |
| Stack | -3.40 | External closing pair is G 702-C 1706 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 703-G 1705 |
| Stack | -2.20 | External closing pair is G 705-C 1703 |
| Helix | -2.20 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 706-A 1702 |
| Stack | -2.10 | External closing pair is C 708-G 1701 |
| Stack | -2.20 | External closing pair is A 709-T 1700 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 710-G 1699 14 ss bases & 5 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1696 |
| Stack | -2.10 | External closing pair is A 1649-T 1695 |
| Stack | -2.20 | External closing pair is G 1650-C 1694 |
| Stack | -0.90 | External closing pair is T 1651-A 1693 |
| Stack | -0.90 | External closing pair is T 1652-A 1692 |
| Stack | -1.30 | External closing pair is T 1653-A 1691 |
| Helix | -9.80 | 7 base pairs. |
| Bulge loop | 4.50 | External closing pair is T 1654-G 1690 |
| Stack | -2.10 | External closing pair is C 1655-G 1684 |
| Stack | -2.10 | External closing pair is A 1656-T 1683 |
| Stack | -2.40 | External closing pair is G 1657-C 1682 |
| Stack | -0.90 | External closing pair is A 1658-T 1681 |
| Helix | -7.50 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 1659-T 1680 |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1071-C 1630 |
| Stack | -2.10 | External closing pair is C 1072-G 1629 |
| Stack | -2.10 | External closing pair is T 1073-A 1628 |
| Stack | -1.50 | External closing pair is G 1074-C 1627 |
| Stack | -1.30 | External closing pair is G 1075-T 1626 |
| Helix | -10.40 | 6 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 1076-T 1625 |
| Stack | -1.00 | External closing pair is T 1080-G 1624 |
| Stack | -0.90 | External closing pair is A 1081-T 1623 |
| Stack | -2.20 | External closing pair is A 1082-T 1622 |
| Stack | -2.10 | External closing pair is C 1083-G 1621 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 1084-T 1620 |
| Stack | -2.40 | External closing pair is T 1089-A 1616 |
| Stack | -2.10 | External closing pair is C 1090-G 1615 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 0.80 | External closing pair is A 1091-T 1614 |
| Stack | -2.40 | External closing pair is G 1094-C 1611 |
| Stack | -1.10 | External closing pair is A 1095-T 1610 |
| Stack | -2.40 | External closing pair is T 1096-A 1609 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 1097-G 1608 23 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1117-A 1593 |
| Stack | -2.10 | External closing pair is T 1118-A 1592 |
| Stack | -3.30 | External closing pair is G 1119-C 1591 |
| Stack | -2.40 | External closing pair is G 1120-C 1590 |
| Stack | -0.90 | External closing pair is A 1121-T 1589 |
| Stack | -2.10 | External closing pair is A 1122-T 1588 |
| Helix | -11.70 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1123-C 1587 17 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -0.90 | External closing pair is T 720-A 1070 |
| Stack | -1.30 | External closing pair is T 721-A 1069 |
| Stack | -1.00 | External closing pair is T 722-G 1068 |
| Stack | -1.10 | External closing pair is A 723-T 1067 |
| Stack | -0.90 | External closing pair is T 724-A 1066 |
| Stack | -2.10 | External closing pair is T 725-A 1065 |
| Stack | -2.40 | External closing pair is G 726-C 1064 |
| Helix | -9.70 | 8 base pairs. |
| Interior loop | 1.70 | External closing pair is A 727-T 1063 |
| Stack | -1.30 | External closing pair is G 729-T 1061 |
| Stack | -0.90 | External closing pair is A 730-T 1060 |
| Stack | -0.90 | External closing pair is A 731-T 1059 |
| Helix | -3.10 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is A 732-T 1058 |
| Stack | -3.30 | External closing pair is G 735-C 1056 |
| Stack | -3.40 | External closing pair is G 736-C 1055 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 737-G 1054 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -1.30 | External closing pair is T 746-A 772 |
| Stack | -0.90 | External closing pair is A 747-T 771 |
| Stack | -0.60 | External closing pair is A 748-T 770 |
| Stack | -1.40 | External closing pair is G 749-T 769 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 3.70 | External closing pair is T 750-A 768 |
| Stack | -1.00 | External closing pair is T 752-A 765 |
| Stack | -2.10 | External closing pair is G 753-T 764 |
| Stack | -2.20 | External closing pair is G 754-C 763 |
| Stack | -2.40 | External closing pair is T 755-A 762 |
| Helix | -7.70 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 756-G 761 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -2.40 | External closing pair is G 445-C 533 |
| Stack | -0.90 | External closing pair is A 446-T 532 |
| Stack | -0.90 | External closing pair is A 447-T 531 |
| Stack | -0.90 | External closing pair is A 448-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 449-T 529 14 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 18
seq.txt
ΔG = -813.90
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Helix | -12.50 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 210-C 1913 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1784-C 1911 |
| Stack | -2.40 | External closing pair is T 1785-A 1910 |
| Stack | -3.30 | External closing pair is C 1786-G 1909 |
| Stack | -2.10 | External closing pair is C 1787-G 1908 |
| Stack | -1.30 | External closing pair is T 1788-A 1907 |
| Stack | -0.60 | External closing pair is T 1789-G 1906 |
| Stack | -1.30 | External closing pair is T 1790-A 1905 |
| Helix | -13.20 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 1791-T 1904 37 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.10 | External closing pair is A 233-T 1781 |
| Stack | -1.30 | External closing pair is T 234-A 1780 |
| Stack | -2.10 | External closing pair is A 235-T 1779 |
| Stack | -3.30 | External closing pair is G 236-C 1778 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 237-C 1777 |
| Stack | -2.40 | External closing pair is T 238-A 1775 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 239-G 1774 |
| Stack | -2.40 | External closing pair is T 240-A 1772 |
| Stack | -3.30 | External closing pair is C 241-G 1771 |
| Stack | -2.10 | External closing pair is C 242-G 1770 |
| Stack | -2.10 | External closing pair is T 243-A 1769 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is G 244-C 1768 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.40 | External closing pair is T 247-A 1658 |
| Stack | -2.10 | External closing pair is C 248-G 1657 |
| Stack | -2.10 | External closing pair is T 249-A 1656 |
| Stack | -2.40 | External closing pair is G 250-C 1655 |
| Helix | -9.00 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 251-T 1654 |
| Stack | -2.20 | External closing pair is A 253-T 1651 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 254-G 1650 23 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.10 | External closing pair is T 256-A 1592 |
| Stack | -3.30 | External closing pair is G 257-C 1591 |
| Stack | -2.40 | External closing pair is G 258-C 1590 |
| Stack | -0.90 | External closing pair is A 259-T 1589 |
| Stack | -2.10 | External closing pair is A 260-T 1588 |
| Stack | -2.20 | External closing pair is G 261-C 1587 |
| Stack | -0.90 | External closing pair is T 262-A 1586 |
| Helix | -13.90 | 8 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 263-A 1585 12 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 292-A 1353 60 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Helix | -5.50 | 4 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1243 |
| Stack | -0.60 | External closing pair is A 338-T 1242 |
| Stack | -2.10 | External closing pair is G 339-T 1241 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -8.20 | 6 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 371-T 1211 13 ss bases & 3 closing helices. |
| Bulge loop | 0.40 | External closing pair is G 1002-C 1208 |
| Stack | -2.10 | External closing pair is C 1004-G 1207 |
| Stack | -1.00 | External closing pair is T 1005-G 1206 |
| Stack | -2.20 | External closing pair is A 1006-T 1205 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1007-G 1204 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1014-C 1175 |
| Helix | -3.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1015-G 1174 |
| Stack | -2.10 | External closing pair is A 1017-T 1173 |
| Stack | -2.20 | External closing pair is G 1018-C 1172 |
| Stack | -0.90 | External closing pair is T 1019-A 1171 |
| Stack | -0.90 | External closing pair is T 1020-A 1170 |
| Stack | -1.30 | External closing pair is T 1021-A 1169 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.60 | External closing pair is T 1022-G 1168 |
| Stack | -2.10 | External closing pair is C 1026-G 1164 |
| Stack | -0.90 | External closing pair is T 1027-A 1163 |
| Stack | -1.00 | External closing pair is T 1028-A 1162 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 4.80 | External closing pair is G 1029-T 1161 |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is T 379-A 997 |
| Stack | -2.20 | External closing pair is A 380-T 996 |
| Stack | -2.10 | External closing pair is C 381-G 995 |
| Stack | -2.10 | External closing pair is A 382-T 994 |
| Helix | -7.70 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 383-C 993 |
| Stack | -1.40 | External closing pair is G 385-T 990 |
| Stack | -0.90 | External closing pair is T 386-A 989 |
| Stack | -2.10 | External closing pair is T 387-A 988 |
| Stack | -2.40 | External closing pair is G 388-C 987 |
| Stack | -2.20 | External closing pair is A 389-T 986 |
| Stack | -3.30 | External closing pair is C 390-G 985 |
| Stack | -2.10 | External closing pair is C 391-G 984 |
| Helix | -14.40 | 8 base pairs. |
| Interior loop | 2.00 | External closing pair is A 392-T 983 |
| Stack | -3.30 | External closing pair is C 395-G 980 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 396-G 979 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 433-C 976 |
| Stack | -0.90 | External closing pair is A 434-T 975 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 435-T 974 |
| Stack | -1.40 | External closing pair is G 439-T 972 |
| Stack | -2.10 | External closing pair is T 440-A 971 |
| Stack | -2.20 | External closing pair is G 441-C 970 |
| Stack | -2.40 | External closing pair is T 442-A 969 |
| Stack | -2.10 | External closing pair is C 443-G 968 |
| Helix | -10.20 | 6 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 444-A 967 8 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 498-C 965 |
| Stack | -2.10 | External closing pair is C 499-G 964 |
| Stack | -1.10 | External closing pair is A 500-T 963 |
| Stack | -1.30 | External closing pair is T 501-A 962 |
| Stack | -0.90 | External closing pair is A 502-T 961 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 503-T 960 5 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 524-T 957 |
| Stack | -3.40 | External closing pair is G 525-C 956 |
| Stack | -2.10 | External closing pair is C 526-G 955 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 527-T 954 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 573-G 953 |
| Stack | -1.10 | External closing pair is A 574-T 952 |
| Stack | -2.40 | External closing pair is T 575-A 951 |
| Stack | -3.30 | External closing pair is C 576-G 950 |
| Helix | -8.90 | 5 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 577-G 949 18 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 582-A 871 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -15.30 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -9.20 | 6 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -3.30 | External closing pair is G 398-C 419 |
| Stack | -2.50 | External closing pair is G 399-C 418 |
| Helix | -5.80 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 400-G 417 |
| Stack | -2.10 | External closing pair is C 402-G 415 |
| Stack | -0.90 | External closing pair is T 403-A 414 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 404-A 413 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 19
seq.txt
ΔG = -813.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 384-G 2030 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1694-G 2026 |
| Stack | -2.40 | External closing pair is T 1695-A 2025 |
| Stack | -3.30 | External closing pair is C 1696-G 2024 |
| Stack | -2.10 | External closing pair is C 1697-G 2023 |
| Stack | -0.60 | External closing pair is A 1698-T 2022 |
| Helix | -10.50 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1699-T 2021 |
| Stack | -1.30 | External closing pair is G 1701-T 2019 |
| Stack | -2.20 | External closing pair is A 1702-T 2018 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 1703-G 2017 |
| Stack | -3.40 | External closing pair is G 1705-C 2016 |
| Stack | -2.40 | External closing pair is C 1706-G 2015 |
| Stack | -2.40 | External closing pair is G 1707-C 2014 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1708-T 2013 |
| Stack | -1.00 | External closing pair is T 1713-G 2011 |
| Stack | -1.10 | External closing pair is A 1714-T 2010 |
| Stack | -1.30 | External closing pair is T 1715-A 2009 |
| Stack | -0.90 | External closing pair is A 1716-T 2008 |
| Stack | -1.10 | External closing pair is A 1717-T 2007 |
| Stack | -1.30 | External closing pair is T 1718-A 2006 |
| Stack | -1.00 | External closing pair is T 1719-G 2005 |
| Stack | -1.10 | External closing pair is A 1720-T 2004 |
| Helix | -8.80 | 9 base pairs. |
| Interior loop | 4.70 | External closing pair is T 1721-A 2003 |
| Stack | -2.40 | External closing pair is T 1723-A 1998 |
| Stack | -2.10 | External closing pair is C 1724-G 1997 |
| Stack | -2.10 | External closing pair is T 1725-A 1996 |
| Stack | -2.40 | External closing pair is G 1726-C 1995 |
| Stack | -0.90 | External closing pair is A 1727-T 1994 |
| Stack | -2.10 | External closing pair is A 1728-T 1993 |
| Helix | -12.00 | 7 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 1729-C 1992 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 1733-A 1936 |
| Stack | -3.30 | External closing pair is C 1734-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 1735-G 1934 19 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is T 1755-G 1923 |
| Stack | -3.40 | External closing pair is G 1756-C 1922 |
| Helix | -4.80 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 1757-G 1921 |
| Stack | -1.40 | External closing pair is T 1760-G 1919 |
| Stack | -2.40 | External closing pair is G 1761-C 1918 |
| Stack | -2.10 | External closing pair is A 1762-T 1917 |
| Stack | -2.20 | External closing pair is G 1763-C 1916 |
| Stack | -0.90 | External closing pair is T 1764-A 1915 |
| Helix | -9.00 | 6 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1765-A 1914 11 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 1860-A 1912 |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.20 | External closing pair is A 1742-T 1751 |
| Stack | -2.40 | External closing pair is C 1743-G 1750 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1744-C 1749 |
| Stack | -3.30 | External closing pair is C 395-G 1685 |
| Stack | -2.10 | External closing pair is C 396-G 1684 |
| Stack | -2.10 | External closing pair is A 397-T 1683 |
| Stack | -1.50 | External closing pair is G 398-C 1682 |
| Helix | -9.00 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is G 399-T 1681 30 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.20 | External closing pair is A 401-T 1279 |
| Stack | -2.10 | External closing pair is C 402-G 1278 |
| Stack | -0.90 | External closing pair is T 403-A 1277 |
| Stack | -1.30 | External closing pair is T 404-A 1276 |
| Stack | -1.10 | External closing pair is A 405-T 1275 |
| Stack | -1.30 | External closing pair is T 406-A 1274 |
| Helix | -8.90 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 407-G 1273 |
| Stack | -2.20 | External closing pair is G 410-C 1271 |
| Stack | -2.10 | External closing pair is T 411-A 1270 |
| Stack | -2.40 | External closing pair is G 412-C 1269 |
| Stack | -0.90 | External closing pair is A 413-T 1268 |
| Helix | -7.60 | 5 base pairs. |
| Bulge loop | 6.50 | External closing pair is A 414-T 1267 |
| Stack | -1.30 | External closing pair is G 415-T 1248 |
| Stack | -2.10 | External closing pair is A 416-T 1247 |
| Stack | -3.40 | External closing pair is G 417-C 1246 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is C 418-G 1245 |
| Stack | -0.90 | External closing pair is A 420-T 1243 |
| Stack | -0.90 | External closing pair is A 421-T 1242 |
| Stack | -2.10 | External closing pair is A 422-T 1241 |
| Stack | -2.40 | External closing pair is G 423-C 1240 |
| Stack | -1.40 | External closing pair is A 424-T 1239 |
| Helix | -7.70 | 6 base pairs. |
| Interior loop | 3.00 | External closing pair is T 425-G 1238 |
| Stack | -0.90 | External closing pair is A 429-T 1233 |
| Stack | -2.20 | External closing pair is A 430-T 1232 |
| Stack | -2.10 | External closing pair is C 431-G 1231 |
| Stack | -2.10 | External closing pair is T 432-A 1230 |
| Stack | -2.40 | External closing pair is G 433-C 1229 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 4.20 | External closing pair is A 434-T 1228 12 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is T 1136-A 1221 |
| Stack | -3.30 | External closing pair is C 1137-G 1220 |
| Stack | -3.30 | External closing pair is C 1138-G 1219 |
| Stack | -2.10 | External closing pair is C 1139-G 1218 |
| Helix | -11.10 | 5 base pairs. |
| Interior loop | 6.20 | External closing pair is A 1140-T 1217 |
| Stack | -2.10 | External closing pair is C 1142-G 1207 |
| Stack | -1.00 | External closing pair is T 1143-G 1206 |
| Stack | -2.20 | External closing pair is A 1144-T 1205 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1145-G 1204 8 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1147-C 1175 |
| Stack | -2.10 | External closing pair is C 1148-G 1174 |
| Stack | -2.10 | External closing pair is A 1149-T 1173 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1150-C 1172 |
| Stack | -1.30 | External closing pair is T 1154-A 1169 |
| Stack | -1.00 | External closing pair is T 1155-G 1168 |
| Stack | -1.10 | External closing pair is A 1156-T 1167 |
| Helix | -3.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1157-A 1166 |
| Stack | -1.30 | External closing pair is G 1113-T 1134 |
| Stack | -2.20 | External closing pair is A 1114-T 1133 |
| Stack | -2.10 | External closing pair is C 1115-G 1132 |
| Stack | -1.30 | External closing pair is T 1116-A 1131 |
| Stack | -0.50 | External closing pair is T 1117-G 1130 |
| Stack | -1.40 | External closing pair is T 1118-G 1129 |
| Helix | -8.80 | 7 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 1119-C 1128 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 20
seq.txt
ΔG = -813.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 3.40 | External closing pair is T 92-G 2680 5 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1589-A 2676 |
| Stack | -3.30 | External closing pair is C 1590-G 2675 |
| Stack | -2.10 | External closing pair is C 1591-G 2674 |
| Stack | -0.90 | External closing pair is A 1592-T 2673 |
| Stack | -2.20 | External closing pair is A 1593-T 2672 |
| Stack | -3.30 | External closing pair is C 1594-G 2671 |
| Stack | -2.10 | External closing pair is C 1595-G 2670 |
| Helix | -16.30 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is A 1596-T 2669 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1624-C 2667 |
| Stack | -0.90 | External closing pair is T 1625-A 2666 |
| Stack | -2.40 | External closing pair is T 1626-A 2665 |
| Helix | -5.50 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 1627-G 2664 18 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1629-T 1668 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1630-G 1667 6 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1663 |
| Stack | -2.10 | External closing pair is A 1649-T 1662 |
| Stack | -2.20 | External closing pair is G 1650-C 1661 |
| Stack | -0.90 | External closing pair is T 1651-A 1660 |
| Stack | -0.90 | External closing pair is T 1652-A 1659 |
| Helix | -8.50 | 6 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1653-A 1658 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.20 | External closing pair is G 94-C 1587 |
| Stack | -0.90 | External closing pair is T 95-A 1586 |
| Helix | -3.10 | 3 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 96-A 1585 4 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 237-C 1581 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 238-A 1580 |
| Stack | -2.40 | External closing pair is T 240-A 1578 |
| Stack | -3.30 | External closing pair is C 241-G 1577 |
| Stack | -2.10 | External closing pair is C 242-G 1576 |
| Stack | -2.10 | External closing pair is T 243-A 1575 |
| Stack | -2.20 | External closing pair is G 244-C 1574 |
| Stack | -2.10 | External closing pair is T 245-A 1573 |
| Helix | -14.20 | 7 base pairs. |
| Multi-loop | 1.10 | External closing pair is G 246-C 1572 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1554-C 1570 |
| Stack | -0.90 | External closing pair is A 1555-T 1569 |
| Stack | -1.10 | External closing pair is A 1556-T 1568 |
| Helix | -4.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1557-A 1567 |
| Stack | -2.40 | External closing pair is G 250-C 1545 |
| Stack | -1.40 | External closing pair is A 251-T 1544 |
| Stack | -1.00 | External closing pair is T 252-G 1543 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 253-T 1542 |
| Stack | -1.10 | External closing pair is A 255-T 1538 |
| Stack | -2.10 | External closing pair is T 256-A 1537 |
| Stack | -3.30 | External closing pair is G 257-C 1536 |
| Stack | -2.40 | External closing pair is G 258-C 1535 |
| Stack | -0.90 | External closing pair is A 259-T 1534 |
| Stack | -0.60 | External closing pair is A 260-T 1533 |
| Stack | -1.40 | External closing pair is G 261-T 1532 |
| Helix | -11.80 | 8 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 262-A 1531 |
| Stack | -2.20 | External closing pair is A 264-T 1530 |
| Stack | -2.10 | External closing pair is C 265-G 1529 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 266-A 1528 |
| Stack | -0.60 | External closing pair is A 268-T 1527 |
| Stack | -2.50 | External closing pair is G 269-T 1526 |
| Stack | -2.10 | External closing pair is C 270-G 1525 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 271-A 1524 |
| Stack | -1.00 | External closing pair is T 273-G 1522 |
| Stack | -0.90 | External closing pair is A 274-T 1521 |
| Stack | -0.90 | External closing pair is A 275-T 1520 |
| Helix | -2.80 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is A 276-T 1519 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -2.10 | External closing pair is C 98-G 236 |
| Stack | -1.00 | External closing pair is T 99-A 235 |
| Stack | -1.40 | External closing pair is G 100-T 234 |
| Helix | -4.50 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is T 101-A 233 |
| Stack | -1.30 | External closing pair is T 104-A 230 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 105-T 229 |
| Stack | -2.10 | External closing pair is T 107-A 227 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 0.40 | External closing pair is G 108-C 226 |
| Stack | -2.20 | External closing pair is G 110-C 224 |
| Stack | -2.10 | External closing pair is T 111-A 223 |
| Stack | -3.40 | External closing pair is G 112-C 222 |
| Helix | -7.70 | 4 base pairs. |
| Multi-loop | 2.00 | External closing pair is C 113-G 221 17 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is G 163-T 209 |
| Stack | -2.20 | External closing pair is A 164-T 208 |
| Stack | -2.10 | External closing pair is C 165-G 207 |
| Stack | -2.40 | External closing pair is T 166-A 206 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is C 167-G 205 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 191-C 199 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 192-G 198 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 21
seq.txt
ΔG = -813.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 67-C 2934 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 629-A 2930 |
| Stack | -2.40 | External closing pair is G 630-C 2929 |
| Stack | -2.10 | External closing pair is A 631-T 2928 |
| Stack | -3.30 | External closing pair is G 632-C 2927 |
| Stack | -2.40 | External closing pair is G 633-C 2926 |
| Helix | -12.30 | 6 base pairs. |
| Multi-loop | -0.80 | External closing pair is A 634-T 2925 16 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 641-C 2730 |
| Stack | -1.40 | External closing pair is A 642-T 2729 |
| Stack | -1.50 | External closing pair is T 643-G 2728 |
| Stack | -2.10 | External closing pair is C 644-G 2727 |
| Stack | -0.90 | External closing pair is A 645-T 2726 |
| Stack | -0.90 | External closing pair is A 646-T 2725 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 647-T 2724 8 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 680-G 2719 |
| Stack | -2.10 | External closing pair is T 681-A 2718 |
| Stack | -3.40 | External closing pair is G 682-C 2717 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is C 683-G 2716 |
| Stack | -2.10 | External closing pair is T 685-A 2714 |
| Stack | -3.40 | External closing pair is G 686-C 2713 |
| Stack | -2.40 | External closing pair is C 687-G 2712 |
| Stack | -3.40 | External closing pair is G 688-C 2711 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 689-G 2710 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.30 | External closing pair is T 692-A 1160 |
| Stack | -1.10 | External closing pair is A 693-T 1159 |
| Stack | -1.30 | External closing pair is T 694-A 1158 |
| Stack | -1.10 | External closing pair is A 695-T 1157 |
| Helix | -4.80 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 696-A 1156 |
| Stack | -1.30 | External closing pair is T 698-A 1153 |
| Stack | -1.10 | External closing pair is A 699-T 1152 |
| Stack | -2.40 | External closing pair is T 700-A 1151 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 701-G 1150 |
| Stack | -3.40 | External closing pair is G 702-C 1148 |
| Stack | -2.10 | External closing pair is C 703-G 1147 |
| Stack | -2.10 | External closing pair is T 704-A 1146 |
| Stack | -2.20 | External closing pair is G 705-C 1145 |
| Stack | -1.30 | External closing pair is T 706-A 1144 |
| Helix | -11.10 | 6 base pairs. |
| Interior loop | 6.10 | External closing pair is A 707-T 1143 |
| Stack | -2.20 | External closing pair is A 709-T 1136 |
| Stack | -2.10 | External closing pair is C 710-G 1135 |
| Stack | -0.90 | External closing pair is A 711-T 1134 |
| Stack | -2.20 | External closing pair is A 712-T 1133 |
| Stack | -2.10 | External closing pair is C 713-G 1132 |
| Stack | -2.40 | External closing pair is T 714-A 1131 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | 2.50 | External closing pair is C 715-G 1130 |
| Stack | -1.30 | External closing pair is T 720-A 1124 |
| Stack | -0.60 | External closing pair is T 721-G 1123 |
| Helix | -1.90 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 722-A 1122 |
| Interior loop | -2.90 | External closing pair is T 724-G 1120 |
| Stack | -0.90 | External closing pair is A 727-T 1117 |
| Stack | -2.10 | External closing pair is A 728-T 1116 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | -0.60 | External closing pair is G 729-C 1115 32 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -3.30 | External closing pair is C 733-G 1075 |
| Stack | -1.40 | External closing pair is C 734-G 1074 |
| Stack | -2.10 | External closing pair is G 735-T 1073 |
| Stack | -3.40 | External closing pair is G 736-C 1072 |
| Stack | -2.10 | External closing pair is C 737-G 1071 |
| Stack | -0.90 | External closing pair is T 738-A 1070 |
| Stack | -2.40 | External closing pair is T 739-A 1069 |
| Helix | -15.60 | 8 base pairs. |
| Interior loop | 1.10 | External closing pair is C 740-G 1068 |
| Stack | -0.90 | External closing pair is T 742-A 1066 |
| Helix | -0.90 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 743-A 1065 |
| Stack | -1.30 | External closing pair is T 746-A 1062 |
| Stack | -0.90 | External closing pair is A 747-T 1061 |
| Stack | -0.60 | External closing pair is A 748-T 1060 |
| Helix | -2.80 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is G 749-T 1059 |
| Stack | -2.10 | External closing pair is T 752-A 1057 |
| Stack | -3.30 | External closing pair is G 753-C 1056 |
| Stack | -2.50 | External closing pair is G 754-C 1055 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 755-G 1054 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -2.10 | External closing pair is T 759-A 768 |
| Stack | -3.30 | External closing pair is G 760-C 767 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 761-C 766 |
| Stack | -0.90 | External closing pair is T 650-A 677 |
| Stack | -0.90 | External closing pair is T 651-A 676 |
| Stack | -2.10 | External closing pair is T 652-A 675 |
| Stack | -1.50 | External closing pair is G 653-C 674 |
| Helix | -5.40 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 654-T 673 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -2.20 | External closing pair is G 85-C 627 |
| Stack | -2.40 | External closing pair is T 86-A 626 |
| Stack | -2.10 | External closing pair is C 87-G 625 |
| Stack | -1.10 | External closing pair is A 88-T 624 |
| Stack | -0.90 | External closing pair is T 89-A 623 |
| Stack | -1.00 | External closing pair is T 90-A 622 |
| Helix | -9.70 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is G 91-T 621 48 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -1.00 | External closing pair is T 96-A 176 |
| Stack | -2.50 | External closing pair is G 97-T 175 |
| Stack | -2.10 | External closing pair is C 98-G 174 |
| Stack | -2.10 | External closing pair is T 99-A 173 |
| Helix | -7.70 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 100-C 172 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 22
seq.txt
ΔG = -813.30
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Interior loop | 3.30 | External closing pair is G 67-C 2934 |
| Stack | -2.40 | External closing pair is G 69-C 2929 |
| Stack | -2.10 | External closing pair is A 70-T 2928 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is G 71-C 2927 |
| Stack | -3.30 | External closing pair is C 76-G 2924 |
| Stack | -2.10 | External closing pair is C 77-G 2923 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 78-T 2922 |
| Stack | -2.20 | External closing pair is A 83-T 2918 |
| Stack | -2.40 | External closing pair is C 84-G 2917 |
| Stack | -2.50 | External closing pair is G 85-C 2916 |
| Stack | -1.50 | External closing pair is T 86-G 2915 |
| Helix | -8.60 | 5 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 87-G 2914 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 883-C 2913 |
| Stack | -2.10 | External closing pair is A 884-T 2912 |
| Stack | -1.50 | External closing pair is G 885-C 2911 |
| Helix | -6.00 | 4 base pairs. |
| Interior loop | 5.20 | External closing pair is G 886-T 2910 |
| Stack | -2.40 | External closing pair is T 894-A 2906 |
| Stack | -2.10 | External closing pair is C 895-G 2905 |
| Stack | -0.90 | External closing pair is A 896-T 2904 |
| Stack | -2.10 | External closing pair is A 897-T 2903 |
| Helix | -7.50 | 5 base pairs. |
| Interior loop | 1.20 | External closing pair is G 898-C 2902 |
| Stack | -3.30 | External closing pair is G 901-C 2898 |
| Stack | -2.50 | External closing pair is G 902-C 2897 |
| Stack | -1.40 | External closing pair is T 903-G 2896 |
| Stack | -3.40 | External closing pair is G 904-C 2895 |
| Stack | -3.30 | External closing pair is C 905-G 2894 |
| Stack | -2.10 | External closing pair is C 906-G 2893 |
| Helix | -16.00 | 7 base pairs. |
| Interior loop | 3.00 | External closing pair is T 907-G 2892 |
| Stack | -2.40 | External closing pair is T 914-A 2885 |
| Stack | -3.30 | External closing pair is C 915-G 2884 |
| Stack | -1.40 | External closing pair is C 916-G 2883 |
| Helix | -7.10 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is G 917-T 2882 |
| Stack | -1.30 | External closing pair is G 919-T 2880 |
| Stack | -2.20 | External closing pair is A 920-T 2879 |
| Helix | -3.50 | 3 base pairs. |
| Multi-loop | 1.40 | External closing pair is C 921-G 2878 6 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 2827-T 2874 |
| Stack | -1.50 | External closing pair is T 2828-G 2873 |
| Stack | -2.10 | External closing pair is C 2829-G 2872 |
| Stack | -1.50 | External closing pair is T 2830-G 2871 |
| Stack | -2.10 | External closing pair is C 2831-G 2870 |
| Stack | -1.40 | External closing pair is T 2832-G 2869 |
| Stack | -2.50 | External closing pair is G 2833-C 2868 |
| Stack | -0.50 | External closing pair is T 2834-G 2867 |
| Helix | -13.00 | 9 base pairs. |
| Interior loop | 3.60 | External closing pair is T 2835-G 2866 |
| Stack | -1.00 | External closing pair is T 2840-A 2860 |
| Stack | -2.50 | External closing pair is G 2841-T 2859 |
| Stack | -3.30 | External closing pair is C 2842-G 2858 |
| Stack | -2.10 | External closing pair is C 2843-G 2857 |
| Helix | -8.90 | 5 base pairs. |
| Interior loop | 1.00 | External closing pair is A 2844-T 2856 |
| Stack | -2.10 | External closing pair is C 2846-G 2854 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2847-A 2853 |
| Stack | -2.10 | External closing pair is C 924-G 2825 |
| Stack | -0.90 | External closing pair is T 925-A 2824 |
| Stack | -1.30 | External closing pair is T 926-A 2823 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is A 927-T 2822 |
| Stack | -1.30 | External closing pair is T 930-A 2819 |
| Stack | -1.00 | External closing pair is T 931-G 2818 |
| Stack | -1.40 | External closing pair is A 932-T 2817 |
| Helix | -3.70 | 4 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 933-G 2816 |
| Stack | -1.10 | External closing pair is A 934-T 2814 |
| Stack | -1.30 | External closing pair is T 935-A 2813 |
| Stack | -1.00 | External closing pair is T 936-G 2812 |
| Stack | -0.60 | External closing pair is A 937-T 2811 |
| Stack | -2.50 | External closing pair is G 938-T 2810 |
| Stack | -2.10 | External closing pair is C 939-G 2809 |
| Helix | -8.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 940-A 2808 |
| Stack | -3.30 | External closing pair is C 941-G 2806 |
| Stack | -2.10 | External closing pair is C 942-G 2805 |
| Stack | -0.90 | External closing pair is T 943-A 2804 |
| Stack | -2.40 | External closing pair is T 944-A 2803 |
| Stack | -2.10 | External closing pair is C 945-G 2802 |
| Stack | -1.10 | External closing pair is A 946-T 2801 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | -2.90 | External closing pair is T 947-A 2800 |
| Stack | -1.30 | External closing pair is G 950-T 2797 |
| Helix | -1.30 | 2 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 951-T 2796 |
| Stack | -1.00 | External closing pair is T 952-A 2793 |
| Stack | -1.40 | External closing pair is G 953-T 2792 |
| Stack | -1.00 | External closing pair is T 954-A 2791 |
| Stack | -2.50 | External closing pair is G 955-T 2790 |
| Helix | -5.90 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is C 956-G 2789 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 1019-G 2780 |
| Stack | -0.90 | External closing pair is T 1020-A 2779 |
| Stack | -0.90 | External closing pair is T 1021-A 2778 |
| Stack | -2.40 | External closing pair is T 1022-A 2777 |
| Stack | -2.40 | External closing pair is C 1023-G 2776 |
| Stack | -2.40 | External closing pair is G 1024-C 2775 |
| Stack | -2.20 | External closing pair is A 1025-T 2774 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 1026-G 2773 27 ss bases & 4 closing helices. |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.10 | External closing pair is A 958-T 1013 |
| Helix | -1.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 959-A 1012 |
| Stack | -1.10 | External closing pair is A 962-T 1009 |
| Stack | -2.10 | External closing pair is T 963-A 1008 |
| Helix | -3.20 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 964-C 1007 |
| Stack | -1.30 | External closing pair is T 966-A 1006 |
| Stack | -2.10 | External closing pair is A 967-T 1005 |
| Stack | -2.40 | External closing pair is G 968-C 1004 |
| Stack | -2.20 | External closing pair is A 969-T 1003 |
| Stack | -2.10 | External closing pair is C 970-G 1002 |
| Helix | -10.10 | 6 base pairs. |
| Interior loop | 3.10 | External closing pair is A 971-T 1001 |
| Stack | -1.40 | External closing pair is C 978-G 995 |
| Stack | -2.10 | External closing pair is G 979-T 994 |
| Stack | -2.40 | External closing pair is G 980-C 993 |
| Helix | -5.90 | 4 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 981-T 992 |
| Stack | -2.10 | External closing pair is T 90-A 874 |
| Stack | -2.20 | External closing pair is G 91-C 873 |
| Stack | -0.90 | External closing pair is T 92-A 872 |
| Stack | -2.10 | External closing pair is T 93-A 871 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 94-C 870 |
| Stack | -0.90 | External closing pair is T 95-A 868 |
| Stack | -1.00 | External closing pair is T 96-A 867 |
| Stack | -2.50 | External closing pair is G 97-T 866 |
| Stack | -2.10 | External closing pair is C 98-G 865 |
| Stack | -1.40 | External closing pair is T 99-G 864 |
| Stack | -2.20 | External closing pair is G 100-C 863 |
| Stack | -0.90 | External closing pair is T 101-A 862 |
| Helix | -11.00 | 8 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 102-A 861 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 116-G 811 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -3.40 | External closing pair is G 118-C 796 |
| Stack | -2.10 | External closing pair is C 119-G 795 |
| Stack | -0.90 | External closing pair is T 120-A 794 |
| Stack | -1.30 | External closing pair is T 121-A 793 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 122-T 792 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -2.40 | External closing pair is T 127-A 762 |
| Stack | -3.30 | External closing pair is C 128-G 761 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.40 | External closing pair is C 129-G 760 |
| Stack | -1.40 | External closing pair is G 130-T 758 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 23
seq.txt
ΔG = -813.20
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 1.10 | External closing pair is A 217-T 2392 38 ss bases & 4 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.20 | External closing pair is A 394-T 2262 |
| Stack | -3.30 | External closing pair is C 395-G 2261 |
| Stack | -2.10 | External closing pair is C 396-G 2260 |
| Stack | -2.10 | External closing pair is A 397-T 2259 |
| Stack | -1.50 | External closing pair is G 398-C 2258 |
| Stack | -1.40 | External closing pair is G 399-T 2257 |
| Helix | -12.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 2256 |
| Stack | -2.10 | External closing pair is C 402-G 2255 |
| Stack | -0.90 | External closing pair is T 403-A 2254 |
| Stack | -1.30 | External closing pair is T 404-A 2253 |
| Stack | -1.10 | External closing pair is A 405-T 2252 |
| Stack | -0.90 | External closing pair is T 406-A 2251 |
| Stack | -1.30 | External closing pair is T 407-A 2250 |
| Stack | -0.90 | External closing pair is A 408-T 2249 |
| Helix | -8.50 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 409-T 2248 |
| Stack | -2.20 | External closing pair is G 410-C 2246 |
| Stack | -1.00 | External closing pair is T 411-A 2245 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is G 412-T 2244 |
| Stack | -1.30 | External closing pair is G 415-T 2240 |
| Stack | -0.60 | External closing pair is A 416-T 2239 |
| Stack | -2.50 | External closing pair is G 417-T 2238 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 418-G 2237 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -6.70 | 4 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -1.10 | External closing pair is A 424-T 2216 |
| Stack | -1.30 | External closing pair is T 425-A 2215 |
| Stack | -2.20 | External closing pair is A 426-T 2214 |
| Stack | -3.30 | External closing pair is C 427-G 2213 |
| Stack | -2.10 | External closing pair is C 428-G 2212 |
| Helix | -10.00 | 6 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 429-T 2211 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1115-G 2209 |
| Stack | -0.90 | External closing pair is T 1116-A 2208 |
| Stack | -0.90 | External closing pair is T 1117-A 2207 |
| Stack | -2.10 | External closing pair is T 1118-A 2206 |
| Stack | -3.30 | External closing pair is G 1119-C 2205 |
| Helix | -9.30 | 6 base pairs. |
| Interior loop | 1.90 | External closing pair is G 1120-C 2204 |
| Stack | -0.60 | External closing pair is A 1124-T 2201 |
| Stack | -0.50 | External closing pair is G 1125-T 2200 |
| Stack | -1.30 | External closing pair is G 1126-T 2199 |
| Stack | -2.20 | External closing pair is A 1127-T 2198 |
| Stack | -1.40 | External closing pair is C 1128-G 2197 |
| Stack | -2.10 | External closing pair is G 1129-T 2196 |
| Helix | -8.10 | 7 base pairs. |
| Interior loop | 2.50 | External closing pair is G 1130-C 2195 |
| Stack | -2.20 | External closing pair is G 1132-C 2192 |
| Stack | -0.90 | External closing pair is T 1133-A 2191 |
| Stack | -2.10 | External closing pair is T 1134-A 2190 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | -1.90 | External closing pair is G 1135-C 2189 |
| Stack | -3.30 | External closing pair is C 1138-G 2186 |
| Stack | -2.10 | External closing pair is C 1139-G 2185 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1140-T 2184 |
| Stack | -2.10 | External closing pair is C 1142-G 2183 |
| Stack | -1.00 | External closing pair is T 1143-G 2182 |
| Stack | -2.20 | External closing pair is A 1144-T 2181 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 1145-G 2180 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1368-G 2179 |
| Stack | -2.10 | External closing pair is A 1369-T 2178 |
| Stack | -3.40 | External closing pair is G 1370-C 2177 |
| Stack | -2.10 | External closing pair is C 1371-G 2176 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 1372-T 2175 7 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.90 | External closing pair is A 1376-T 2138 |
| Stack | -0.60 | External closing pair is A 1377-T 2137 |
| Helix | -1.50 | 3 base pairs. |
| Interior loop | -2.50 | External closing pair is G 1378-T 2136 |
| Stack | -1.40 | External closing pair is A 1381-T 2133 |
| Stack | -1.50 | External closing pair is T 1382-G 2132 |
| Helix | -2.90 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is C 1383-G 2131 |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -3.30 | External closing pair is G 236-C 391 |
| Stack | -2.20 | External closing pair is G 237-C 390 |
| Stack | -2.40 | External closing pair is T 238-A 389 |
| Helix | -7.90 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is C 239-G 388 |
| Stack | -2.10 | External closing pair is C 242-G 383 |
| Stack | -2.10 | External closing pair is T 243-A 382 |
| Stack | -2.20 | External closing pair is G 244-C 381 |
| Stack | -1.00 | External closing pair is T 245-A 380 |
| Helix | -7.40 | 5 base pairs. |
| Interior loop | 1.40 | External closing pair is G 246-T 379 |
| Stack | -1.00 | External closing pair is T 249-A 376 |
| Stack | -1.30 | External closing pair is G 250-T 375 |
| Helix | -2.30 | 3 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 251-T 374 6 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -1.10 | External closing pair is A 255-T 323 |
| Stack | -2.10 | External closing pair is T 256-A 322 |
| Stack | -3.30 | External closing pair is G 257-C 321 |
| Helix | -6.50 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 258-C 320 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 286-C 317 |
| Stack | -1.40 | External closing pair is A 287-T 316 |
| Stack | -1.00 | External closing pair is T 288-G 315 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is A 289-T 314 |
| Stack | -1.30 | External closing pair is T 292-A 311 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 293-T 310 |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 24
seq.txt
ΔG = -812.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Bulge loop | 5.20 | External closing pair is T 361-G 2222 |
| Stack | -3.30 | External closing pair is C 362-G 2213 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 363-G 2212 |
| Stack | -1.30 | External closing pair is T 365-A 2210 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 366-G 2209 |
| Stack | -2.10 | External closing pair is T 369-A 2206 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.80 | External closing pair is G 370-C 2205 |
| Stack | -2.20 | External closing pair is G 373-C 2204 |
| Stack | -0.90 | External closing pair is T 374-A 2203 |
| Stack | -1.30 | External closing pair is T 375-A 2202 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 376-T 2201 |
| Stack | -2.20 | External closing pair is A 380-T 2198 |
| Stack | -2.10 | External closing pair is C 381-G 2197 |
| Stack | -2.10 | External closing pair is A 382-T 2196 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 383-C 2195 |
| Stack | -2.10 | External closing pair is T 384-A 2193 |
| Stack | -2.20 | External closing pair is G 385-C 2192 |
| Stack | -0.90 | External closing pair is T 386-A 2191 |
| Stack | -2.10 | External closing pair is T 387-A 2190 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 388-C 2189 |
| Stack | -2.20 | External closing pair is A 389-T 2187 |
| Stack | -3.30 | External closing pair is C 390-G 2186 |
| Stack | -2.10 | External closing pair is C 391-G 2185 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 392-T 2184 |
| Stack | -1.00 | External closing pair is T 393-G 2182 |
| Stack | -2.20 | External closing pair is A 394-T 2181 |
| Stack | -3.30 | External closing pair is C 395-G 2180 |
| Stack | -2.10 | External closing pair is C 396-G 2179 |
| Stack | -2.10 | External closing pair is A 397-T 2178 |
| Helix | -10.70 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 398-C 2177 26 ss bases & 4 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.20 | External closing pair is G 410-C 2109 |
| Stack | -2.10 | External closing pair is T 411-A 2108 |
| Stack | -2.40 | External closing pair is G 412-C 2107 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 413-T 2106 |
| Stack | -1.30 | External closing pair is G 415-T 2104 |
| Stack | -2.10 | External closing pair is A 416-T 2103 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 4.20 | External closing pair is G 417-C 2102 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -3.30 | External closing pair is C 418-G 2078 |
| Stack | -2.10 | External closing pair is C 419-G 2077 |
| Stack | -0.90 | External closing pair is A 420-T 2076 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 421-T 2075 |
| Stack | -1.40 | External closing pair is A 424-T 2072 |
| Stack | -1.00 | External closing pair is T 425-G 2071 |
| Stack | -2.20 | External closing pair is A 426-T 2070 |
| Stack | -3.30 | External closing pair is C 427-G 2069 |
| Stack | -2.10 | External closing pair is C 428-G 2068 |
| Stack | -0.90 | External closing pair is A 429-T 2067 |
| Stack | -2.20 | External closing pair is A 430-T 2066 |
| Stack | -2.10 | External closing pair is C 431-G 2065 |
| Stack | -2.10 | External closing pair is T 432-A 2064 |
| Helix | -17.30 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 433-C 2063 15 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.40 | External closing pair is G 2011-C 2046 |
| Stack | -1.10 | External closing pair is A 2012-T 2045 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2013-A 2044 |
| Stack | -2.50 | External closing pair is G 2015-T 2042 |
| Stack | -1.40 | External closing pair is C 2016-G 2041 |
| Stack | -1.40 | External closing pair is G 2017-T 2040 |
| Stack | -0.90 | External closing pair is T 2018-A 2039 |
| Stack | -0.90 | External closing pair is T 2019-A 2038 |
| Stack | -0.90 | External closing pair is T 2020-A 2037 |
| Stack | -1.30 | External closing pair is T 2021-A 2036 |
| Stack | 0.30 | External closing pair is T 2022-G 2035 |
| Helix | -9.00 | 9 base pairs. |
| Interior loop | -0.40 | External closing pair is G 2023-T 2034 |
| Stack | -2.10 | External closing pair is A 2025-T 2032 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 2026-C 2031 |
| Stack | -1.30 | External closing pair is T 437-A 2003 |
| Stack | -0.60 | External closing pair is A 438-T 2002 |
| Stack | -1.40 | External closing pair is G 439-T 2001 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 440-A 2000 |
| Stack | -2.40 | External closing pair is T 442-A 1998 |
| Stack | -2.10 | External closing pair is C 443-G 1997 |
| Stack | -2.10 | External closing pair is T 444-A 1996 |
| Stack | -2.40 | External closing pair is G 445-C 1995 |
| Stack | -0.90 | External closing pair is A 446-T 1994 |
| Helix | -9.90 | 6 base pairs. |
| Interior loop | 3.40 | External closing pair is A 447-T 1993 |
| Stack | -3.30 | External closing pair is G 451-C 1991 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 3.10 | External closing pair is G 452-C 1990 |
| Stack | -1.40 | External closing pair is T 460-G 1981 |
| Stack | -3.30 | External closing pair is G 461-C 1980 |
| Stack | -2.40 | External closing pair is G 462-C 1979 |
| Stack | -0.60 | External closing pair is A 463-T 1978 |
| Stack | -1.30 | External closing pair is G 464-T 1977 |
| Stack | -1.40 | External closing pair is A 465-T 1976 |
| Stack | -0.60 | External closing pair is T 466-G 1975 |
| Stack | -1.00 | External closing pair is T 467-A 1974 |
| Stack | -1.30 | External closing pair is G 468-T 1973 |
| Helix | -13.30 | 10 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 469-T 1972 8 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 898-C 1949 |
| Stack | -0.90 | External closing pair is A 899-T 1948 |
| Stack | -0.60 | External closing pair is A 900-T 1947 |
| Stack | -2.10 | External closing pair is G 901-T 1946 |
| Stack | -2.20 | External closing pair is G 902-C 1945 |
| Stack | -2.10 | External closing pair is T 903-A 1944 |
| Stack | -3.40 | External closing pair is G 904-C 1943 |
| Stack | -3.30 | External closing pair is C 905-G 1942 |
| Stack | -2.10 | External closing pair is C 906-G 1941 |
| Helix | -19.10 | 10 base pairs. |
| Interior loop | 4.20 | External closing pair is T 907-A 1940 |
| Stack | -2.40 | External closing pair is T 914-A 1936 |
| Stack | -3.30 | External closing pair is C 915-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Interior loop | 1.40 | External closing pair is C 916-G 1934 |
| Stack | -1.30 | External closing pair is G 919-T 1932 |
| Stack | -2.20 | External closing pair is A 920-T 1931 |
| Stack | -2.10 | External closing pair is C 921-G 1930 |
| Stack | -1.30 | External closing pair is T 922-A 1929 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 4.70 | External closing pair is A 923-T 1928 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 967-T 1927 |
| Stack | -1.30 | External closing pair is G 968-T 1926 |
| Stack | -2.20 | External closing pair is A 969-T 1925 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 970-G 1924 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1225-C 1922 |
| Stack | -2.10 | External closing pair is C 1226-G 1921 |
| Stack | -1.40 | External closing pair is A 1227-T 1920 |
| Helix | -6.90 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1228-G 1919 |
| Stack | -2.10 | External closing pair is A 1230-T 1917 |
| Stack | -2.20 | External closing pair is G 1231-C 1916 |
| Stack | -0.90 | External closing pair is T 1232-A 1915 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1233-A 1914 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1257-G 1909 |
| Stack | -2.10 | External closing pair is C 1258-G 1908 |
| Stack | -1.30 | External closing pair is T 1259-A 1907 |
| Stack | -0.60 | External closing pair is T 1260-G 1906 |
| Stack | -1.30 | External closing pair is T 1261-A 1905 |
| Helix | -8.60 | 6 base pairs. |
| Interior loop | 1.90 | External closing pair is A 1262-T 1904 |
| Stack | -0.90 | External closing pair is T 1265-A 1900 |
| Stack | -0.90 | External closing pair is T 1266-A 1899 |
| Stack | -0.90 | External closing pair is T 1267-A 1898 |
| Stack | -2.40 | External closing pair is T 1268-A 1897 |
| Helix | -5.10 | 5 base pairs. |
| Multi-loop | -1.20 | External closing pair is C 1269-G 1896 24 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is G 1273-C 1863 |
| Stack | -1.40 | External closing pair is A 1274-T 1862 |
| Stack | -1.00 | External closing pair is T 1275-G 1861 |
| Stack | -0.90 | External closing pair is A 1276-T 1860 |
| Stack | -2.10 | External closing pair is A 1277-T 1859 |
| Helix | -7.80 | 6 base pairs. |
| Multi-loop | 0.10 | External closing pair is G 1278-C 1858 31 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -0.90 | External closing pair is T 974-A 1222 |
| Stack | -2.40 | External closing pair is T 975-A 1221 |
| Stack | -3.30 | External closing pair is C 976-G 1220 |
| Stack | -3.30 | External closing pair is C 977-G 1219 |
| Stack | -1.40 | External closing pair is C 978-G 1218 |
| Stack | -2.10 | External closing pair is G 979-T 1217 |
| Stack | -2.40 | External closing pair is G 980-C 1216 |
| Helix | -15.80 | 8 base pairs. |
| Interior loop | 4.70 | External closing pair is A 981-T 1215 |
| Stack | -1.00 | External closing pair is T 983-A 1210 |
| Stack | -2.10 | External closing pair is G 984-T 1209 |
| Stack | -2.50 | External closing pair is G 985-C 1208 |
| Stack | -1.50 | External closing pair is T 986-G 1207 |
| Stack | -2.10 | External closing pair is C 987-G 1206 |
| Helix | -9.20 | 6 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 988-T 1205 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -2.50 | External closing pair is G 995-C 1175 |
| Stack | -1.00 | External closing pair is T 996-G 1174 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 997-T 1173 |
| Stack | -0.90 | External closing pair is T 998-A 1171 |
| Stack | -0.90 | External closing pair is T 999-A 1170 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | -2.50 | External closing pair is T 1000-A 1169 |
| Stack | -2.40 | External closing pair is T 1003-A 1166 |
| Stack | -2.10 | External closing pair is C 1004-G 1165 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1005-G 1164 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -3.40 | External closing pair is G 1014-C 1030 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1015-G 1029 |
| Stack | -2.10 | External closing pair is A 1017-T 1027 |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.40 | External closing pair is G 470-C 895 |
| Stack | -0.90 | External closing pair is A 471-T 894 |
| Stack | -0.90 | External closing pair is A 472-T 893 |
| Stack | -2.20 | External closing pair is A 473-T 892 |
| Stack | -2.10 | External closing pair is C 474-G 891 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is A 475-T 890 |
| Stack | -2.10 | External closing pair is A 478-T 888 |
| Stack | -3.40 | External closing pair is G 479-C 887 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.30 | External closing pair is C 480-G 886 29 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 582-A 871 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -15.30 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -3.30 | External closing pair is G 492-C 577 |
| Stack | -2.40 | External closing pair is G 493-C 576 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 494-T 575 14 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -2.10 | External closing pair is T 497-A 527 |
| Stack | -3.40 | External closing pair is G 498-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 499-G 525 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 25
seq.txt
ΔG = -812.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 0.70 | External closing pair is G 46-C 3102 15 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -3.30 | External closing pair is G 1485-C 2661 |
| Stack | -2.40 | External closing pair is G 1486-C 2660 |
| Helix | -5.70 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 1487-T 2659 |
| Stack | -1.10 | External closing pair is A 1491-T 2655 |
| Stack | -0.90 | External closing pair is T 1492-A 2654 |
| Stack | -0.90 | External closing pair is T 1493-A 2653 |
| Stack | -1.30 | External closing pair is T 1494-A 2652 |
| Helix | -4.20 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1495-T 2651 |
| Stack | -2.40 | External closing pair is T 1496-A 2648 |
| Stack | -2.10 | External closing pair is C 1497-G 2647 |
| Stack | -0.60 | External closing pair is A 1498-T 2646 |
| Stack | -2.50 | External closing pair is G 1499-T 2645 |
| Helix | -7.60 | 5 base pairs. |
| Multi-loop | 2.10 | External closing pair is C 1500-G 2644 11 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -1.00 | External closing pair is T 1505-G 2617 |
| Stack | -2.20 | External closing pair is A 1506-T 2616 |
| Stack | -2.10 | External closing pair is C 1507-G 2615 |
| Stack | -0.90 | External closing pair is T 1508-A 2614 |
| Stack | -0.90 | External closing pair is T 1509-A 2613 |
| Stack | -0.90 | External closing pair is T 1510-A 2612 |
| Stack | -0.90 | External closing pair is T 1511-A 2611 |
| Helix | -8.90 | 8 base pairs. |
| Interior loop | 2.70 | External closing pair is T 1512-A 2610 |
| Stack | -2.50 | External closing pair is G 1516-T 2606 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1517-G 2605 5 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1569-A 2603 |
| Stack | -2.10 | External closing pair is C 1570-G 2602 |
| Stack | -2.20 | External closing pair is A 1571-T 2601 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1572-G 2600 |
| Stack | -2.10 | External closing pair is C 1574-G 2599 |
| Stack | -2.10 | External closing pair is A 1575-T 2598 |
| Stack | -3.30 | External closing pair is G 1576-C 2597 |
| Stack | -2.40 | External closing pair is G 1577-C 2596 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 4.70 | External closing pair is A 1578-T 2595 3 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -2.20 | External closing pair is A 1580-T 2136 |
| Stack | -2.10 | External closing pair is C 1581-G 2135 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is A 1582-T 2134 |
| Stack | -2.10 | External closing pair is C 1587-G 2131 |
| Stack | -0.90 | External closing pair is T 1588-A 2130 |
| Stack | -2.40 | External closing pair is T 1589-A 2129 |
| Stack | -3.30 | External closing pair is C 1590-G 2128 |
| Helix | -8.70 | 5 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 1591-G 2127 12 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2040-A 2121 |
| Stack | -2.50 | External closing pair is G 2041-C 2120 |
| Stack | -1.50 | External closing pair is T 2042-G 2119 |
| Stack | -2.10 | External closing pair is C 2043-G 2118 |
| Stack | -1.10 | External closing pair is A 2044-T 2117 |
| Helix | -9.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2045-A 2116 |
| Stack | -3.30 | External closing pair is G 2047-C 2114 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 2.80 | External closing pair is G 2048-C 2113 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -2.10 | External closing pair is C 1595-G 2035 |
| Stack | -2.20 | External closing pair is A 1596-T 2034 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 1597-G 2033 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1628-T 2032 |
| Stack | -3.40 | External closing pair is G 1629-C 2031 |
| Stack | -2.10 | External closing pair is C 1630-G 2030 |
| Stack | -0.90 | External closing pair is A 1631-T 2029 |
| Helix | -8.50 | 5 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 1632-T 2028 11 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -0.90 | External closing pair is T 1651-A 1985 |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 50-C 1478 |
| Stack | -2.10 | External closing pair is C 51-G 1477 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 52-T 1476 |
| Stack | -2.10 | External closing pair is T 54-A 1474 |
| Stack | -3.40 | External closing pair is G 55-C 1473 |
| Stack | -2.10 | External closing pair is C 56-G 1472 |
| Stack | -1.30 | External closing pair is T 57-A 1471 |
| Stack | -0.60 | External closing pair is A 58-T 1470 |
| Helix | -9.50 | 6 base pairs. |
| Multi-loop | 3.90 | External closing pair is G 59-T 1469 16 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is G 1434-T 1465 |
| Stack | -1.10 | External closing pair is A 1435-T 1464 |
| Stack | -2.40 | External closing pair is T 1436-A 1463 |
| Stack | -1.40 | External closing pair is C 1437-G 1462 |
| Stack | -1.30 | External closing pair is G 1438-T 1461 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1439-T 1460 |
| Stack | -2.40 | External closing pair is G 1441-C 1458 |
| Stack | -1.10 | External closing pair is A 1442-T 1457 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.60 | External closing pair is T 1443-A 1456 |
| Hairpin loop | 3.70 | Closing pair is G 1447-C 1453 |
| Stack | -0.90 | External closing pair is T 61-A 1421 |
| Stack | -1.30 | External closing pair is T 62-A 1420 |
| Stack | -1.00 | External closing pair is T 63-G 1419 |
| Stack | -2.10 | External closing pair is A 64-T 1418 |
| Stack | -2.50 | External closing pair is G 65-C 1417 |
| Stack | -1.40 | External closing pair is T 66-G 1416 |
| Helix | -9.20 | 7 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 67-C 1415 |
| Stack | -2.40 | External closing pair is G 69-C 1414 |
| Stack | -2.10 | External closing pair is A 70-T 1413 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is G 71-C 1412 24 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.40 | External closing pair is G 85-T 1382 |
| Stack | -2.40 | External closing pair is T 86-A 1381 |
| Stack | -2.10 | External closing pair is C 87-G 1380 |
| Stack | -1.40 | External closing pair is A 88-T 1379 |
| Stack | -0.60 | External closing pair is T 89-G 1378 |
| Helix | -7.90 | 6 base pairs. |
| Interior loop | 2.60 | External closing pair is T 90-A 1377 |
| Stack | -1.40 | External closing pair is G 94-T 1374 |
| Stack | -0.90 | External closing pair is T 95-A 1373 |
| Stack | -2.10 | External closing pair is T 96-A 1372 |
| Stack | -3.40 | External closing pair is G 97-C 1371 |
| Stack | -2.10 | External closing pair is C 98-G 1370 |
| Stack | -2.10 | External closing pair is T 99-A 1369 |
| Helix | -12.00 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 100-C 1368 23 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 283-C 1362 |
| Stack | -3.30 | External closing pair is C 284-G 1361 |
| Stack | -1.40 | External closing pair is C 285-G 1360 |
| Stack | -1.30 | External closing pair is G 286-T 1359 |
| Stack | -1.10 | External closing pair is A 287-T 1358 |
| Stack | -1.30 | External closing pair is T 288-A 1357 |
| Stack | -1.10 | External closing pair is A 289-T 1356 |
| Stack | -1.30 | External closing pair is T 290-A 1355 |
| Stack | -0.60 | External closing pair is T 291-G 1354 |
| Helix | -14.80 | 10 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 292-A 1353 58 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -0.90 | External closing pair is T 309-A 1277 |
| Stack | -1.30 | External closing pair is T 310-A 1276 |
| Stack | -1.10 | External closing pair is A 311-T 1275 |
| Stack | -1.30 | External closing pair is T 312-A 1274 |
| Stack | -0.60 | External closing pair is T 313-G 1273 |
| Stack | -2.10 | External closing pair is T 314-A 1272 |
| Stack | -2.20 | External closing pair is G 315-C 1271 |
| Helix | -9.50 | 8 base pairs. |
| Interior loop | 3.60 | External closing pair is T 316-A 1270 |
| Stack | -2.10 | External closing pair is C 321-G 1264 |
| Stack | -1.10 | External closing pair is A 322-T 1263 |
| Stack | -1.30 | External closing pair is T 323-A 1262 |
| Stack | -0.90 | External closing pair is A 324-T 1261 |
| Helix | -5.40 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 325-T 1260 |
| Stack | -2.20 | External closing pair is G 326-C 1257 |
| Stack | -0.90 | External closing pair is T 327-A 1256 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 328-A 1255 |
| Stack | -2.40 | External closing pair is T 330-A 1252 |
| Stack | -2.10 | External closing pair is C 331-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 332-T 1250 |
| Stack | -0.90 | External closing pair is A 333-T 1248 |
| Stack | -2.10 | External closing pair is A 334-T 1247 |
| Stack | -2.50 | External closing pair is G 335-C 1246 |
| Stack | -1.00 | External closing pair is T 336-G 1245 |
| Stack | -0.90 | External closing pair is A 337-T 1244 |
| Stack | -0.60 | External closing pair is A 338-T 1243 |
| Helix | -8.00 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is G 339-T 1242 |
| Stack | -2.40 | External closing pair is G 340-C 1240 |
| Stack | -2.20 | External closing pair is A 341-T 1239 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 342-G 1238 |
| Stack | -2.10 | External closing pair is C 347-G 1237 |
| Stack | -0.90 | External closing pair is A 348-T 1236 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | -0.30 | External closing pair is A 349-T 1235 |
| Stack | -2.20 | External closing pair is A 352-T 1232 |
| Stack | -2.10 | External closing pair is C 353-G 1231 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is T 354-A 1230 |
| Stack | -2.10 | External closing pair is T 356-A 1227 |
| Stack | -3.40 | External closing pair is G 357-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.10 | External closing pair is C 358-G 1225 |
| Stack | -0.90 | External closing pair is T 360-A 1222 |
| Stack | -2.40 | External closing pair is T 361-A 1221 |
| Stack | -3.30 | External closing pair is C 362-G 1220 |
| Stack | -3.30 | External closing pair is C 363-G 1219 |
| Helix | -9.90 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is C 364-G 1218 |
| Stack | -1.30 | External closing pair is G 367-T 1215 |
| Stack | -1.10 | External closing pair is A 368-T 1214 |
| Stack | -2.10 | External closing pair is T 369-A 1213 |
| Stack | -2.40 | External closing pair is G 370-C 1212 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 371-T 1211 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 390-G 1207 |
| Stack | -2.10 | External closing pair is C 391-G 1206 |
| Stack | -1.40 | External closing pair is A 392-T 1205 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is T 393-G 1204 |
| Stack | -2.10 | External closing pair is A 397-T 1200 |
| Stack | -1.50 | External closing pair is G 398-C 1199 |
| Stack | -1.40 | External closing pair is G 399-T 1198 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 400-A 1197 |
| Stack | -2.10 | External closing pair is C 402-G 1196 |
| Stack | -1.30 | External closing pair is T 403-A 1195 |
| Stack | -1.00 | External closing pair is T 404-G 1194 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is A 405-T 1193 |
| Stack | -0.90 | External closing pair is A 408-T 1190 |
| Stack | -0.60 | External closing pair is A 409-T 1189 |
| Stack | -1.40 | External closing pair is G 410-T 1188 |
| Stack | -2.10 | External closing pair is T 411-A 1187 |
| Helix | -5.00 | 5 base pairs. |
| Multi-loop | -0.20 | External closing pair is G 412-C 1186 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 1178 |
| Stack | -2.10 | External closing pair is A 1124-T 1177 |
| Stack | -3.30 | External closing pair is G 1125-C 1176 |
| Helix | -7.80 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1126-C 1175 |
| Stack | -1.40 | External closing pair is C 1128-G 1174 |
| Stack | -2.10 | External closing pair is G 1129-T 1173 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.90 | External closing pair is G 1130-C 1172 |
| Interior loop | -2.50 | External closing pair is T 1133-A 1169 |
| Stack | -2.40 | External closing pair is T 1136-A 1166 |
| Stack | -3.30 | External closing pair is C 1137-G 1165 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 6.50 | Closing pair is C 1138-G 1164 |
| Stack | -3.30 | External closing pair is C 418-G 1120 |
| Stack | -2.10 | External closing pair is C 419-G 1119 |
| Stack | -0.90 | External closing pair is A 420-T 1118 |
| Stack | -0.90 | External closing pair is A 421-T 1117 |
| Stack | -2.10 | External closing pair is A 422-T 1116 |
| Helix | -9.30 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is G 423-C 1115 9 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.20 | External closing pair is A 430-T 440 |
| Stack | -2.10 | External closing pair is C 431-G 439 |
| Stack | -1.00 | External closing pair is T 432-A 438 |
| Helix | -5.30 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 433-T 437 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -0.60 | External closing pair is T 106-G 269 |
| Stack | -2.10 | External closing pair is T 107-A 268 |
| Stack | -2.40 | External closing pair is G 108-C 267 |
| Stack | -2.10 | External closing pair is A 109-T 266 |
| Stack | -2.20 | External closing pair is G 110-C 265 |
| Stack | -1.00 | External closing pair is T 111-A 264 |
| Helix | -10.40 | 7 base pairs. |
| Bulge loop | 3.80 | External closing pair is G 112-T 263 |
| Stack | -2.50 | External closing pair is G 115-T 262 |
| Stack | -2.10 | External closing pair is C 116-G 261 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.10 | External closing pair is T 117-A 260 |
| Stack | -0.50 | External closing pair is T 120-G 258 |
| Stack | -1.00 | External closing pair is T 121-G 257 |
| Stack | -1.10 | External closing pair is A 122-T 256 |
| Helix | -2.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 123-A 255 |
| Stack | -1.30 | External closing pair is T 125-A 253 |
| Stack | -1.10 | External closing pair is A 126-T 252 |
| Stack | -2.40 | External closing pair is T 127-A 251 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is C 128-G 250 |
| Stack | -2.40 | External closing pair is G 132-C 248 |
| Stack | -2.20 | External closing pair is A 133-T 247 |
| Stack | -2.10 | External closing pair is C 134-G 246 |
| Stack | -2.20 | External closing pair is A 135-T 245 |
| Stack | -2.10 | External closing pair is C 136-G 244 |
| Helix | -11.00 | 6 base pairs. |
| Interior loop | 4.30 | External closing pair is A 137-T 243 |
| Stack | -2.20 | External closing pair is A 143-T 238 |
| Stack | -3.30 | External closing pair is C 144-G 237 |
| Stack | -2.10 | External closing pair is C 145-G 236 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 146-A 235 28 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 191-C 222 |
| Stack | -2.10 | External closing pair is C 192-G 221 |
| Stack | -1.10 | External closing pair is A 193-T 220 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is T 194-A 219 |
| Stack | -1.40 | External closing pair is C 200-G 214 |
| Stack | -0.50 | External closing pair is G 201-T 213 |
| Stack | -1.30 | External closing pair is G 202-T 212 |
| Stack | -1.40 | External closing pair is A 203-T 211 |
| Helix | -4.60 | 5 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 204-G 210 |
| Stack | -1.00 | External closing pair is T 154-A 181 |
| Stack | -2.10 | External closing pair is G 155-T 180 |
| Stack | -2.40 | External closing pair is G 156-C 179 |
| Stack | -0.90 | External closing pair is A 157-T 178 |
| Helix | -6.40 | 5 base pairs. |
| Bulge loop | 3.20 | External closing pair is A 158-T 177 |
| Stack | -2.50 | External closing pair is G 159-T 175 |
| Stack | -2.10 | External closing pair is C 160-G 174 |
| Stack | -2.10 | External closing pair is T 161-A 173 |
| Stack | -1.50 | External closing pair is G 162-C 172 |
| Helix | -8.20 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is G 163-T 171 |
Structure 26
seq.txt
ΔG = -811.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Bulge loop | 5.20 | External closing pair is T 361-G 2222 |
| Stack | -3.30 | External closing pair is C 362-G 2213 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 363-G 2212 |
| Stack | -1.30 | External closing pair is T 365-A 2210 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 366-G 2209 |
| Stack | -2.10 | External closing pair is T 369-A 2206 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.80 | External closing pair is G 370-C 2205 |
| Stack | -2.20 | External closing pair is G 373-C 2204 |
| Stack | -0.90 | External closing pair is T 374-A 2203 |
| Stack | -1.30 | External closing pair is T 375-A 2202 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 376-T 2201 |
| Stack | -2.20 | External closing pair is A 380-T 2198 |
| Stack | -2.10 | External closing pair is C 381-G 2197 |
| Stack | -2.10 | External closing pair is A 382-T 2196 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 383-C 2195 |
| Stack | -2.10 | External closing pair is T 384-A 2193 |
| Stack | -2.20 | External closing pair is G 385-C 2192 |
| Stack | -0.90 | External closing pair is T 386-A 2191 |
| Stack | -2.10 | External closing pair is T 387-A 2190 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 388-C 2189 |
| Stack | -2.20 | External closing pair is A 389-T 2187 |
| Stack | -3.30 | External closing pair is C 390-G 2186 |
| Stack | -2.10 | External closing pair is C 391-G 2185 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 392-T 2184 |
| Stack | -1.00 | External closing pair is T 393-G 2182 |
| Stack | -2.20 | External closing pair is A 394-T 2181 |
| Stack | -3.30 | External closing pair is C 395-G 2180 |
| Stack | -2.10 | External closing pair is C 396-G 2179 |
| Stack | -2.10 | External closing pair is A 397-T 2178 |
| Helix | -10.70 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 398-C 2177 26 ss bases & 4 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.20 | External closing pair is G 410-C 2109 |
| Stack | -2.10 | External closing pair is T 411-A 2108 |
| Stack | -2.40 | External closing pair is G 412-C 2107 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 413-T 2106 |
| Stack | -1.30 | External closing pair is G 415-T 2104 |
| Stack | -2.10 | External closing pair is A 416-T 2103 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 4.20 | External closing pair is G 417-C 2102 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -3.30 | External closing pair is C 418-G 2078 |
| Stack | -2.10 | External closing pair is C 419-G 2077 |
| Stack | -0.90 | External closing pair is A 420-T 2076 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 421-T 2075 |
| Stack | -1.40 | External closing pair is A 424-T 2072 |
| Stack | -1.00 | External closing pair is T 425-G 2071 |
| Stack | -2.20 | External closing pair is A 426-T 2070 |
| Stack | -3.30 | External closing pair is C 427-G 2069 |
| Stack | -2.10 | External closing pair is C 428-G 2068 |
| Stack | -0.90 | External closing pair is A 429-T 2067 |
| Stack | -2.20 | External closing pair is A 430-T 2066 |
| Stack | -2.10 | External closing pair is C 431-G 2065 |
| Stack | -2.10 | External closing pair is T 432-A 2064 |
| Helix | -17.30 | 10 base pairs. |
| Multi-loop | 0.80 | External closing pair is G 433-C 2063 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 632-C 2057 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is G 633-C 2056 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1965-C 2049 |
| Stack | -3.30 | External closing pair is C 1966-G 2048 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 1967-G 2047 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2011-C 2046 |
| Stack | -1.10 | External closing pair is A 2012-T 2045 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2013-A 2044 |
| Stack | -2.50 | External closing pair is G 2015-T 2042 |
| Stack | -1.40 | External closing pair is C 2016-G 2041 |
| Stack | -1.40 | External closing pair is G 2017-T 2040 |
| Stack | -0.90 | External closing pair is T 2018-A 2039 |
| Stack | -0.90 | External closing pair is T 2019-A 2038 |
| Stack | -0.90 | External closing pair is T 2020-A 2037 |
| Stack | -1.30 | External closing pair is T 2021-A 2036 |
| Stack | 0.30 | External closing pair is T 2022-G 2035 |
| Helix | -9.00 | 9 base pairs. |
| Interior loop | -0.40 | External closing pair is G 2023-T 2034 |
| Stack | -2.10 | External closing pair is A 2025-T 2032 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 2026-C 2031 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.40 | External closing pair is T 638-A 1961 |
| Stack | -1.40 | External closing pair is C 639-G 1960 |
| Stack | -2.10 | External closing pair is G 640-T 1959 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 641-C 1958 |
| Stack | -1.50 | External closing pair is T 643-G 1957 |
| Stack | -2.10 | External closing pair is C 644-G 1956 |
| Stack | -0.90 | External closing pair is A 645-T 1955 |
| Stack | -0.90 | External closing pair is A 646-T 1954 |
| Stack | -2.10 | External closing pair is A 647-T 1953 |
| Stack | -2.20 | External closing pair is G 648-C 1952 |
| Stack | -0.90 | External closing pair is T 649-A 1951 |
| Helix | -10.60 | 8 base pairs. |
| Interior loop | 3.00 | External closing pair is T 650-A 1950 |
| Stack | -2.10 | External closing pair is G 653-T 1946 |
| Stack | -2.20 | External closing pair is G 654-C 1945 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 3.70 | External closing pair is T 655-A 1944 |
| Stack | -3.40 | External closing pair is G 659-C 1943 |
| Stack | -2.10 | External closing pair is C 660-G 1942 |
| Stack | -0.60 | External closing pair is T 661-G 1941 |
| Stack | -0.90 | External closing pair is T 662-A 1940 |
| Stack | -0.90 | External closing pair is T 663-A 1939 |
| Stack | -2.40 | External closing pair is T 664-A 1938 |
| Stack | -2.10 | External closing pair is C 665-G 1937 |
| Helix | -12.40 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is T 666-A 1936 |
| Stack | -2.10 | External closing pair is C 668-G 1934 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is T 669-A 1933 |
| Stack | -0.60 | External closing pair is T 672-G 1930 |
| Helix | -0.60 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 673-A 1929 |
| Stack | -0.90 | External closing pair is A 675-T 1927 |
| Stack | -0.90 | External closing pair is A 676-T 1926 |
| Stack | -2.20 | External closing pair is A 677-T 1925 |
| Stack | -2.10 | External closing pair is C 678-G 1924 |
| Helix | -6.10 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 679-G 1923 |
| Stack | -3.40 | External closing pair is G 682-C 1922 |
| Stack | -2.10 | External closing pair is C 683-G 1921 |
| Stack | -1.40 | External closing pair is A 684-T 1920 |
| Stack | -1.40 | External closing pair is T 685-G 1919 |
| Helix | -8.30 | 5 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 686-C 1918 13 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -0.60 | External closing pair is A 1163-T 1860 |
| Stack | -2.10 | External closing pair is G 1164-T 1859 |
| Stack | -2.40 | External closing pair is G 1165-C 1858 |
| Stack | -1.10 | External closing pair is A 1166-T 1857 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 1167-A 1856 |
| Stack | -2.50 | External closing pair is G 1174-T 1850 |
| Stack | -3.30 | External closing pair is C 1175-G 1849 |
| Stack | -2.10 | External closing pair is C 1176-G 1848 |
| Stack | -2.40 | External closing pair is T 1177-A 1847 |
| Stack | -2.10 | External closing pair is C 1178-G 1846 |
| Stack | -2.10 | External closing pair is A 1179-T 1845 |
| Helix | -14.50 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1180-C 1844 23 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is G 1196-C 1437 |
| Stack | -1.10 | External closing pair is A 1197-T 1436 |
| Stack | -2.40 | External closing pair is T 1198-A 1435 |
| Stack | -2.10 | External closing pair is C 1199-G 1434 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 0.10 | External closing pair is T 1200-A 1433 18 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1429 |
| Stack | -2.20 | External closing pair is G 1303-C 1428 |
| Stack | -1.30 | External closing pair is T 1304-A 1427 |
| Stack | -1.10 | External closing pair is A 1305-T 1426 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1306-A 1425 27 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -1.40 | External closing pair is G 1329-T 1365 |
| Stack | -0.90 | External closing pair is T 1330-A 1364 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1363 |
| Stack | -3.30 | External closing pair is C 1333-G 1361 |
| Stack | -2.10 | External closing pair is C 1334-G 1360 |
| Stack | -0.90 | External closing pair is A 1335-T 1359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1336-T 1358 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.30 | External closing pair is T 692-A 1160 |
| Stack | -1.10 | External closing pair is A 693-T 1159 |
| Stack | -1.30 | External closing pair is T 694-A 1158 |
| Stack | -1.10 | External closing pair is A 695-T 1157 |
| Helix | -4.80 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 696-A 1156 |
| Stack | -1.30 | External closing pair is T 698-A 1153 |
| Stack | -1.10 | External closing pair is A 699-T 1152 |
| Stack | -2.40 | External closing pair is T 700-A 1151 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 701-G 1150 |
| Stack | -3.40 | External closing pair is G 702-C 1148 |
| Stack | -2.10 | External closing pair is C 703-G 1147 |
| Stack | -2.10 | External closing pair is T 704-A 1146 |
| Stack | -2.20 | External closing pair is G 705-C 1145 |
| Stack | -1.30 | External closing pair is T 706-A 1144 |
| Helix | -11.10 | 6 base pairs. |
| Interior loop | 6.10 | External closing pair is A 707-T 1143 |
| Stack | -2.20 | External closing pair is A 709-T 1136 |
| Stack | -2.10 | External closing pair is C 710-G 1135 |
| Stack | -0.90 | External closing pair is A 711-T 1134 |
| Stack | -2.20 | External closing pair is A 712-T 1133 |
| Stack | -2.10 | External closing pair is C 713-G 1132 |
| Stack | -2.40 | External closing pair is T 714-A 1131 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | 2.50 | External closing pair is C 715-G 1130 |
| Stack | -1.30 | External closing pair is T 720-A 1124 |
| Stack | -0.60 | External closing pair is T 721-G 1123 |
| Helix | -1.90 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 722-A 1122 |
| Interior loop | -2.90 | External closing pair is T 724-G 1120 |
| Stack | -0.90 | External closing pair is A 727-T 1117 |
| Stack | -2.10 | External closing pair is A 728-T 1116 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | -0.60 | External closing pair is G 729-C 1115 32 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -3.30 | External closing pair is C 733-G 1075 |
| Stack | -1.40 | External closing pair is C 734-G 1074 |
| Stack | -2.10 | External closing pair is G 735-T 1073 |
| Stack | -3.40 | External closing pair is G 736-C 1072 |
| Stack | -2.10 | External closing pair is C 737-G 1071 |
| Stack | -0.90 | External closing pair is T 738-A 1070 |
| Stack | -2.40 | External closing pair is T 739-A 1069 |
| Helix | -15.60 | 8 base pairs. |
| Interior loop | 1.10 | External closing pair is C 740-G 1068 |
| Stack | -0.90 | External closing pair is T 742-A 1066 |
| Helix | -0.90 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 743-A 1065 |
| Stack | -1.30 | External closing pair is T 746-A 1062 |
| Stack | -0.90 | External closing pair is A 747-T 1061 |
| Stack | -0.60 | External closing pair is A 748-T 1060 |
| Helix | -2.80 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is G 749-T 1059 |
| Stack | -2.10 | External closing pair is T 752-A 1057 |
| Stack | -3.30 | External closing pair is G 753-C 1056 |
| Stack | -2.50 | External closing pair is G 754-C 1055 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 755-G 1054 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -2.10 | External closing pair is T 759-A 768 |
| Stack | -3.30 | External closing pair is G 760-C 767 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 761-C 766 |
| Stack | -1.40 | External closing pair is G 439-T 629 |
| Stack | -2.10 | External closing pair is T 440-A 628 |
| Stack | -2.20 | External closing pair is G 441-C 627 |
| Stack | -2.40 | External closing pair is T 442-A 626 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is C 443-G 625 |
| Stack | -0.90 | External closing pair is A 447-T 621 |
| Stack | -0.90 | External closing pair is A 448-T 620 |
| Stack | -2.20 | External closing pair is A 449-T 619 |
| Stack | -1.40 | External closing pair is C 450-G 618 |
| Stack | -2.10 | External closing pair is G 451-T 617 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 3.30 | External closing pair is G 452-C 616 |
| Stack | -0.90 | External closing pair is A 458-T 613 |
| Stack | -1.40 | External closing pair is A 459-T 612 |
| Stack | 0.30 | External closing pair is T 460-G 611 |
| Stack | -2.10 | External closing pair is G 461-T 610 |
| Stack | -2.40 | External closing pair is G 462-C 609 |
| Stack | -2.10 | External closing pair is A 463-T 608 |
| Stack | -2.40 | External closing pair is G 464-C 607 |
| Helix | -11.00 | 8 base pairs. |
| Interior loop | 4.10 | External closing pair is A 465-T 606 |
| Stack | -1.00 | External closing pair is T 467-A 602 |
| Stack | -1.30 | External closing pair is G 468-T 601 |
| Stack | -0.60 | External closing pair is A 469-T 600 |
| Stack | -1.30 | External closing pair is G 470-T 599 |
| Stack | -0.90 | External closing pair is A 471-T 598 |
| Stack | -0.90 | External closing pair is A 472-T 597 |
| Helix | -6.00 | 7 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 473-T 596 19 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 519-C 589 |
| Stack | -2.20 | External closing pair is G 520-C 588 |
| Stack | -1.00 | External closing pair is T 521-A 587 |
| Stack | -1.30 | External closing pair is G 522-T 586 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 523-T 585 |
| Stack | -2.10 | External closing pair is A 524-T 582 |
| Stack | -3.40 | External closing pair is G 525-C 581 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is C 526-G 580 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 486-A 517 |
| Stack | -1.10 | External closing pair is A 487-T 516 |
| Stack | -0.90 | External closing pair is T 488-A 515 |
| Stack | -0.90 | External closing pair is T 489-A 514 |
| Stack | -1.30 | External closing pair is T 490-A 513 |
| Stack | -1.40 | External closing pair is T 491-G 512 |
| Stack | -3.30 | External closing pair is G 492-C 511 |
| Helix | -10.20 | 8 base pairs. |
| Hairpin loop | 5.90 | Closing pair is G 493-C 510 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 27
seq.txt
ΔG = -811.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Bulge loop | 5.20 | External closing pair is T 361-G 2222 |
| Stack | -3.30 | External closing pair is C 362-G 2213 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 363-G 2212 |
| Stack | -1.30 | External closing pair is T 365-A 2210 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 366-G 2209 |
| Stack | -2.10 | External closing pair is T 369-A 2206 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.80 | External closing pair is G 370-C 2205 |
| Stack | -2.20 | External closing pair is G 373-C 2204 |
| Stack | -0.90 | External closing pair is T 374-A 2203 |
| Stack | -1.30 | External closing pair is T 375-A 2202 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 376-T 2201 |
| Stack | -2.20 | External closing pair is A 380-T 2198 |
| Stack | -2.10 | External closing pair is C 381-G 2197 |
| Stack | -2.10 | External closing pair is A 382-T 2196 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 383-C 2195 |
| Stack | -2.10 | External closing pair is T 384-A 2193 |
| Stack | -2.20 | External closing pair is G 385-C 2192 |
| Stack | -0.90 | External closing pair is T 386-A 2191 |
| Stack | -2.10 | External closing pair is T 387-A 2190 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 388-C 2189 |
| Stack | -2.20 | External closing pair is A 389-T 2187 |
| Stack | -3.30 | External closing pair is C 390-G 2186 |
| Stack | -2.10 | External closing pair is C 391-G 2185 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 392-T 2184 |
| Stack | -1.00 | External closing pair is T 393-G 2182 |
| Stack | -2.20 | External closing pair is A 394-T 2181 |
| Stack | -3.30 | External closing pair is C 395-G 2180 |
| Stack | -2.10 | External closing pair is C 396-G 2179 |
| Stack | -2.10 | External closing pair is A 397-T 2178 |
| Helix | -10.70 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 398-C 2177 26 ss bases & 4 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.20 | External closing pair is G 410-C 2109 |
| Stack | -2.10 | External closing pair is T 411-A 2108 |
| Stack | -2.40 | External closing pair is G 412-C 2107 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 413-T 2106 |
| Stack | -1.30 | External closing pair is G 415-T 2104 |
| Stack | -2.10 | External closing pair is A 416-T 2103 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 4.20 | External closing pair is G 417-C 2102 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -3.30 | External closing pair is C 418-G 2078 |
| Stack | -2.10 | External closing pair is C 419-G 2077 |
| Stack | -0.90 | External closing pair is A 420-T 2076 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 421-T 2075 |
| Stack | -1.40 | External closing pair is A 424-T 2072 |
| Stack | -1.00 | External closing pair is T 425-G 2071 |
| Stack | -2.20 | External closing pair is A 426-T 2070 |
| Stack | -3.30 | External closing pair is C 427-G 2069 |
| Stack | -2.10 | External closing pair is C 428-G 2068 |
| Stack | -0.90 | External closing pair is A 429-T 2067 |
| Stack | -2.20 | External closing pair is A 430-T 2066 |
| Stack | -2.10 | External closing pair is C 431-G 2065 |
| Stack | -2.10 | External closing pair is T 432-A 2064 |
| Helix | -17.30 | 10 base pairs. |
| Multi-loop | 1.10 | External closing pair is G 433-C 2063 10 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is T 849-A 2044 |
| Stack | -2.40 | External closing pair is G 850-C 2043 |
| Stack | -2.20 | External closing pair is A 851-T 2042 |
| Stack | -2.10 | External closing pair is C 852-G 2041 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 4.60 | External closing pair is A 853-T 2040 |
| Stack | -2.20 | External closing pair is A 862-T 2034 |
| Stack | -1.40 | External closing pair is C 863-G 2033 |
| Stack | -2.10 | External closing pair is G 864-T 2032 |
| Stack | -2.50 | External closing pair is G 865-C 2031 |
| Stack | -1.00 | External closing pair is T 866-G 2030 |
| Stack | -0.90 | External closing pair is A 867-T 2029 |
| Stack | -2.10 | External closing pair is A 868-T 2028 |
| Stack | -3.40 | External closing pair is G 869-C 2027 |
| Helix | -15.60 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 870-G 2026 15 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -10.00 | 9 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.30 | External closing pair is G 885-C 1991 |
| Stack | -3.40 | External closing pair is G 886-C 1990 |
| Helix | -6.70 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is C 887-G 1989 |
| Stack | -0.90 | External closing pair is T 892-A 1984 |
| Stack | -0.90 | External closing pair is T 893-A 1983 |
| Stack | -2.40 | External closing pair is T 894-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is C 895-G 1981 17 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 898-C 1949 |
| Stack | -0.90 | External closing pair is A 899-T 1948 |
| Stack | -0.60 | External closing pair is A 900-T 1947 |
| Stack | -2.10 | External closing pair is G 901-T 1946 |
| Stack | -2.20 | External closing pair is G 902-C 1945 |
| Stack | -2.10 | External closing pair is T 903-A 1944 |
| Stack | -3.40 | External closing pair is G 904-C 1943 |
| Stack | -3.30 | External closing pair is C 905-G 1942 |
| Stack | -2.10 | External closing pair is C 906-G 1941 |
| Helix | -19.10 | 10 base pairs. |
| Interior loop | 4.20 | External closing pair is T 907-A 1940 |
| Stack | -2.40 | External closing pair is T 914-A 1936 |
| Stack | -3.30 | External closing pair is C 915-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Interior loop | 1.40 | External closing pair is C 916-G 1934 |
| Stack | -1.30 | External closing pair is G 919-T 1932 |
| Stack | -2.20 | External closing pair is A 920-T 1931 |
| Stack | -2.10 | External closing pair is C 921-G 1930 |
| Stack | -1.30 | External closing pair is T 922-A 1929 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 4.70 | External closing pair is A 923-T 1928 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 967-T 1927 |
| Stack | -1.30 | External closing pair is G 968-T 1926 |
| Stack | -2.20 | External closing pair is A 969-T 1925 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 970-G 1924 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1225-C 1922 |
| Stack | -2.10 | External closing pair is C 1226-G 1921 |
| Stack | -1.40 | External closing pair is A 1227-T 1920 |
| Helix | -6.90 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1228-G 1919 |
| Stack | -2.10 | External closing pair is A 1230-T 1917 |
| Stack | -2.20 | External closing pair is G 1231-C 1916 |
| Stack | -0.90 | External closing pair is T 1232-A 1915 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1233-A 1914 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1257-G 1909 |
| Stack | -2.10 | External closing pair is C 1258-G 1908 |
| Stack | -1.30 | External closing pair is T 1259-A 1907 |
| Stack | -0.60 | External closing pair is T 1260-G 1906 |
| Stack | -1.30 | External closing pair is T 1261-A 1905 |
| Helix | -8.60 | 6 base pairs. |
| Interior loop | 1.90 | External closing pair is A 1262-T 1904 |
| Stack | -0.90 | External closing pair is T 1265-A 1900 |
| Stack | -0.90 | External closing pair is T 1266-A 1899 |
| Stack | -0.90 | External closing pair is T 1267-A 1898 |
| Stack | -2.40 | External closing pair is T 1268-A 1897 |
| Helix | -5.10 | 5 base pairs. |
| Multi-loop | -1.20 | External closing pair is C 1269-G 1896 24 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is G 1273-C 1863 |
| Stack | -1.40 | External closing pair is A 1274-T 1862 |
| Stack | -1.00 | External closing pair is T 1275-G 1861 |
| Stack | -0.90 | External closing pair is A 1276-T 1860 |
| Stack | -2.10 | External closing pair is A 1277-T 1859 |
| Helix | -7.80 | 6 base pairs. |
| Multi-loop | 0.10 | External closing pair is G 1278-C 1858 31 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -0.90 | External closing pair is T 974-A 1222 |
| Stack | -2.40 | External closing pair is T 975-A 1221 |
| Stack | -3.30 | External closing pair is C 976-G 1220 |
| Stack | -3.30 | External closing pair is C 977-G 1219 |
| Stack | -1.40 | External closing pair is C 978-G 1218 |
| Stack | -2.10 | External closing pair is G 979-T 1217 |
| Stack | -2.40 | External closing pair is G 980-C 1216 |
| Helix | -15.80 | 8 base pairs. |
| Interior loop | 4.70 | External closing pair is A 981-T 1215 |
| Stack | -1.00 | External closing pair is T 983-A 1210 |
| Stack | -2.10 | External closing pair is G 984-T 1209 |
| Stack | -2.50 | External closing pair is G 985-C 1208 |
| Stack | -1.50 | External closing pair is T 986-G 1207 |
| Stack | -2.10 | External closing pair is C 987-G 1206 |
| Helix | -9.20 | 6 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 988-T 1205 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -2.50 | External closing pair is G 995-C 1175 |
| Stack | -1.00 | External closing pair is T 996-G 1174 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 997-T 1173 |
| Stack | -0.90 | External closing pair is T 998-A 1171 |
| Stack | -0.90 | External closing pair is T 999-A 1170 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | -2.50 | External closing pair is T 1000-A 1169 |
| Stack | -2.40 | External closing pair is T 1003-A 1166 |
| Stack | -2.10 | External closing pair is C 1004-G 1165 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1005-G 1164 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -3.40 | External closing pair is G 1014-C 1030 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1015-G 1029 |
| Stack | -2.10 | External closing pair is A 1017-T 1027 |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.20 | External closing pair is A 435-T 846 |
| Stack | -2.10 | External closing pair is C 436-G 845 |
| Stack | -1.30 | External closing pair is T 437-A 844 |
| Stack | -0.60 | External closing pair is A 438-T 843 |
| Stack | -1.40 | External closing pair is G 439-T 842 |
| Helix | -7.60 | 6 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 440-A 841 |
| Stack | -2.40 | External closing pair is T 442-A 840 |
| Stack | -2.10 | External closing pair is C 443-G 839 |
| Stack | -2.10 | External closing pair is T 444-A 838 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 445-C 837 |
| Stack | -3.30 | External closing pair is G 451-C 835 |
| Stack | -2.40 | External closing pair is G 452-C 834 |
| Stack | -0.90 | External closing pair is A 453-T 833 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 454-T 832 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -0.90 | External closing pair is A 457-T 771 |
| Stack | -0.90 | External closing pair is A 458-T 770 |
| Stack | -1.10 | External closing pair is A 459-T 769 |
| Stack | -2.10 | External closing pair is T 460-A 768 |
| Stack | -3.30 | External closing pair is G 461-C 767 |
| Helix | -8.30 | 6 base pairs. |
| Multi-loop | 0.90 | External closing pair is G 462-C 766 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is C 474-G 614 |
| Stack | -0.90 | External closing pair is A 475-T 613 |
| Stack | -2.20 | External closing pair is A 476-T 612 |
| Stack | -2.10 | External closing pair is C 477-G 611 |
| Stack | -2.10 | External closing pair is A 478-T 610 |
| Helix | -9.40 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is G 479-C 609 26 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 519-C 589 |
| Stack | -2.20 | External closing pair is G 520-C 588 |
| Stack | -1.00 | External closing pair is T 521-A 587 |
| Stack | -1.30 | External closing pair is G 522-T 586 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 523-T 585 |
| Stack | -2.10 | External closing pair is A 524-T 582 |
| Stack | -3.40 | External closing pair is G 525-C 581 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is C 526-G 580 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 486-A 517 |
| Stack | -1.10 | External closing pair is A 487-T 516 |
| Stack | -0.90 | External closing pair is T 488-A 515 |
| Stack | -0.90 | External closing pair is T 489-A 514 |
| Stack | -1.30 | External closing pair is T 490-A 513 |
| Stack | -1.40 | External closing pair is T 491-G 512 |
| Stack | -3.30 | External closing pair is G 492-C 511 |
| Helix | -10.20 | 8 base pairs. |
| Hairpin loop | 5.90 | Closing pair is G 493-C 510 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 28
seq.txt
ΔG = -810.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 384-G 2030 7 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 525-C 1990 |
| Stack | -2.10 | External closing pair is C 526-G 1989 |
| Stack | -0.90 | External closing pair is A 527-T 1988 |
| Stack | -1.10 | External closing pair is A 528-T 1987 |
| Stack | -0.90 | External closing pair is T 529-A 1986 |
| Stack | -0.90 | External closing pair is T 530-A 1985 |
| Stack | -0.90 | External closing pair is T 531-A 1984 |
| Helix | -10.20 | 8 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 532-A 1983 8 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1980 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1942-C 1979 |
| Stack | -2.20 | External closing pair is A 1944-T 1976 |
| Stack | -2.10 | External closing pair is C 1945-G 1975 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1946-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 611-T 1892 |
| Stack | -0.90 | External closing pair is T 612-A 1874 |
| Stack | -1.00 | External closing pair is T 613-A 1873 |
| Stack | -2.50 | External closing pair is G 614-T 1872 |
| Stack | -3.30 | External closing pair is C 615-G 1871 |
| Helix | -7.70 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 616-G 1870 |
| Stack | -2.20 | External closing pair is G 618-C 1869 |
| Stack | -0.90 | External closing pair is T 619-A 1868 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 4.00 | External closing pair is T 620-A 1867 |
| Stack | -1.40 | External closing pair is A 623-T 1865 |
| Stack | -1.40 | External closing pair is T 624-G 1864 |
| Stack | -2.40 | External closing pair is G 625-C 1863 |
| Stack | -2.20 | External closing pair is A 626-T 1862 |
| Stack | -2.10 | External closing pair is C 627-G 1861 |
| Helix | -9.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 628-T 1860 |
| Stack | -2.40 | External closing pair is G 630-C 1858 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 631-T 1857 |
| Stack | -1.50 | External closing pair is G 632-C 1853 |
| Stack | -1.30 | External closing pair is G 633-T 1852 |
| Stack | -0.90 | External closing pair is A 634-T 1851 |
| Helix | -3.70 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is A 635-T 1850 |
| Stack | -2.40 | External closing pair is T 638-A 1847 |
| Stack | -1.40 | External closing pair is C 639-G 1846 |
| Stack | -2.10 | External closing pair is G 640-T 1845 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 1844 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 666-A 1823 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 667-C 1822 |
| Stack | -2.40 | External closing pair is T 669-A 1820 |
| Stack | -2.10 | External closing pair is C 670-G 1819 |
| Stack | -0.90 | External closing pair is T 671-A 1818 |
| Stack | -0.90 | External closing pair is T 672-A 1817 |
| Stack | -2.40 | External closing pair is T 673-A 1816 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 674-G 1815 13 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -3.40 | External closing pair is G 682-C 1757 |
| Stack | -2.10 | External closing pair is C 683-G 1756 |
| Stack | -1.10 | External closing pair is A 684-T 1755 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 685-A 1754 |
| Stack | -2.50 | External closing pair is G 686-T 1751 |
| Stack | -2.40 | External closing pair is C 687-G 1750 |
| Stack | -3.40 | External closing pair is G 688-C 1749 |
| Stack | -2.10 | External closing pair is C 689-G 1748 |
| Stack | -1.10 | External closing pair is A 690-T 1747 |
| Helix | -11.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 691-A 1746 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.30 | External closing pair is T 692-A 1716 |
| Stack | -1.10 | External closing pair is A 693-T 1715 |
| Stack | -1.30 | External closing pair is T 694-A 1714 |
| Stack | -1.10 | External closing pair is A 695-T 1713 |
| Stack | -1.30 | External closing pair is T 696-A 1712 |
| Stack | -0.60 | External closing pair is T 697-G 1711 |
| Helix | -6.70 | 7 base pairs. |
| Interior loop | 1.70 | External closing pair is T 698-A 1710 |
| Stack | -2.40 | External closing pair is T 700-A 1708 |
| Stack | -2.40 | External closing pair is C 701-G 1707 |
| Stack | -3.40 | External closing pair is G 702-C 1706 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 703-G 1705 |
| Stack | -2.20 | External closing pair is G 705-C 1703 |
| Helix | -2.20 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 706-A 1702 |
| Stack | -2.10 | External closing pair is C 708-G 1701 |
| Stack | -2.20 | External closing pair is A 709-T 1700 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 710-G 1699 15 ss bases & 5 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1696 |
| Stack | -2.10 | External closing pair is A 1649-T 1695 |
| Stack | -2.20 | External closing pair is G 1650-C 1694 |
| Stack | -0.90 | External closing pair is T 1651-A 1693 |
| Stack | -0.90 | External closing pair is T 1652-A 1692 |
| Stack | -1.30 | External closing pair is T 1653-A 1691 |
| Helix | -9.80 | 7 base pairs. |
| Bulge loop | 4.50 | External closing pair is T 1654-G 1690 |
| Stack | -2.10 | External closing pair is C 1655-G 1684 |
| Stack | -2.10 | External closing pair is A 1656-T 1683 |
| Stack | -2.40 | External closing pair is G 1657-C 1682 |
| Stack | -0.90 | External closing pair is A 1658-T 1681 |
| Helix | -7.50 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 1659-T 1680 |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 963-A 1631 |
| Stack | -3.40 | External closing pair is G 964-C 1630 |
| Stack | -2.10 | External closing pair is C 965-G 1629 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 0.00 | External closing pair is T 966-A 1628 |
| Stack | -2.20 | External closing pair is A 969-T 1625 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 970-G 1624 15 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 979-C 1595 |
| Helix | -3.30 | 2 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 980-C 1594 |
| Stack | -0.90 | External closing pair is T 982-A 1593 |
| Stack | -2.10 | External closing pair is T 983-A 1592 |
| Stack | -3.30 | External closing pair is G 984-C 1591 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is G 985-C 1590 |
| Stack | -0.90 | External closing pair is T 991-A 1586 |
| Stack | -2.40 | External closing pair is T 992-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 993-G 1584 |
| Stack | -2.10 | External closing pair is T 994-A 1582 |
| Stack | -2.20 | External closing pair is G 995-C 1581 |
| Stack | -1.30 | External closing pair is T 996-A 1580 |
| Stack | -1.10 | External closing pair is A 997-T 1579 |
| Stack | -1.30 | External closing pair is T 998-A 1578 |
| Stack | -0.50 | External closing pair is T 999-G 1577 |
| Stack | -0.60 | External closing pair is T 1000-G 1576 |
| Stack | -2.10 | External closing pair is T 1001-A 1575 |
| Stack | -2.20 | External closing pair is G 1002-C 1574 |
| Helix | -13.40 | 10 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1003-A 1573 30 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1511-A 1567 |
| Stack | -0.90 | External closing pair is T 1512-A 1566 |
| Stack | -0.90 | External closing pair is T 1513-A 1565 |
| Stack | -0.90 | External closing pair is T 1514-A 1564 |
| Stack | -2.10 | External closing pair is T 1515-A 1563 |
| Stack | -3.40 | External closing pair is G 1516-C 1562 |
| Stack | -2.10 | External closing pair is C 1517-G 1561 |
| Helix | -11.20 | 8 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 1518-T 1560 |
| Stack | -3.40 | External closing pair is G 1522-C 1559 |
| Stack | -2.10 | External closing pair is C 1523-G 1558 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1524-T 1557 |
| Stack | -1.30 | External closing pair is T 1526-A 1555 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -7.90 | 6 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -1.30 | External closing pair is G 1024-T 1505 |
| Stack | -2.20 | External closing pair is A 1025-T 1504 |
| Stack | -2.10 | External closing pair is C 1026-G 1503 |
| Stack | -0.90 | External closing pair is T 1027-A 1502 |
| Stack | -2.10 | External closing pair is T 1028-A 1501 |
| Stack | -3.40 | External closing pair is G 1029-C 1500 |
| Stack | -2.10 | External closing pair is C 1030-G 1499 |
| Helix | -14.10 | 8 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1031-A 1498 14 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -0.90 | External closing pair is A 1121-T 1455 |
| Stack | -2.10 | External closing pair is A 1122-T 1454 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1123-C 1453 |
| Stack | -2.10 | External closing pair is A 1124-T 1451 |
| Stack | -1.50 | External closing pair is G 1125-C 1450 |
| Stack | -1.30 | External closing pair is G 1126-T 1449 |
| Stack | -2.20 | External closing pair is A 1127-T 1448 |
| Stack | -1.40 | External closing pair is C 1128-G 1447 |
| Stack | -2.10 | External closing pair is G 1129-T 1446 |
| Stack | -2.40 | External closing pair is G 1130-C 1445 |
| Stack | -0.60 | External closing pair is A 1131-T 1444 |
| Stack | -1.40 | External closing pair is G 1132-T 1443 |
| Stack | -1.30 | External closing pair is T 1133-A 1442 |
| Helix | -16.30 | 11 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1134-G 1441 |
| Stack | -2.40 | External closing pair is T 1136-A 1439 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1137-G 1438 30 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -1.30 | External closing pair is T 1032-A 1114 |
| Stack | -0.60 | External closing pair is T 1033-G 1113 |
| Stack | -2.10 | External closing pair is T 1034-A 1112 |
| Stack | -2.20 | External closing pair is G 1035-C 1111 |
| Stack | -2.40 | External closing pair is T 1036-A 1110 |
| Stack | -2.10 | External closing pair is C 1037-G 1109 |
| Stack | -2.10 | External closing pair is T 1038-A 1108 |
| Helix | -12.80 | 8 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1039-C 1107 |
| Stack | -2.40 | External closing pair is T 1051-A 1095 |
| Stack | -2.10 | External closing pair is C 1052-G 1094 |
| Stack | -2.10 | External closing pair is T 1053-A 1093 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is G 1054-C 1092 |
| Stack | -2.10 | External closing pair is T 1067-A 1091 |
| Stack | -2.40 | External closing pair is G 1068-C 1090 |
| Stack | -0.90 | External closing pair is A 1069-T 1089 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 2.60 | External closing pair is A 1070-T 1088 |
| Stack | -2.10 | External closing pair is T 1073-A 1084 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 1074-C 1083 |
| Stack | -2.10 | External closing pair is C 715-G 955 |
| Stack | -2.20 | External closing pair is A 716-T 954 |
| Stack | -2.10 | External closing pair is C 717-G 953 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 718-T 952 |
| Stack | -1.30 | External closing pair is T 720-A 951 |
| Stack | -0.50 | External closing pair is T 721-G 950 |
| Stack | -1.00 | External closing pair is T 722-G 949 |
| Helix | -2.80 | 4 base pairs. |
| Interior loop | 1.20 | External closing pair is A 723-T 948 |
| Stack | -2.10 | External closing pair is T 725-A 946 |
| Stack | -2.40 | External closing pair is G 726-C 945 |
| Stack | -0.90 | External closing pair is A 727-T 944 |
| Stack | -2.10 | External closing pair is A 728-T 943 |
| Helix | -7.50 | 5 base pairs. |
| Interior loop | 4.70 | External closing pair is G 729-C 942 |
| Stack | -2.10 | External closing pair is G 735-T 940 |
| Stack | -3.40 | External closing pair is G 736-C 939 |
| Stack | -2.10 | External closing pair is C 737-G 938 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is T 738-A 937 |
| Stack | -1.30 | External closing pair is T 746-A 927 |
| Stack | -0.90 | External closing pair is A 747-T 926 |
| Stack | -2.10 | External closing pair is A 748-T 925 |
| Stack | -2.20 | External closing pair is G 749-C 924 |
| Helix | -6.50 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 750-A 923 |
| Stack | -2.10 | External closing pair is G 753-T 922 |
| Stack | -2.20 | External closing pair is G 754-C 921 |
| Stack | -2.40 | External closing pair is T 755-A 920 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 756-G 919 14 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 787-C 916 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.10 | External closing pair is G 788-C 915 |
| Stack | -0.90 | External closing pair is T 791-A 913 |
| Stack | -1.30 | External closing pair is T 792-A 912 |
| Stack | -0.90 | External closing pair is A 793-T 911 |
| Stack | -2.10 | External closing pair is A 794-T 910 |
| Helix | -5.20 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 795-C 909 8 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 813-C 906 |
| Stack | -3.40 | External closing pair is G 814-C 905 |
| Stack | -2.10 | External closing pair is C 815-G 904 |
| Stack | -1.40 | External closing pair is A 816-T 903 |
| Helix | -10.20 | 5 base pairs. |
| Interior loop | -0.20 | External closing pair is T 817-G 902 |
| Stack | -2.40 | External closing pair is T 820-A 899 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 2.20 | External closing pair is C 821-G 898 |
| Stack | -2.20 | External closing pair is A 825-T 892 |
| Stack | -2.10 | External closing pair is C 826-G 891 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 827-T 890 27 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 868-T 888 |
| Stack | -3.40 | External closing pair is G 869-C 887 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.00 | External closing pair is C 870-G 886 |
| Stack | -2.10 | External closing pair is C 873-G 883 |
| Stack | -1.10 | External closing pair is A 874-T 882 |
| Helix | -3.20 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 875-A 881 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -2.20 | External closing pair is A 762-T 779 |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -7.80 | 5 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Interior loop | -0.40 | External closing pair is T 387-A 523 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 29
seq.txt
ΔG = -809.60
| Structural element | δG | Information |
|---|---|---|
| External loop | -4.30 | 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 2644-C 3128 |
| Stack | -0.60 | External closing pair is T 2645-G 3127 |
| Stack | -2.10 | External closing pair is T 2646-A 3126 |
| Stack | -2.40 | External closing pair is G 2647-C 3125 |
| Helix | -7.60 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 2648-T 3124 30 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -3.40 | External closing pair is G 811-C 2639 |
| Stack | -2.40 | External closing pair is C 812-G 2638 |
| Stack | -3.30 | External closing pair is G 813-C 2637 |
| Helix | -9.10 | 4 base pairs. |
| Interior loop | 3.20 | External closing pair is G 814-C 2636 |
| Stack | -2.40 | External closing pair is T 820-A 2630 |
| Stack | -2.40 | External closing pair is C 821-G 2629 |
| Stack | -3.40 | External closing pair is G 822-C 2628 |
| Stack | -2.10 | External closing pair is C 823-G 2627 |
| Helix | -10.30 | 5 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 824-A 2626 25 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -0.90 | External closing pair is T 832-A 2098 |
| Stack | -2.40 | External closing pair is T 833-A 2097 |
| Stack | -3.30 | External closing pair is C 834-G 2096 |
| Stack | -2.10 | External closing pair is C 835-G 2095 |
| Helix | -8.70 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 836-T 2094 |
| Stack | -2.10 | External closing pair is C 837-G 2092 |
| Stack | -0.60 | External closing pair is A 838-T 2091 |
| Helix | -2.70 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 839-T 2090 |
| Stack | -0.90 | External closing pair is A 840-T 2088 |
| Stack | -1.10 | External closing pair is A 841-T 2087 |
| Stack | -0.90 | External closing pair is T 842-A 2086 |
| Stack | -1.30 | External closing pair is T 843-A 2085 |
| Stack | -0.60 | External closing pair is A 844-T 2084 |
| Stack | -1.40 | External closing pair is G 845-T 2083 |
| Helix | -6.20 | 7 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 846-A 2082 5 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2047-C 2080 |
| Stack | -2.50 | External closing pair is G 2048-T 2079 |
| Stack | -2.10 | External closing pair is C 2049-G 2078 |
| Stack | -1.00 | External closing pair is T 2050-G 2077 |
| Helix | -7.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 2051-T 2076 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -2.10 | External closing pair is T 849-A 2044 |
| Stack | -2.40 | External closing pair is G 850-C 2043 |
| Stack | -2.20 | External closing pair is A 851-T 2042 |
| Stack | -2.10 | External closing pair is C 852-G 2041 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 4.60 | External closing pair is A 853-T 2040 |
| Stack | -2.20 | External closing pair is A 862-T 2034 |
| Stack | -1.40 | External closing pair is C 863-G 2033 |
| Stack | -2.10 | External closing pair is G 864-T 2032 |
| Stack | -2.50 | External closing pair is G 865-C 2031 |
| Stack | -1.00 | External closing pair is T 866-G 2030 |
| Stack | -0.90 | External closing pair is A 867-T 2029 |
| Stack | -2.10 | External closing pair is A 868-T 2028 |
| Stack | -3.40 | External closing pair is G 869-C 2027 |
| Helix | -15.60 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 870-G 2026 15 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -10.00 | 9 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.30 | External closing pair is G 885-C 1991 |
| Stack | -3.40 | External closing pair is G 886-C 1990 |
| Helix | -6.70 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is C 887-G 1989 |
| Stack | -0.90 | External closing pair is T 892-A 1984 |
| Stack | -0.90 | External closing pair is T 893-A 1983 |
| Stack | -2.40 | External closing pair is T 894-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is C 895-G 1981 17 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 898-C 1949 |
| Stack | -0.90 | External closing pair is A 899-T 1948 |
| Stack | -0.60 | External closing pair is A 900-T 1947 |
| Stack | -2.10 | External closing pair is G 901-T 1946 |
| Stack | -2.20 | External closing pair is G 902-C 1945 |
| Stack | -2.10 | External closing pair is T 903-A 1944 |
| Stack | -3.40 | External closing pair is G 904-C 1943 |
| Stack | -3.30 | External closing pair is C 905-G 1942 |
| Stack | -2.10 | External closing pair is C 906-G 1941 |
| Helix | -19.10 | 10 base pairs. |
| Interior loop | 4.20 | External closing pair is T 907-A 1940 |
| Stack | -2.40 | External closing pair is T 914-A 1936 |
| Stack | -3.30 | External closing pair is C 915-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Interior loop | 1.40 | External closing pair is C 916-G 1934 |
| Stack | -1.30 | External closing pair is G 919-T 1932 |
| Stack | -2.20 | External closing pair is A 920-T 1931 |
| Stack | -2.10 | External closing pair is C 921-G 1930 |
| Stack | -1.30 | External closing pair is T 922-A 1929 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 4.70 | External closing pair is A 923-T 1928 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 967-T 1927 |
| Stack | -1.30 | External closing pair is G 968-T 1926 |
| Stack | -2.20 | External closing pair is A 969-T 1925 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 970-G 1924 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1225-C 1922 |
| Stack | -2.10 | External closing pair is C 1226-G 1921 |
| Stack | -1.40 | External closing pair is A 1227-T 1920 |
| Helix | -6.90 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1228-G 1919 |
| Stack | -2.10 | External closing pair is A 1230-T 1917 |
| Stack | -2.20 | External closing pair is G 1231-C 1916 |
| Stack | -0.90 | External closing pair is T 1232-A 1915 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1233-A 1914 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1257-G 1909 |
| Stack | -2.10 | External closing pair is C 1258-G 1908 |
| Stack | -1.30 | External closing pair is T 1259-A 1907 |
| Stack | -0.60 | External closing pair is T 1260-G 1906 |
| Stack | -1.30 | External closing pair is T 1261-A 1905 |
| Helix | -8.60 | 6 base pairs. |
| Interior loop | 1.90 | External closing pair is A 1262-T 1904 |
| Stack | -0.90 | External closing pair is T 1265-A 1900 |
| Stack | -0.90 | External closing pair is T 1266-A 1899 |
| Stack | -0.90 | External closing pair is T 1267-A 1898 |
| Stack | -2.40 | External closing pair is T 1268-A 1897 |
| Helix | -5.10 | 5 base pairs. |
| Multi-loop | -1.20 | External closing pair is C 1269-G 1896 24 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is G 1273-C 1863 |
| Stack | -1.40 | External closing pair is A 1274-T 1862 |
| Stack | -1.00 | External closing pair is T 1275-G 1861 |
| Stack | -0.90 | External closing pair is A 1276-T 1860 |
| Stack | -2.10 | External closing pair is A 1277-T 1859 |
| Helix | -7.80 | 6 base pairs. |
| Multi-loop | 0.10 | External closing pair is G 1278-C 1858 31 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -0.90 | External closing pair is T 974-A 1222 |
| Stack | -2.40 | External closing pair is T 975-A 1221 |
| Stack | -3.30 | External closing pair is C 976-G 1220 |
| Stack | -3.30 | External closing pair is C 977-G 1219 |
| Stack | -1.40 | External closing pair is C 978-G 1218 |
| Stack | -2.10 | External closing pair is G 979-T 1217 |
| Stack | -2.40 | External closing pair is G 980-C 1216 |
| Helix | -15.80 | 8 base pairs. |
| Interior loop | 4.70 | External closing pair is A 981-T 1215 |
| Stack | -1.00 | External closing pair is T 983-A 1210 |
| Stack | -2.10 | External closing pair is G 984-T 1209 |
| Stack | -2.50 | External closing pair is G 985-C 1208 |
| Stack | -1.50 | External closing pair is T 986-G 1207 |
| Stack | -2.10 | External closing pair is C 987-G 1206 |
| Helix | -9.20 | 6 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 988-T 1205 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -2.50 | External closing pair is G 995-C 1175 |
| Stack | -1.00 | External closing pair is T 996-G 1174 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 997-T 1173 |
| Stack | -0.90 | External closing pair is T 998-A 1171 |
| Stack | -0.90 | External closing pair is T 999-A 1170 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | -2.50 | External closing pair is T 1000-A 1169 |
| Stack | -2.40 | External closing pair is T 1003-A 1166 |
| Stack | -2.10 | External closing pair is C 1004-G 1165 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1005-G 1164 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -3.40 | External closing pair is G 1014-C 1030 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1015-G 1029 |
| Stack | -2.10 | External closing pair is A 1017-T 1027 |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.20 | External closing pair is G 3-C 808 |
| Stack | -2.40 | External closing pair is T 4-A 807 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is C 5-G 806 |
| Stack | -2.20 | External closing pair is A 6-T 803 |
| Stack | -2.10 | External closing pair is C 7-G 802 |
| Stack | -0.90 | External closing pair is T 8-A 801 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is T 9-A 800 |
| Stack | -2.10 | External closing pair is C 12-G 795 |
| Stack | -0.90 | External closing pair is T 13-A 794 |
| Stack | -1.30 | External closing pair is T 14-A 793 |
| Stack | -0.90 | External closing pair is A 15-T 792 |
| Stack | -0.90 | External closing pair is A 16-T 791 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 17-T 790 |
| Stack | -1.40 | External closing pair is C 20-G 787 |
| Stack | -1.30 | External closing pair is G 21-T 786 |
| Stack | -1.10 | External closing pair is A 22-T 785 |
| Stack | -1.30 | External closing pair is T 23-A 784 |
| Stack | -0.60 | External closing pair is A 24-T 783 |
| Stack | -1.40 | External closing pair is G 25-T 782 |
| Helix | -7.10 | 7 base pairs. |
| Multi-loop | 3.50 | External closing pair is T 26-A 781 4 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 115-T 779 |
| Stack | -2.10 | External closing pair is C 116-G 778 |
| Stack | -1.00 | External closing pair is T 117-A 777 |
| Stack | -2.50 | External closing pair is G 118-T 776 |
| Helix | -8.10 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is C 119-G 775 16 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 759-A 768 |
| Stack | -3.30 | External closing pair is G 760-C 767 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 761-C 766 |
| Stack | -1.40 | External closing pair is G 130-T 758 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -2.10 | External closing pair is C 28-G 112 |
| Stack | -1.40 | External closing pair is A 29-T 111 |
| Stack | -0.60 | External closing pair is T 30-G 110 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | -2.90 | External closing pair is T 31-A 109 |
| Stack | -1.40 | External closing pair is G 34-T 106 |
| Stack | -1.30 | External closing pair is T 35-A 105 |
| Stack | -0.90 | External closing pair is A 36-T 104 |
| Stack | -0.90 | External closing pair is A 37-T 103 |
| Stack | -0.60 | External closing pair is A 38-T 102 |
| Stack | -2.50 | External closing pair is G 39-T 101 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 40-G 100 13 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 77-G 97 |
| Stack | -0.90 | External closing pair is A 78-T 96 |
| Stack | -1.40 | External closing pair is A 79-T 95 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is T 80-G 94 |
| Stack | -2.20 | External closing pair is A 83-T 92 |
| Stack | -1.40 | External closing pair is C 84-G 91 |
| Helix | -3.60 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 85-T 90 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 30
seq.txt
ΔG = -809.60
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 384-G 2030 9 ss bases & 4 closing helices. |
| Stack | -0.60 | External closing pair is T 1887-G 2026 |
| Stack | -2.40 | External closing pair is T 1888-A 2025 |
| Stack | -3.30 | External closing pair is C 1889-G 2024 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 1890-G 2023 |
| Stack | -0.60 | External closing pair is A 1893-T 2020 |
| Stack | -1.30 | External closing pair is G 1894-T 2019 |
| Helix | -1.90 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is A 1895-T 2018 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1921-C 2016 |
| Stack | -2.40 | External closing pair is C 1922-G 2015 |
| Stack | -1.50 | External closing pair is G 1923-C 2014 |
| Stack | -1.40 | External closing pair is G 1924-T 2013 |
| Stack | -1.30 | External closing pair is T 1925-A 2012 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1926-G 2011 |
| Stack | -1.30 | External closing pair is T 1928-A 2009 |
| Stack | -0.60 | External closing pair is A 1929-T 2008 |
| Stack | -1.40 | External closing pair is G 1930-T 2007 |
| Stack | -1.30 | External closing pair is T 1931-A 2006 |
| Stack | -1.00 | External closing pair is T 1932-G 2005 |
| Helix | -5.60 | 6 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1933-T 2004 |
| Stack | -2.40 | External closing pair is G 1937-C 1995 |
| Stack | -0.90 | External closing pair is A 1938-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1939-T 1993 |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.20 | External closing pair is G 385-C 1869 |
| Stack | -0.90 | External closing pair is T 386-A 1868 |
| Stack | -2.10 | External closing pair is T 387-A 1867 |
| Stack | -2.40 | External closing pair is G 388-C 1866 |
| Stack | -2.20 | External closing pair is A 389-T 1865 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 390-G 1864 27 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1352-T 1860 |
| Stack | -2.10 | External closing pair is A 1353-T 1859 |
| Stack | -2.40 | External closing pair is G 1354-C 1858 |
| Stack | -1.10 | External closing pair is A 1355-T 1857 |
| Helix | -6.50 | 5 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1356-A 1856 |
| Stack | -1.30 | External closing pair is T 1358-A 1855 |
| Stack | -1.40 | External closing pair is T 1359-G 1854 |
| Stack | -1.50 | External closing pair is G 1360-C 1853 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 1361-T 1852 |
| Stack | -0.90 | External closing pair is A 1363-T 1851 |
| Stack | -1.40 | External closing pair is A 1364-T 1850 |
| Stack | -1.50 | External closing pair is T 1365-G 1849 |
| Stack | -2.10 | External closing pair is C 1366-G 1848 |
| Stack | -2.40 | External closing pair is T 1367-A 1847 |
| Stack | -2.10 | External closing pair is C 1368-G 1846 |
| Helix | -10.40 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1369-T 1845 29 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.30 | External closing pair is G 398-C 1334 |
| Stack | -2.20 | External closing pair is G 399-C 1333 |
| Stack | -1.30 | External closing pair is T 400-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 3.90 | External closing pair is A 401-T 1331 |
| Stack | -1.30 | External closing pair is T 407-A 1325 |
| Stack | -0.90 | External closing pair is A 408-T 1324 |
| Stack | -0.60 | External closing pair is A 409-T 1323 |
| Stack | -1.40 | External closing pair is G 410-T 1322 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 2.60 | External closing pair is T 411-A 1321 |
| Stack | -2.10 | External closing pair is A 414-T 1317 |
| Stack | -2.40 | External closing pair is G 415-C 1316 |
| Stack | -2.10 | External closing pair is A 416-T 1315 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 417-C 1314 |
| Stack | -2.10 | External closing pair is C 419-G 1312 |
| Stack | -0.90 | External closing pair is A 420-T 1311 |
| Stack | -0.90 | External closing pair is A 421-T 1310 |
| Stack | -0.60 | External closing pair is A 422-T 1309 |
| Helix | -4.50 | 5 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 423-T 1308 |
| Stack | -1.10 | External closing pair is A 424-T 1306 |
| Stack | -1.30 | External closing pair is T 425-A 1305 |
| Stack | -2.20 | External closing pair is A 426-T 1304 |
| Stack | -3.30 | External closing pair is C 427-G 1303 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is C 428-G 1302 |
| Stack | -2.10 | External closing pair is T 432-A 1300 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 3.00 | External closing pair is G 433-C 1299 |
| Stack | -1.30 | External closing pair is T 437-A 1296 |
| Stack | -2.10 | External closing pair is A 438-T 1295 |
| Stack | -2.20 | External closing pair is G 439-C 1294 |
| Stack | -1.00 | External closing pair is T 440-A 1293 |
| Stack | -1.40 | External closing pair is G 441-T 1292 |
| Helix | -8.00 | 6 base pairs. |
| Multi-loop | 4.20 | External closing pair is T 442-A 1291 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1277-T 1287 |
| Stack | -2.50 | External closing pair is G 1278-C 1286 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 1279-G 1285 |
| Stack | -2.10 | External closing pair is T 444-A 1270 |
| Stack | -2.40 | External closing pair is G 445-C 1269 |
| Stack | -0.90 | External closing pair is A 446-T 1268 |
| Stack | -0.90 | External closing pair is A 447-T 1267 |
| Stack | -0.90 | External closing pair is A 448-T 1266 |
| Stack | -2.20 | External closing pair is A 449-T 1265 |
| Stack | -1.40 | External closing pair is C 450-G 1264 |
| Helix | -10.80 | 8 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 451-T 1263 15 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1063-A 1252 |
| Stack | -2.10 | External closing pair is C 1064-G 1251 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1065-T 1250 |
| Stack | -2.40 | External closing pair is G 1068-C 1249 |
| Stack | -0.90 | External closing pair is A 1069-T 1248 |
| Stack | -2.10 | External closing pair is A 1070-T 1247 |
| Stack | -3.40 | External closing pair is G 1071-C 1246 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is C 1072-G 1245 |
| Stack | -2.10 | External closing pair is G 1074-T 1241 |
| Stack | -2.40 | External closing pair is G 1075-C 1240 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is A 1076-T 1239 |
| Stack | -1.30 | External closing pair is T 1080-A 1234 |
| Stack | -0.90 | External closing pair is A 1081-T 1233 |
| Stack | -2.20 | External closing pair is A 1082-T 1232 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 1083-G 1231 7 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1173-A 1227 |
| Stack | -3.40 | External closing pair is G 1174-C 1226 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.60 | External closing pair is C 1175-G 1225 |
| Stack | -2.10 | External closing pair is C 1176-G 1220 |
| Stack | -1.50 | External closing pair is T 1177-G 1219 |
| Stack | -2.10 | External closing pair is C 1178-G 1218 |
| Stack | -2.10 | External closing pair is A 1179-T 1217 |
| Stack | -2.40 | External closing pair is G 1180-C 1216 |
| Stack | -0.90 | External closing pair is A 1181-T 1215 |
| Helix | -11.10 | 7 base pairs. |
| Bulge loop | 4.90 | External closing pair is A 1182-T 1214 |
| Stack | -3.30 | External closing pair is C 1183-G 1207 |
| Stack | -2.10 | External closing pair is C 1184-G 1206 |
| Stack | -2.20 | External closing pair is A 1185-T 1205 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 1186-G 1204 |
| Stack | -2.40 | External closing pair is T 1085-A 1169 |
| Stack | -2.10 | External closing pair is C 1086-G 1168 |
| Stack | -1.10 | External closing pair is A 1087-T 1167 |
| Stack | -1.30 | External closing pair is T 1088-A 1166 |
| Stack | -1.50 | External closing pair is T 1089-G 1165 |
| Helix | -8.40 | 6 base pairs. |
| Multi-loop | -0.60 | External closing pair is C 1090-G 1164 25 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 1132-C 1148 |
| Stack | -0.60 | External closing pair is T 1133-G 1147 |
| Stack | -2.10 | External closing pair is T 1134-A 1146 |
| Stack | -2.20 | External closing pair is G 1135-C 1145 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 5.90 | Closing pair is T 1136-A 1144 |
| Stack | -3.30 | External closing pair is C 1100-G 1130 |
| Stack | -2.40 | External closing pair is C 1101-G 1129 |
| Stack | -2.20 | External closing pair is G 1102-C 1128 |
| Stack | -2.40 | External closing pair is T 1103-A 1127 |
| Helix | -10.30 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1104-G 1126 |
| Stack | -2.40 | External closing pair is T 1106-A 1124 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 0.90 | External closing pair is C 1107-G 1123 |
| Stack | -2.10 | External closing pair is C 1111-G 1119 |
| Stack | -0.60 | External closing pair is A 1112-T 1118 |
| Helix | -2.70 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 1113-T 1117 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 31
seq.txt
ΔG = -809.30
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.40 | 5 ss bases & 2 closing helices. |
| Stack | -0.90 | External closing pair is A 1837-T 3134 |
| Stack | -1.10 | External closing pair is A 1838-T 3133 |
| Stack | -1.30 | External closing pair is T 1839-A 3132 |
| Stack | -0.90 | External closing pair is A 1840-T 3131 |
| Stack | -1.10 | External closing pair is A 1841-T 3130 |
| Helix | -5.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1842-A 3129 |
| Stack | -2.10 | External closing pair is C 1844-G 3127 |
| Stack | -2.10 | External closing pair is T 1845-A 3126 |
| Stack | -2.40 | External closing pair is G 1846-C 3125 |
| Stack | -2.10 | External closing pair is A 1847-T 3124 |
| Stack | -3.30 | External closing pair is G 1848-C 3123 |
| Stack | -2.20 | External closing pair is G 1849-C 3122 |
| Stack | -0.90 | External closing pair is T 1850-A 3121 |
| Stack | -0.90 | External closing pair is T 1851-A 3120 |
| Helix | -16.00 | 9 base pairs. |
| Multi-loop | 4.60 | External closing pair is T 1852-A 3119 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1857-A 2665 |
| Stack | -2.10 | External closing pair is C 1858-G 2664 |
| Stack | -0.90 | External closing pair is T 1859-A 2663 |
| Stack | -2.10 | External closing pair is T 1860-A 2662 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is G 1861-C 2661 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.50 | External closing pair is G 1864-C 1943 |
| Stack | -1.50 | External closing pair is T 1865-G 1942 |
| Helix | -4.00 | 3 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 1866-G 1941 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1939 |
| Stack | -2.40 | External closing pair is T 1888-A 1938 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1889-G 1937 |
| Stack | -2.10 | External closing pair is C 1890-G 1935 |
| Stack | -0.60 | External closing pair is T 1891-G 1934 |
| Stack | -1.30 | External closing pair is T 1892-A 1933 |
| Stack | -0.60 | External closing pair is A 1893-T 1932 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 0.50 | External closing pair is G 1894-T 1931 |
| Stack | -0.90 | External closing pair is A 1897-T 1928 |
| Stack | -0.90 | External closing pair is A 1898-T 1927 |
| Stack | -0.90 | External closing pair is A 1899-T 1926 |
| Helix | -2.70 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 1900-T 1925 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -1.10 | External closing pair is A 1-T 1835 |
| Stack | -2.10 | External closing pair is T 2-A 1834 |
| Helix | -3.20 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3-C 1833 |
| Stack | -2.40 | External closing pair is T 4-A 1831 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 5-G 1830 19 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 418-G 1813 |
| Stack | -2.10 | External closing pair is C 419-G 1812 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 420-T 1811 |
| Stack | -0.90 | External closing pair is A 421-T 1809 |
| Stack | -2.10 | External closing pair is A 422-T 1808 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is G 423-C 1807 |
| Stack | -3.30 | External closing pair is C 427-G 1804 |
| Stack | -2.10 | External closing pair is C 428-G 1803 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 429-T 1802 |
| Stack | -2.10 | External closing pair is C 431-G 1801 |
| Stack | -1.00 | External closing pair is T 432-A 1800 |
| Stack | -1.30 | External closing pair is G 433-T 1799 |
| Stack | -0.90 | External closing pair is A 434-T 1798 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 3.60 | External closing pair is A 435-T 1797 9 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1117-A 1795 |
| Stack | -1.40 | External closing pair is T 1118-G 1794 |
| Stack | -1.50 | External closing pair is G 1119-C 1793 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1120-T 1792 |
| Stack | -0.60 | External closing pair is A 1122-T 1790 |
| Stack | -1.30 | External closing pair is G 1123-T 1789 |
| Stack | -2.10 | External closing pair is A 1124-T 1788 |
| Stack | -3.30 | External closing pair is G 1125-C 1787 |
| Stack | -2.40 | External closing pair is G 1126-C 1786 |
| Stack | -2.20 | External closing pair is A 1127-T 1785 |
| Stack | -2.40 | External closing pair is C 1128-G 1784 |
| Stack | -3.30 | External closing pair is G 1129-C 1783 |
| Stack | -2.40 | External closing pair is G 1130-C 1782 |
| Helix | -20.00 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 1131-T 1781 4 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1206-C 1778 |
| Stack | -3.40 | External closing pair is G 1207-C 1777 |
| Stack | -2.10 | External closing pair is C 1208-G 1776 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is T 1209-A 1775 |
| Stack | -1.30 | External closing pair is T 1214-A 1772 |
| Stack | -1.50 | External closing pair is T 1215-G 1771 |
| Stack | -2.10 | External closing pair is C 1216-G 1770 |
| Stack | -2.10 | External closing pair is T 1217-A 1769 |
| Stack | -3.30 | External closing pair is G 1218-C 1768 |
| Stack | -3.30 | External closing pair is G 1219-C 1767 |
| Stack | -2.40 | External closing pair is G 1220-C 1766 |
| Stack | -0.90 | External closing pair is A 1221-T 1765 |
| Helix | -16.90 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 1222-T 1764 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1762 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1752-G 1761 |
| Stack | -3.40 | External closing pair is G 1225-C 1749 |
| Stack | -2.10 | External closing pair is C 1226-G 1748 |
| Stack | -1.10 | External closing pair is A 1227-T 1747 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is T 1228-A 1746 |
| Stack | -2.20 | External closing pair is G 1231-C 1743 |
| Stack | -0.90 | External closing pair is T 1232-A 1742 |
| Stack | -1.30 | External closing pair is T 1233-A 1741 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.50 | External closing pair is A 1234-T 1740 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.40 | External closing pair is G 1238-T 1713 |
| Stack | -2.40 | External closing pair is T 1239-A 1712 |
| Stack | -2.10 | External closing pair is C 1240-G 1711 |
| Stack | -0.90 | External closing pair is T 1241-A 1710 |
| Stack | -0.90 | External closing pair is T 1242-A 1709 |
| Stack | -1.30 | External closing pair is T 1243-A 1708 |
| Stack | -1.40 | External closing pair is T 1244-G 1707 |
| Stack | -3.40 | External closing pair is G 1245-C 1706 |
| Helix | -13.80 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 1246-G 1705 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1292-G 1701 |
| Stack | -2.20 | External closing pair is A 1293-T 1700 |
| Stack | -2.10 | External closing pair is C 1294-G 1699 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.80 | External closing pair is T 1295-A 1698 18 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.40 | External closing pair is T 1248-A 1274 |
| Stack | -2.10 | External closing pair is C 1249-G 1273 |
| Stack | -2.10 | External closing pair is T 1250-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1251-C 1271 |
| Stack | -0.90 | External closing pair is A 1255-T 1266 |
| Stack | -2.20 | External closing pair is A 1256-T 1265 |
| Helix | -3.10 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1257-G 1264 |
| Stack | -2.20 | External closing pair is G 1132-C 1203 |
| Stack | -0.90 | External closing pair is T 1133-A 1202 |
| Stack | -1.00 | External closing pair is T 1134-A 1201 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1135-T 1200 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1147-C 1175 |
| Stack | -2.10 | External closing pair is C 1148-G 1174 |
| Stack | -2.10 | External closing pair is A 1149-T 1173 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1150-C 1172 |
| Stack | -1.30 | External closing pair is T 1154-A 1169 |
| Stack | -1.00 | External closing pair is T 1155-G 1168 |
| Stack | -1.10 | External closing pair is A 1156-T 1167 |
| Helix | -3.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1157-A 1166 |
| Stack | -2.10 | External closing pair is T 440-A 1112 |
| Stack | -2.20 | External closing pair is G 441-C 1111 |
| Stack | -2.40 | External closing pair is T 442-A 1110 |
| Stack | -2.10 | External closing pair is C 443-G 1109 |
| Stack | -2.10 | External closing pair is T 444-A 1108 |
| Stack | -2.40 | External closing pair is G 445-C 1107 |
| Helix | -13.30 | 7 base pairs. |
| Interior loop | 2.30 | External closing pair is A 446-T 1106 |
| Stack | -2.20 | External closing pair is A 449-T 1103 |
| Stack | -2.40 | External closing pair is C 450-G 1102 |
| Stack | -3.30 | External closing pair is G 451-C 1101 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 452-C 1100 9 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.10 | External closing pair is C 7-G 415 |
| Stack | -0.90 | External closing pair is T 8-A 414 |
| Stack | -2.40 | External closing pair is T 9-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 10-G 412 |
| Stack | -2.10 | External closing pair is C 12-G 410 |
| Stack | -0.90 | External closing pair is T 13-A 409 |
| Stack | -1.30 | External closing pair is T 14-A 408 |
| Stack | -0.90 | External closing pair is A 15-T 407 |
| Helix | -5.20 | 5 base pairs. |
| Interior loop | 5.60 | External closing pair is A 16-T 406 |
| Stack | -2.10 | External closing pair is A 24-T 403 |
| Stack | -2.20 | External closing pair is G 25-C 402 |
| Stack | -1.30 | External closing pair is T 26-A 401 |
| Stack | -2.20 | External closing pair is A 27-T 400 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.30 | External closing pair is C 28-G 399 |
| Stack | -0.60 | External closing pair is T 31-G 398 |
| Stack | -2.10 | External closing pair is T 32-A 397 |
| Stack | -3.30 | External closing pair is G 33-C 396 |
| Stack | -2.20 | External closing pair is G 34-C 395 |
| Stack | -1.30 | External closing pair is T 35-A 394 |
| Helix | -9.50 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 36-T 393 39 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 83-T 374 |
| Stack | -2.40 | External closing pair is C 84-G 373 |
| Stack | -2.20 | External closing pair is G 85-C 372 |
| Stack | -2.40 | External closing pair is T 86-A 371 |
| Stack | -2.10 | External closing pair is C 87-G 370 |
| Stack | -1.10 | External closing pair is A 88-T 369 |
| Stack | -1.30 | External closing pair is T 89-A 368 |
| Helix | -13.70 | 8 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 90-G 367 8 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 201-C 359 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is G 202-C 358 |
| Stack | -1.30 | External closing pair is G 205-T 355 |
| Stack | -2.10 | External closing pair is A 206-T 354 |
| Stack | -2.20 | External closing pair is G 207-C 353 |
| Stack | -1.30 | External closing pair is T 208-A 352 |
| Stack | -1.40 | External closing pair is T 209-G 351 |
| Stack | -2.20 | External closing pair is G 210-C 350 |
| Stack | -0.90 | External closing pair is T 211-A 349 |
| Helix | -11.40 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 212-A 348 |
| Stack | -2.40 | External closing pair is G 214-C 347 |
| Stack | -0.90 | External closing pair is A 215-T 346 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is A 216-T 345 35 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 298-G 340 |
| Stack | -2.10 | External closing pair is C 299-G 339 |
| Stack | -0.90 | External closing pair is T 300-A 338 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.10 | External closing pair is T 301-A 337 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -3.30 | External closing pair is G 236-C 285 |
| Stack | -2.50 | External closing pair is G 237-C 284 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 3.70 | External closing pair is T 238-G 283 11 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 269-C 281 |
| Stack | -2.10 | External closing pair is C 270-G 280 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 271-A 279 |
| Hairpin loop | 3.90 | Closing pair is C 272-G 277 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.50 | External closing pair is G 91-C 199 |
| Stack | -0.60 | External closing pair is T 92-G 198 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.90 | External closing pair is T 93-A 197 |
| Stack | -2.10 | External closing pair is T 96-A 193 |
| Stack | -3.40 | External closing pair is G 97-C 192 |
| Stack | -2.10 | External closing pair is C 98-G 191 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 99-A 190 15 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 32
seq.txt
ΔG = -809.10
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 211-A 1912 61 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1844-G 1894 |
| Stack | -1.00 | External closing pair is T 1845-A 1893 |
| Stack | -1.30 | External closing pair is G 1846-T 1892 |
| Stack | -2.10 | External closing pair is A 1847-T 1891 |
| Stack | -3.30 | External closing pair is G 1848-C 1890 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 1.20 | External closing pair is G 1849-C 1889 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is C 1853-G 1864 |
| Stack | -2.40 | External closing pair is G 1854-C 1863 |
| Helix | -4.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 1855-T 1862 |
| Stack | -2.10 | External closing pair is C 228-G 1815 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 229-A 1814 |
| Stack | -2.10 | External closing pair is C 231-G 1813 |
| Stack | -1.00 | External closing pair is T 232-G 1812 |
| Stack | -1.10 | External closing pair is A 233-T 1811 |
| Stack | -1.30 | External closing pair is T 234-A 1810 |
| Stack | -0.60 | External closing pair is A 235-T 1809 |
| Stack | -2.10 | External closing pair is G 236-T 1808 |
| Stack | -2.20 | External closing pair is G 237-C 1807 |
| Helix | -10.40 | 8 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 238-A 1806 |
| Stack | -2.40 | External closing pair is T 240-A 1805 |
| Stack | -3.30 | External closing pair is C 241-G 1804 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.70 | External closing pair is C 242-G 1803 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1116-A 1796 |
| Stack | -1.30 | External closing pair is T 1117-A 1795 |
| Stack | -1.40 | External closing pair is T 1118-G 1794 |
| Stack | -1.50 | External closing pair is G 1119-C 1793 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1120-T 1792 |
| Stack | -0.60 | External closing pair is A 1122-T 1790 |
| Stack | -1.30 | External closing pair is G 1123-T 1789 |
| Stack | -2.10 | External closing pair is A 1124-T 1788 |
| Stack | -3.30 | External closing pair is G 1125-C 1787 |
| Stack | -2.40 | External closing pair is G 1126-C 1786 |
| Stack | -2.20 | External closing pair is A 1127-T 1785 |
| Stack | -2.40 | External closing pair is C 1128-G 1784 |
| Stack | -3.30 | External closing pair is G 1129-C 1783 |
| Stack | -2.40 | External closing pair is G 1130-C 1782 |
| Helix | -20.00 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 1131-T 1781 4 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1206-C 1778 |
| Stack | -3.40 | External closing pair is G 1207-C 1777 |
| Stack | -2.10 | External closing pair is C 1208-G 1776 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is T 1209-A 1775 |
| Stack | -1.30 | External closing pair is T 1214-A 1772 |
| Stack | -1.50 | External closing pair is T 1215-G 1771 |
| Stack | -2.10 | External closing pair is C 1216-G 1770 |
| Stack | -2.10 | External closing pair is T 1217-A 1769 |
| Stack | -3.30 | External closing pair is G 1218-C 1768 |
| Stack | -3.30 | External closing pair is G 1219-C 1767 |
| Stack | -2.40 | External closing pair is G 1220-C 1766 |
| Stack | -0.90 | External closing pair is A 1221-T 1765 |
| Helix | -16.90 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 1222-T 1764 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1762 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1752-G 1761 |
| Stack | -3.40 | External closing pair is G 1225-C 1749 |
| Stack | -2.10 | External closing pair is C 1226-G 1748 |
| Stack | -1.10 | External closing pair is A 1227-T 1747 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is T 1228-A 1746 |
| Stack | -2.20 | External closing pair is G 1231-C 1743 |
| Stack | -0.90 | External closing pair is T 1232-A 1742 |
| Stack | -1.30 | External closing pair is T 1233-A 1741 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.50 | External closing pair is A 1234-T 1740 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.40 | External closing pair is G 1238-T 1713 |
| Stack | -2.40 | External closing pair is T 1239-A 1712 |
| Stack | -2.10 | External closing pair is C 1240-G 1711 |
| Stack | -0.90 | External closing pair is T 1241-A 1710 |
| Stack | -0.90 | External closing pair is T 1242-A 1709 |
| Stack | -1.30 | External closing pair is T 1243-A 1708 |
| Stack | -1.40 | External closing pair is T 1244-G 1707 |
| Stack | -3.40 | External closing pair is G 1245-C 1706 |
| Helix | -13.80 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 1246-G 1705 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1292-G 1701 |
| Stack | -2.20 | External closing pair is A 1293-T 1700 |
| Stack | -2.10 | External closing pair is C 1294-G 1699 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.80 | External closing pair is T 1295-A 1698 18 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.40 | External closing pair is T 1248-A 1274 |
| Stack | -2.10 | External closing pair is C 1249-G 1273 |
| Stack | -2.10 | External closing pair is T 1250-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1251-C 1271 |
| Stack | -0.90 | External closing pair is A 1255-T 1266 |
| Stack | -2.20 | External closing pair is A 1256-T 1265 |
| Helix | -3.10 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1257-G 1264 |
| Stack | -2.20 | External closing pair is G 1132-C 1203 |
| Stack | -0.90 | External closing pair is T 1133-A 1202 |
| Stack | -1.00 | External closing pair is T 1134-A 1201 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1135-T 1200 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1147-C 1175 |
| Stack | -2.10 | External closing pair is C 1148-G 1174 |
| Stack | -2.10 | External closing pair is A 1149-T 1173 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1150-C 1172 |
| Stack | -1.30 | External closing pair is T 1154-A 1169 |
| Stack | -1.00 | External closing pair is T 1155-G 1168 |
| Stack | -1.10 | External closing pair is A 1156-T 1167 |
| Helix | -3.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1157-A 1166 |
| Stack | -2.10 | External closing pair is T 245-A 1112 |
| Stack | -2.20 | External closing pair is G 246-C 1111 |
| Stack | -2.40 | External closing pair is T 247-A 1110 |
| Stack | -2.10 | External closing pair is C 248-G 1109 |
| Stack | -2.10 | External closing pair is T 249-A 1108 |
| Stack | -2.40 | External closing pair is G 250-C 1107 |
| Stack | -1.10 | External closing pair is A 251-T 1106 |
| Helix | -14.40 | 8 base pairs. |
| Interior loop | 3.70 | External closing pair is T 252-A 1105 |
| Stack | -1.40 | External closing pair is A 255-T 1103 |
| Stack | -1.40 | External closing pair is T 256-G 1102 |
| Stack | -3.30 | External closing pair is G 257-C 1101 |
| Helix | -6.10 | 4 base pairs. |
| Multi-loop | 1.00 | External closing pair is G 258-C 1100 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1085-A 1095 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1086-G 1094 |
| Stack | -2.20 | External closing pair is G 261-C 1083 |
| Stack | -0.90 | External closing pair is T 262-A 1082 |
| Stack | -1.30 | External closing pair is T 263-A 1081 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 4.70 | External closing pair is A 264-T 1080 |
| Stack | -1.50 | External closing pair is T 266-G 1075 |
| Stack | -2.10 | External closing pair is C 267-G 1074 |
| Stack | -2.10 | External closing pair is A 268-T 1073 |
| Stack | -3.40 | External closing pair is G 269-C 1072 |
| Stack | -2.10 | External closing pair is C 270-G 1071 |
| Helix | -11.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 271-A 1070 |
| Stack | -1.00 | External closing pair is T 273-G 1068 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is A 274-T 1067 |
| Stack | -2.40 | External closing pair is G 277-C 1064 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 278-T 1063 9 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is G 456-T 1061 |
| Stack | -0.90 | External closing pair is A 457-T 1060 |
| Stack | -0.90 | External closing pair is A 458-T 1059 |
| Stack | -1.10 | External closing pair is A 459-T 1058 |
| Stack | -2.10 | External closing pair is T 460-A 1057 |
| Stack | -3.30 | External closing pair is G 461-C 1056 |
| Helix | -9.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 462-C 1055 |
| Stack | -2.10 | External closing pair is A 463-T 1053 |
| Stack | -2.40 | External closing pair is G 464-C 1052 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 465-T 1051 |
| Stack | -1.00 | External closing pair is T 467-A 1049 |
| Stack | -1.30 | External closing pair is G 468-T 1048 |
| Stack | -0.60 | External closing pair is A 469-T 1047 |
| Stack | -1.30 | External closing pair is G 470-T 1046 |
| Stack | -0.90 | External closing pair is A 471-T 1045 |
| Helix | -5.10 | 6 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 472-T 1044 |
| Stack | -2.20 | External closing pair is A 473-T 1036 |
| Stack | -2.10 | External closing pair is C 474-G 1035 |
| Stack | -0.90 | External closing pair is A 475-T 1034 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 476-T 1033 |
| Stack | -2.10 | External closing pair is A 478-T 1031 |
| Stack | -3.40 | External closing pair is G 479-C 1030 |
| Stack | -2.10 | External closing pair is C 480-G 1029 |
| Stack | -0.90 | External closing pair is A 481-T 1028 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 482-T 1027 |
| Stack | -1.30 | External closing pair is T 484-A 1025 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 5.00 | External closing pair is T 485-G 1024 |
| Stack | -0.50 | External closing pair is G 492-T 1021 |
| Stack | -1.30 | External closing pair is G 493-T 1020 |
| Stack | -2.20 | External closing pair is A 494-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is C 495-G 1018 |
| Stack | -3.40 | External closing pair is G 498-C 1015 |
| Stack | -2.10 | External closing pair is C 499-G 1014 |
| Stack | -1.10 | External closing pair is A 500-T 1013 |
| Stack | -1.30 | External closing pair is T 501-A 1012 |
| Stack | -0.90 | External closing pair is A 502-T 1011 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 503-T 1010 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 536-T 1003 |
| Stack | -2.10 | External closing pair is C 537-G 1002 |
| Stack | -0.90 | External closing pair is A 538-T 1001 |
| Stack | -0.90 | External closing pair is A 539-T 1000 |
| Stack | -0.90 | External closing pair is A 540-T 999 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 4.10 | External closing pair is A 541-T 998 |
| Stack | -2.50 | External closing pair is G 545-T 996 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 995 |
| Stack | -2.40 | External closing pair is G 547-C 993 |
| Stack | -0.90 | External closing pair is A 548-T 992 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is A 549-T 991 |
| Stack | -0.90 | External closing pair is T 551-A 989 |
| Stack | -2.10 | External closing pair is T 552-A 988 |
| Stack | -2.40 | External closing pair is G 553-C 987 |
| Stack | -1.40 | External closing pair is A 554-T 986 |
| Stack | -1.50 | External closing pair is T 555-G 985 |
| Stack | -2.10 | External closing pair is C 556-G 984 |
| Stack | -0.60 | External closing pair is A 557-T 983 |
| Stack | -1.40 | External closing pair is G 558-T 982 |
| Stack | -1.30 | External closing pair is T 559-A 981 |
| Stack | -1.50 | External closing pair is T 560-G 980 |
| Stack | -2.40 | External closing pair is C 561-G 979 |
| Helix | -17.60 | 12 base pairs. |
| Interior loop | 3.90 | External closing pair is G 562-C 978 |
| Stack | -2.10 | External closing pair is T 566-A 971 |
| Stack | -2.20 | External closing pair is G 567-C 970 |
| Stack | -1.30 | External closing pair is T 568-A 969 |
| Stack | -0.60 | External closing pair is T 569-G 968 |
| Stack | -1.30 | External closing pair is T 570-A 967 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 571-T 966 |
| Stack | -2.10 | External closing pair is C 573-G 964 |
| Stack | -1.10 | External closing pair is A 574-T 963 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 575-A 962 |
| Stack | -1.30 | External closing pair is T 578-A 958 |
| Stack | -2.10 | External closing pair is A 579-T 957 |
| Stack | -3.40 | External closing pair is G 580-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 581-G 955 2 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -3.30 | External closing pair is C 284-G 452 |
| Stack | -2.40 | External closing pair is C 285-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 1.80 | External closing pair is G 286-C 450 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 33
seq.txt
ΔG = -808.70
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Interior loop | 3.30 | External closing pair is G 67-C 2934 |
| Stack | -2.40 | External closing pair is G 69-C 2929 |
| Stack | -2.10 | External closing pair is A 70-T 2928 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is G 71-C 2927 |
| Stack | -3.30 | External closing pair is C 76-G 2924 |
| Stack | -2.10 | External closing pair is C 77-G 2923 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 78-T 2922 |
| Stack | -2.20 | External closing pair is A 83-T 2918 |
| Stack | -2.40 | External closing pair is C 84-G 2917 |
| Stack | -2.50 | External closing pair is G 85-C 2916 |
| Stack | -1.50 | External closing pair is T 86-G 2915 |
| Helix | -8.60 | 5 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 87-G 2914 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 883-C 2913 |
| Stack | -2.10 | External closing pair is A 884-T 2912 |
| Stack | -1.50 | External closing pair is G 885-C 2911 |
| Helix | -6.00 | 4 base pairs. |
| Interior loop | 5.20 | External closing pair is G 886-T 2910 |
| Stack | -2.40 | External closing pair is T 894-A 2906 |
| Stack | -2.10 | External closing pair is C 895-G 2905 |
| Stack | -0.90 | External closing pair is A 896-T 2904 |
| Stack | -2.10 | External closing pair is A 897-T 2903 |
| Helix | -7.50 | 5 base pairs. |
| Interior loop | 1.20 | External closing pair is G 898-C 2902 |
| Stack | -3.30 | External closing pair is G 901-C 2898 |
| Stack | -2.50 | External closing pair is G 902-C 2897 |
| Stack | -1.40 | External closing pair is T 903-G 2896 |
| Stack | -3.40 | External closing pair is G 904-C 2895 |
| Stack | -3.30 | External closing pair is C 905-G 2894 |
| Stack | -2.10 | External closing pair is C 906-G 2893 |
| Helix | -16.00 | 7 base pairs. |
| Interior loop | 3.00 | External closing pair is T 907-G 2892 |
| Stack | -2.40 | External closing pair is T 914-A 2885 |
| Stack | -3.30 | External closing pair is C 915-G 2884 |
| Stack | -1.40 | External closing pair is C 916-G 2883 |
| Helix | -7.10 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is G 917-T 2882 |
| Stack | -1.30 | External closing pair is G 919-T 2880 |
| Stack | -2.20 | External closing pair is A 920-T 2879 |
| Helix | -3.50 | 3 base pairs. |
| Multi-loop | 1.40 | External closing pair is C 921-G 2878 6 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 2827-T 2874 |
| Stack | -1.50 | External closing pair is T 2828-G 2873 |
| Stack | -2.10 | External closing pair is C 2829-G 2872 |
| Stack | -1.50 | External closing pair is T 2830-G 2871 |
| Stack | -2.10 | External closing pair is C 2831-G 2870 |
| Stack | -1.40 | External closing pair is T 2832-G 2869 |
| Stack | -2.50 | External closing pair is G 2833-C 2868 |
| Stack | -0.50 | External closing pair is T 2834-G 2867 |
| Helix | -13.00 | 9 base pairs. |
| Interior loop | 3.60 | External closing pair is T 2835-G 2866 |
| Stack | -1.00 | External closing pair is T 2840-A 2860 |
| Stack | -2.50 | External closing pair is G 2841-T 2859 |
| Stack | -3.30 | External closing pair is C 2842-G 2858 |
| Stack | -2.10 | External closing pair is C 2843-G 2857 |
| Helix | -8.90 | 5 base pairs. |
| Interior loop | 1.00 | External closing pair is A 2844-T 2856 |
| Stack | -2.10 | External closing pair is C 2846-G 2854 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2847-A 2853 |
| Stack | -2.10 | External closing pair is C 924-G 2825 |
| Stack | -0.90 | External closing pair is T 925-A 2824 |
| Stack | -1.30 | External closing pair is T 926-A 2823 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is A 927-T 2822 |
| Stack | -1.30 | External closing pair is T 930-A 2819 |
| Stack | -1.00 | External closing pair is T 931-G 2818 |
| Stack | -1.40 | External closing pair is A 932-T 2817 |
| Helix | -3.70 | 4 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 933-G 2816 |
| Stack | -1.10 | External closing pair is A 934-T 2814 |
| Stack | -1.30 | External closing pair is T 935-A 2813 |
| Stack | -1.00 | External closing pair is T 936-G 2812 |
| Stack | -0.60 | External closing pair is A 937-T 2811 |
| Stack | -2.50 | External closing pair is G 938-T 2810 |
| Stack | -2.10 | External closing pair is C 939-G 2809 |
| Helix | -8.60 | 7 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 940-A 2808 |
| Stack | -3.30 | External closing pair is C 941-G 2806 |
| Stack | -2.10 | External closing pair is C 942-G 2805 |
| Stack | -0.90 | External closing pair is T 943-A 2804 |
| Stack | -2.40 | External closing pair is T 944-A 2803 |
| Stack | -2.10 | External closing pair is C 945-G 2802 |
| Stack | -1.10 | External closing pair is A 946-T 2801 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | -2.90 | External closing pair is T 947-A 2800 |
| Stack | -1.30 | External closing pair is G 950-T 2797 |
| Helix | -1.30 | 2 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 951-T 2796 |
| Stack | -1.00 | External closing pair is T 952-A 2793 |
| Stack | -1.40 | External closing pair is G 953-T 2792 |
| Stack | -1.00 | External closing pair is T 954-A 2791 |
| Stack | -2.50 | External closing pair is G 955-T 2790 |
| Helix | -5.90 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is C 956-G 2789 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 1019-G 2780 |
| Stack | -0.90 | External closing pair is T 1020-A 2779 |
| Stack | -0.90 | External closing pair is T 1021-A 2778 |
| Stack | -2.40 | External closing pair is T 1022-A 2777 |
| Stack | -2.40 | External closing pair is C 1023-G 2776 |
| Stack | -2.40 | External closing pair is G 1024-C 2775 |
| Stack | -2.20 | External closing pair is A 1025-T 2774 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 1026-G 2773 27 ss bases & 4 closing helices. |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -1.10 | External closing pair is A 958-T 1013 |
| Helix | -1.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 959-A 1012 |
| Stack | -1.10 | External closing pair is A 962-T 1009 |
| Stack | -2.10 | External closing pair is T 963-A 1008 |
| Helix | -3.20 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 964-C 1007 |
| Stack | -1.30 | External closing pair is T 966-A 1006 |
| Stack | -2.10 | External closing pair is A 967-T 1005 |
| Stack | -2.40 | External closing pair is G 968-C 1004 |
| Stack | -2.20 | External closing pair is A 969-T 1003 |
| Stack | -2.10 | External closing pair is C 970-G 1002 |
| Helix | -10.10 | 6 base pairs. |
| Interior loop | 3.10 | External closing pair is A 971-T 1001 |
| Stack | -1.40 | External closing pair is C 978-G 995 |
| Stack | -2.10 | External closing pair is G 979-T 994 |
| Stack | -2.40 | External closing pair is G 980-C 993 |
| Helix | -5.90 | 4 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 981-T 992 |
| Stack | -2.10 | External closing pair is T 90-A 874 |
| Stack | -2.20 | External closing pair is G 91-C 873 |
| Stack | -0.90 | External closing pair is T 92-A 872 |
| Stack | -2.10 | External closing pair is T 93-A 871 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 94-C 870 |
| Stack | -0.90 | External closing pair is T 95-A 868 |
| Stack | -1.00 | External closing pair is T 96-A 867 |
| Stack | -2.50 | External closing pair is G 97-T 866 |
| Stack | -2.10 | External closing pair is C 98-G 865 |
| Stack | -1.40 | External closing pair is T 99-G 864 |
| Stack | -2.20 | External closing pair is G 100-C 863 |
| Stack | -0.90 | External closing pair is T 101-A 862 |
| Helix | -11.00 | 8 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 102-A 861 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 116-G 811 7 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 162-C 805 |
| Stack | -1.30 | External closing pair is G 163-T 804 |
| Stack | -2.20 | External closing pair is A 164-T 803 |
| Stack | -2.10 | External closing pair is C 165-G 802 |
| Helix | -7.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 166-A 801 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 191-C 796 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 192-G 795 |
| Stack | -1.30 | External closing pair is T 194-A 793 |
| Stack | -0.90 | External closing pair is A 195-T 792 |
| Stack | -0.90 | External closing pair is A 196-T 791 |
| Stack | -2.10 | External closing pair is A 197-T 790 |
| Stack | -3.40 | External closing pair is G 198-C 789 |
| Stack | -3.30 | External closing pair is C 199-G 788 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 2.40 | External closing pair is C 200-G 787 |
| Stack | -1.30 | External closing pair is G 202-T 786 |
| Stack | -1.10 | External closing pair is A 203-T 785 |
| Stack | -1.00 | External closing pair is T 204-A 784 |
| Stack | -1.30 | External closing pair is G 205-T 783 |
| Helix | -4.70 | 5 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 206-T 782 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 227-T 779 |
| Stack | -2.10 | External closing pair is C 228-G 778 |
| Stack | -1.30 | External closing pair is T 229-A 777 |
| Stack | -2.20 | External closing pair is A 230-T 776 |
| Helix | -7.80 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is C 231-G 775 5 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 250-C 774 |
| Stack | -1.10 | External closing pair is A 251-T 773 |
| Stack | -1.30 | External closing pair is T 252-A 772 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 253-T 771 |
| Stack | -1.10 | External closing pair is A 255-T 769 |
| Stack | -2.10 | External closing pair is T 256-A 768 |
| Stack | -3.30 | External closing pair is G 257-C 767 |
| Helix | -6.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 258-C 766 |
| Stack | -2.10 | External closing pair is A 260-T 764 |
| Stack | -2.20 | External closing pair is G 261-C 763 |
| Stack | -1.30 | External closing pair is T 262-A 762 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is T 263-G 761 |
| Stack | -2.20 | External closing pair is A 264-T 755 |
| Stack | -2.10 | External closing pair is C 265-G 754 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 266-G 753 |
| Stack | -0.60 | External closing pair is A 268-T 751 |
| Stack | -2.50 | External closing pair is G 269-T 750 |
| Stack | -2.10 | External closing pair is C 270-G 749 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 271-A 748 |
| Stack | -1.30 | External closing pair is T 273-A 744 |
| Stack | -0.90 | External closing pair is A 274-T 743 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 275-T 742 |
| Stack | -2.40 | External closing pair is G 277-C 740 |
| Stack | -0.90 | External closing pair is A 278-T 739 |
| Stack | -2.10 | External closing pair is A 279-T 738 |
| Stack | -3.40 | External closing pair is G 280-C 737 |
| Stack | -3.30 | External closing pair is C 281-G 736 |
| Stack | -2.40 | External closing pair is C 282-G 735 |
| Helix | -14.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 283-C 734 23 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 345-A 728 |
| Stack | -2.40 | External closing pair is T 346-A 727 |
| Stack | -2.10 | External closing pair is C 347-G 726 |
| Stack | -0.90 | External closing pair is A 348-T 725 |
| Helix | -6.30 | 5 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 349-T 724 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 429-T 721 |
| Stack | -2.20 | External closing pair is A 430-T 720 |
| Stack | -2.10 | External closing pair is C 431-G 719 |
| Stack | -2.10 | External closing pair is T 432-A 718 |
| Helix | -7.30 | 5 base pairs. |
| Multi-loop | 2.00 | External closing pair is G 433-C 717 6 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 630-C 715 |
| Stack | -2.10 | External closing pair is A 631-T 714 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 632-C 713 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -1.40 | External closing pair is G 439-T 629 |
| Stack | -2.10 | External closing pair is T 440-A 628 |
| Stack | -2.20 | External closing pair is G 441-C 627 |
| Stack | -2.40 | External closing pair is T 442-A 626 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is C 443-G 625 |
| Stack | -0.90 | External closing pair is A 447-T 621 |
| Stack | -0.90 | External closing pair is A 448-T 620 |
| Stack | -2.20 | External closing pair is A 449-T 619 |
| Stack | -1.40 | External closing pair is C 450-G 618 |
| Stack | -2.10 | External closing pair is G 451-T 617 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 3.30 | External closing pair is G 452-C 616 |
| Stack | -0.90 | External closing pair is A 458-T 613 |
| Stack | -1.40 | External closing pair is A 459-T 612 |
| Stack | 0.30 | External closing pair is T 460-G 611 |
| Stack | -2.10 | External closing pair is G 461-T 610 |
| Stack | -2.40 | External closing pair is G 462-C 609 |
| Stack | -2.10 | External closing pair is A 463-T 608 |
| Stack | -2.40 | External closing pair is G 464-C 607 |
| Helix | -11.00 | 8 base pairs. |
| Interior loop | 4.10 | External closing pair is A 465-T 606 |
| Stack | -1.00 | External closing pair is T 467-A 602 |
| Stack | -1.30 | External closing pair is G 468-T 601 |
| Stack | -0.60 | External closing pair is A 469-T 600 |
| Stack | -1.30 | External closing pair is G 470-T 599 |
| Stack | -0.90 | External closing pair is A 471-T 598 |
| Stack | -0.90 | External closing pair is A 472-T 597 |
| Helix | -6.00 | 7 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 473-T 596 19 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 519-C 589 |
| Stack | -2.20 | External closing pair is G 520-C 588 |
| Stack | -1.00 | External closing pair is T 521-A 587 |
| Stack | -1.30 | External closing pair is G 522-T 586 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 523-T 585 |
| Stack | -2.10 | External closing pair is A 524-T 582 |
| Stack | -3.40 | External closing pair is G 525-C 581 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is C 526-G 580 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 486-A 517 |
| Stack | -1.10 | External closing pair is A 487-T 516 |
| Stack | -0.90 | External closing pair is T 488-A 515 |
| Stack | -0.90 | External closing pair is T 489-A 514 |
| Stack | -1.30 | External closing pair is T 490-A 513 |
| Stack | -1.40 | External closing pair is T 491-G 512 |
| Stack | -3.30 | External closing pair is G 492-C 511 |
| Helix | -10.20 | 8 base pairs. |
| Hairpin loop | 5.90 | Closing pair is G 493-C 510 |
| Stack | -2.10 | External closing pair is C 353-G 423 |
| Stack | -0.90 | External closing pair is T 354-A 422 |
| Stack | -0.90 | External closing pair is T 355-A 421 |
| Stack | -2.10 | External closing pair is T 356-A 420 |
| Helix | -6.00 | 5 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 357-C 419 |
| Bulge loop | 0.50 | External closing pair is C 358-G 417 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.30 | External closing pair is C 298-G 340 |
| Stack | -2.10 | External closing pair is C 299-G 339 |
| Stack | -0.90 | External closing pair is T 300-A 338 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.10 | External closing pair is T 301-A 337 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -1.40 | External closing pair is A 233-T 245 |
| Stack | -1.00 | External closing pair is T 234-G 244 |
| Stack | -2.10 | External closing pair is A 235-T 243 |
| Stack | -3.30 | External closing pair is G 236-C 242 |
| Helix | -7.80 | 5 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 237-C 241 |
| Stack | -2.10 | External closing pair is T 209-A 223 |
| Stack | -2.50 | External closing pair is G 210-C 222 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 3.20 | External closing pair is T 211-G 221 |
| Stack | -0.90 | External closing pair is T 212-A 219 |
| Helix | -0.90 | 2 base pairs. |
| Hairpin loop | 2.70 | Closing pair is T 213-A 218 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 34
seq.txt
ΔG = -808.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 361-G 2222 20 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is C 2109-G 2217 |
| Stack | -1.10 | External closing pair is A 2110-T 2216 |
| Stack | -1.30 | External closing pair is T 2111-A 2215 |
| Stack | -2.20 | External closing pair is A 2112-T 2214 |
| Stack | -3.30 | External closing pair is C 2113-G 2213 |
| Stack | -2.10 | External closing pair is C 2114-G 2212 |
| Helix | -12.10 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is A 2115-T 2211 21 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.40 | External closing pair is G 2140-T 2153 |
| Stack | -1.00 | External closing pair is T 2141-A 2152 |
| Stack | -2.10 | External closing pair is G 2142-T 2151 |
| Stack | -3.40 | External closing pair is G 2143-C 2150 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2144-G 2149 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -0.50 | External closing pair is T 365-G 2048 |
| Stack | -1.40 | External closing pair is T 366-G 2047 |
| Stack | -2.40 | External closing pair is G 367-C 2046 |
| Stack | -1.10 | External closing pair is A 368-T 2045 |
| Stack | -2.10 | External closing pair is T 369-A 2044 |
| Stack | -2.40 | External closing pair is G 370-C 2043 |
| Stack | -2.20 | External closing pair is A 371-T 2042 |
| Stack | -1.40 | External closing pair is C 372-G 2041 |
| Stack | -1.40 | External closing pair is G 373-T 2040 |
| Stack | -0.90 | External closing pair is T 374-A 2039 |
| Helix | -15.80 | 11 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 375-A 2038 |
| Stack | -0.90 | External closing pair is T 377-A 2037 |
| Stack | -1.30 | External closing pair is T 378-A 2036 |
| Stack | -1.00 | External closing pair is T 379-G 2035 |
| Stack | -2.20 | External closing pair is A 380-T 2034 |
| Stack | -2.10 | External closing pair is C 381-G 2033 |
| Stack | -2.10 | External closing pair is A 382-T 2032 |
| Stack | -2.50 | External closing pair is G 383-C 2031 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 384-G 2030 7 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 525-C 1990 |
| Stack | -2.10 | External closing pair is C 526-G 1989 |
| Stack | -0.90 | External closing pair is A 527-T 1988 |
| Stack | -1.10 | External closing pair is A 528-T 1987 |
| Stack | -0.90 | External closing pair is T 529-A 1986 |
| Stack | -0.90 | External closing pair is T 530-A 1985 |
| Stack | -0.90 | External closing pair is T 531-A 1984 |
| Helix | -10.20 | 8 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 532-A 1983 8 ss bases & 4 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1980 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1942-C 1979 |
| Stack | -2.20 | External closing pair is A 1944-T 1976 |
| Stack | -2.10 | External closing pair is C 1945-G 1975 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1946-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 611-T 1892 |
| Stack | -0.90 | External closing pair is T 612-A 1874 |
| Stack | -1.00 | External closing pair is T 613-A 1873 |
| Stack | -2.50 | External closing pair is G 614-T 1872 |
| Stack | -3.30 | External closing pair is C 615-G 1871 |
| Helix | -7.70 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 616-G 1870 |
| Stack | -2.20 | External closing pair is G 618-C 1869 |
| Stack | -0.90 | External closing pair is T 619-A 1868 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 4.00 | External closing pair is T 620-A 1867 |
| Stack | -1.40 | External closing pair is A 623-T 1865 |
| Stack | -1.40 | External closing pair is T 624-G 1864 |
| Stack | -2.40 | External closing pair is G 625-C 1863 |
| Stack | -2.20 | External closing pair is A 626-T 1862 |
| Stack | -2.10 | External closing pair is C 627-G 1861 |
| Helix | -9.50 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 628-T 1860 |
| Stack | -2.40 | External closing pair is G 630-C 1858 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 631-T 1857 |
| Stack | -1.50 | External closing pair is G 632-C 1853 |
| Stack | -1.30 | External closing pair is G 633-T 1852 |
| Stack | -0.90 | External closing pair is A 634-T 1851 |
| Helix | -3.70 | 4 base pairs. |
| Interior loop | 0.30 | External closing pair is A 635-T 1850 |
| Stack | -2.40 | External closing pair is T 638-A 1847 |
| Stack | -1.40 | External closing pair is C 639-G 1846 |
| Stack | -2.10 | External closing pair is G 640-T 1845 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 1844 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 666-A 1823 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 667-C 1822 |
| Stack | -2.40 | External closing pair is T 669-A 1820 |
| Stack | -2.10 | External closing pair is C 670-G 1819 |
| Stack | -0.90 | External closing pair is T 671-A 1818 |
| Stack | -0.90 | External closing pair is T 672-A 1817 |
| Stack | -2.40 | External closing pair is T 673-A 1816 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 674-G 1815 13 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -3.40 | External closing pair is G 682-C 1757 |
| Stack | -2.10 | External closing pair is C 683-G 1756 |
| Stack | -1.10 | External closing pair is A 684-T 1755 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 685-A 1754 |
| Stack | -2.50 | External closing pair is G 686-T 1751 |
| Stack | -2.40 | External closing pair is C 687-G 1750 |
| Stack | -3.40 | External closing pair is G 688-C 1749 |
| Stack | -2.10 | External closing pair is C 689-G 1748 |
| Stack | -1.10 | External closing pair is A 690-T 1747 |
| Helix | -11.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 691-A 1746 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.30 | External closing pair is T 692-A 1716 |
| Stack | -1.10 | External closing pair is A 693-T 1715 |
| Stack | -1.30 | External closing pair is T 694-A 1714 |
| Stack | -1.10 | External closing pair is A 695-T 1713 |
| Stack | -1.30 | External closing pair is T 696-A 1712 |
| Stack | -0.60 | External closing pair is T 697-G 1711 |
| Helix | -6.70 | 7 base pairs. |
| Interior loop | 1.70 | External closing pair is T 698-A 1710 |
| Stack | -2.40 | External closing pair is T 700-A 1708 |
| Stack | -2.40 | External closing pair is C 701-G 1707 |
| Stack | -3.40 | External closing pair is G 702-C 1706 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 703-G 1705 |
| Stack | -2.20 | External closing pair is G 705-C 1703 |
| Helix | -2.20 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 706-A 1702 |
| Stack | -2.10 | External closing pair is C 708-G 1701 |
| Stack | -2.20 | External closing pair is A 709-T 1700 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 710-G 1699 24 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1009-A 1691 |
| Stack | -0.60 | External closing pair is T 1010-G 1690 |
| Stack | -1.30 | External closing pair is T 1011-A 1689 |
| Helix | -3.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1012-T 1688 |
| Stack | -3.40 | External closing pair is G 1014-C 1686 |
| Stack | -2.10 | External closing pair is C 1015-G 1685 |
| Stack | -1.00 | External closing pair is T 1016-G 1684 |
| Stack | -2.10 | External closing pair is A 1017-T 1683 |
| Helix | -8.60 | 5 base pairs. |
| Multi-loop | 2.60 | External closing pair is G 1018-C 1682 22 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is C 1574-G 1675 |
| Stack | -2.10 | External closing pair is A 1575-T 1674 |
| Stack | -3.30 | External closing pair is G 1576-C 1673 |
| Helix | -7.50 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1577-C 1672 |
| Stack | -1.10 | External closing pair is A 1578-T 1670 |
| Stack | -1.30 | External closing pair is T 1579-A 1669 |
| Stack | -2.20 | External closing pair is A 1580-T 1668 |
| Helix | -4.60 | 4 base pairs. |
| Multi-loop | 1.30 | External closing pair is C 1581-G 1667 9 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1663 |
| Stack | -2.10 | External closing pair is A 1649-T 1662 |
| Stack | -2.20 | External closing pair is G 1650-C 1661 |
| Stack | -0.90 | External closing pair is T 1651-A 1660 |
| Stack | -0.90 | External closing pair is T 1652-A 1659 |
| Helix | -8.50 | 6 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1653-A 1658 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1583-A 1628 |
| Stack | -2.40 | External closing pair is G 1584-C 1627 |
| Stack | -0.90 | External closing pair is A 1585-T 1626 |
| Stack | -2.20 | External closing pair is A 1586-T 1625 |
| Helix | -7.60 | 5 base pairs. |
| Bulge loop | 5.90 | External closing pair is C 1587-G 1624 |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -0.90 | External closing pair is T 1511-A 1567 |
| Stack | -0.90 | External closing pair is T 1512-A 1566 |
| Stack | -0.90 | External closing pair is T 1513-A 1565 |
| Stack | -0.90 | External closing pair is T 1514-A 1564 |
| Stack | -2.10 | External closing pair is T 1515-A 1563 |
| Stack | -3.40 | External closing pair is G 1516-C 1562 |
| Stack | -2.10 | External closing pair is C 1517-G 1561 |
| Helix | -11.20 | 8 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 1518-T 1560 |
| Stack | -3.40 | External closing pair is G 1522-C 1559 |
| Stack | -2.10 | External closing pair is C 1523-G 1558 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1524-T 1557 |
| Stack | -1.30 | External closing pair is T 1526-A 1555 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -7.90 | 6 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -1.30 | External closing pair is G 1024-T 1505 |
| Stack | -2.20 | External closing pair is A 1025-T 1504 |
| Stack | -2.10 | External closing pair is C 1026-G 1503 |
| Stack | -0.90 | External closing pair is T 1027-A 1502 |
| Stack | -2.10 | External closing pair is T 1028-A 1501 |
| Stack | -3.40 | External closing pair is G 1029-C 1500 |
| Stack | -2.10 | External closing pair is C 1030-G 1499 |
| Helix | -14.10 | 8 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1031-A 1498 14 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -0.90 | External closing pair is A 1121-T 1455 |
| Stack | -2.10 | External closing pair is A 1122-T 1454 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1123-C 1453 |
| Stack | -2.10 | External closing pair is A 1124-T 1451 |
| Stack | -1.50 | External closing pair is G 1125-C 1450 |
| Stack | -1.30 | External closing pair is G 1126-T 1449 |
| Stack | -2.20 | External closing pair is A 1127-T 1448 |
| Stack | -1.40 | External closing pair is C 1128-G 1447 |
| Stack | -2.10 | External closing pair is G 1129-T 1446 |
| Stack | -2.40 | External closing pair is G 1130-C 1445 |
| Stack | -0.60 | External closing pair is A 1131-T 1444 |
| Stack | -1.40 | External closing pair is G 1132-T 1443 |
| Stack | -1.30 | External closing pair is T 1133-A 1442 |
| Helix | -16.30 | 11 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1134-G 1441 |
| Stack | -2.40 | External closing pair is T 1136-A 1439 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1137-G 1438 30 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -1.30 | External closing pair is T 1032-A 1114 |
| Stack | -0.60 | External closing pair is T 1033-G 1113 |
| Stack | -2.10 | External closing pair is T 1034-A 1112 |
| Stack | -2.20 | External closing pair is G 1035-C 1111 |
| Stack | -2.40 | External closing pair is T 1036-A 1110 |
| Stack | -2.10 | External closing pair is C 1037-G 1109 |
| Stack | -2.10 | External closing pair is T 1038-A 1108 |
| Helix | -12.80 | 8 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1039-C 1107 |
| Stack | -2.40 | External closing pair is T 1051-A 1095 |
| Stack | -2.10 | External closing pair is C 1052-G 1094 |
| Stack | -2.10 | External closing pair is T 1053-A 1093 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is G 1054-C 1092 |
| Stack | -2.10 | External closing pair is T 1067-A 1091 |
| Stack | -2.40 | External closing pair is G 1068-C 1090 |
| Stack | -0.90 | External closing pair is A 1069-T 1089 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 2.60 | External closing pair is A 1070-T 1088 |
| Stack | -2.10 | External closing pair is T 1073-A 1084 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 1074-C 1083 |
| Stack | -2.20 | External closing pair is A 716-T 996 |
| Stack | -2.10 | External closing pair is C 717-G 995 |
| Stack | -2.10 | External closing pair is A 718-T 994 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is G 719-C 993 |
| Stack | -1.10 | External closing pair is A 723-T 990 |
| Stack | -0.90 | External closing pair is T 724-A 989 |
| Stack | -2.10 | External closing pair is T 725-A 988 |
| Stack | -2.40 | External closing pair is G 726-C 987 |
| Helix | -6.50 | 5 base pairs. |
| Interior loop | 0.90 | External closing pair is A 727-T 986 |
| Stack | -0.90 | External closing pair is A 730-T 983 |
| Helix | -0.90 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 731-T 982 |
| Stack | -3.30 | External closing pair is C 733-G 980 |
| Stack | -2.40 | External closing pair is C 734-G 979 |
| Stack | -3.30 | External closing pair is G 735-C 978 |
| Helix | -9.00 | 4 base pairs. |
| Multi-loop | 3.60 | External closing pair is G 736-C 977 29 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 794-T 966 |
| Stack | -3.40 | External closing pair is G 795-C 965 |
| Stack | -2.10 | External closing pair is C 796-G 964 |
| Stack | -1.10 | External closing pair is A 797-T 963 |
| Stack | -1.30 | External closing pair is T 798-A 962 |
| Stack | -0.90 | External closing pair is A 799-T 961 |
| Stack | -0.90 | External closing pair is A 800-T 960 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 4.50 | External closing pair is A 801-T 959 22 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -1.30 | External closing pair is T 809-A 920 |
| Stack | -1.40 | External closing pair is T 810-G 919 |
| Stack | -3.40 | External closing pair is G 811-C 918 |
| Stack | -2.40 | External closing pair is C 812-G 917 |
| Stack | -3.30 | External closing pair is G 813-C 916 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is G 814-C 915 12 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -0.90 | External closing pair is T 817-A 857 |
| Stack | -2.40 | External closing pair is T 818-A 856 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 819-G 855 |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.10 | External closing pair is G 753-T 790 |
| Stack | -2.50 | External closing pair is G 754-C 789 |
| Stack | -1.50 | External closing pair is T 755-G 788 |
| Stack | -2.10 | External closing pair is C 756-G 787 |
| Helix | -8.20 | 5 base pairs. |
| Interior loop | 3.10 | External closing pair is A 757-T 786 |
| Stack | -2.20 | External closing pair is A 762-T 779 |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -7.80 | 5 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Interior loop | -0.40 | External closing pair is T 387-A 523 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 35
seq.txt
ΔG = -806.70
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 2.80 | External closing pair is G 46-C 3102 3 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is C 47-G 2664 |
| Stack | -0.90 | External closing pair is T 48-A 2663 |
| Stack | -2.10 | External closing pair is T 49-A 2662 |
| Helix | -5.10 | 4 base pairs. |
| Multi-loop | 4.10 | External closing pair is G 50-C 2661 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1021-A 2649 |
| Stack | -2.40 | External closing pair is T 1022-A 2648 |
| Stack | -1.40 | External closing pair is C 1023-G 2647 |
| Stack | -1.30 | External closing pair is G 1024-T 2646 |
| Stack | -2.20 | External closing pair is A 1025-T 2645 |
| Stack | -2.10 | External closing pair is C 1026-G 2644 |
| Helix | -10.30 | 7 base pairs. |
| Bulge loop | 6.20 | External closing pair is T 1027-A 2643 |
| Stack | -1.40 | External closing pair is T 1028-G 2629 |
| Stack | -3.40 | External closing pair is G 1029-C 2628 |
| Stack | -2.10 | External closing pair is C 1030-G 2627 |
| Stack | -1.30 | External closing pair is T 1031-A 2626 |
| Stack | -0.60 | External closing pair is T 1032-G 2625 |
| Stack | -0.90 | External closing pair is T 1033-A 2624 |
| Helix | -9.70 | 7 base pairs. |
| Interior loop | 1.90 | External closing pair is T 1034-A 2623 |
| Stack | -2.50 | External closing pair is G 1039-T 2618 |
| Helix | -2.50 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1040-G 2617 |
| Stack | -2.20 | External closing pair is A 1042-T 2616 |
| Stack | -2.10 | External closing pair is C 1043-G 2615 |
| Stack | -0.90 | External closing pair is T 1044-A 2614 |
| Stack | -0.90 | External closing pair is T 1045-A 2613 |
| Stack | -0.90 | External closing pair is T 1046-A 2612 |
| Stack | -0.90 | External closing pair is T 1047-A 2611 |
| Stack | -1.30 | External closing pair is T 1048-A 2610 |
| Stack | -1.40 | External closing pair is A 1049-T 2609 |
| Helix | -10.60 | 9 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1050-G 2608 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 2122-T 2601 |
| Stack | -3.30 | External closing pair is C 2123-G 2600 |
| Stack | -2.10 | External closing pair is C 2124-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2125-T 2598 |
| Stack | -3.30 | External closing pair is G 2127-C 2597 |
| Stack | -2.40 | External closing pair is G 2128-C 2596 |
| Stack | -0.90 | External closing pair is A 2129-T 2595 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 2130-T 2594 |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -3.40 | External closing pair is G 1054-C 2120 |
| Stack | -3.30 | External closing pair is C 1055-G 2119 |
| Stack | -2.10 | External closing pair is C 1056-G 2118 |
| Stack | -1.10 | External closing pair is A 1057-T 2117 |
| Stack | -0.90 | External closing pair is T 1058-A 2116 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1059-A 2115 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2069-C 2109 |
| Stack | -2.10 | External closing pair is T 2070-A 2108 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2071-C 2107 |
| Stack | -1.30 | External closing pair is T 2072-A 2105 |
| Stack | -0.90 | External closing pair is A 2073-T 2104 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 3.20 | External closing pair is A 2074-T 2103 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -0.60 | External closing pair is A 1070-T 2067 |
| Stack | -2.50 | External closing pair is G 1071-T 2066 |
| Stack | -2.10 | External closing pair is C 1072-G 2065 |
| Stack | -2.10 | External closing pair is T 1073-A 2064 |
| Stack | -3.30 | External closing pair is G 1074-C 2063 |
| Helix | -10.60 | 6 base pairs. |
| Multi-loop | 1.10 | External closing pair is G 1075-C 2062 14 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.20 | External closing pair is A 1082-T 2042 |
| Stack | -2.10 | External closing pair is C 1083-G 2041 |
| Stack | -1.10 | External closing pair is A 1084-T 2040 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is T 1085-A 2039 |
| Stack | -0.90 | External closing pair is T 1088-A 2037 |
| Stack | -2.40 | External closing pair is T 1089-A 2036 |
| Stack | -2.10 | External closing pair is C 1090-G 2035 |
| Stack | -2.20 | External closing pair is A 1091-T 2034 |
| Stack | -2.10 | External closing pair is C 1092-G 2033 |
| Stack | -2.10 | External closing pair is A 1093-T 2032 |
| Helix | -11.80 | 7 base pairs. |
| Multi-loop | 0.40 | External closing pair is G 1094-C 2031 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1115-G 2026 |
| Stack | -1.30 | External closing pair is T 1116-A 2025 |
| Helix | -3.40 | 3 base pairs. |
| Interior loop | -2.90 | External closing pair is T 1117-G 2024 |
| Stack | -1.30 | External closing pair is G 1120-T 2021 |
| Stack | -0.90 | External closing pair is A 1121-T 2020 |
| Stack | -0.60 | External closing pair is A 1122-T 2019 |
| Helix | -2.80 | 4 base pairs. |
| Multi-loop | 0.90 | External closing pair is G 1123-T 2018 9 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1921-C 2016 |
| Stack | -2.40 | External closing pair is C 1922-G 2015 |
| Stack | -1.50 | External closing pair is G 1923-C 2014 |
| Stack | -1.40 | External closing pair is G 1924-T 2013 |
| Stack | -1.30 | External closing pair is T 1925-A 2012 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1926-G 2011 |
| Stack | -1.30 | External closing pair is T 1928-A 2009 |
| Stack | -0.60 | External closing pair is A 1929-T 2008 |
| Stack | -1.40 | External closing pair is G 1930-T 2007 |
| Stack | -1.30 | External closing pair is T 1931-A 2006 |
| Stack | -1.00 | External closing pair is T 1932-G 2005 |
| Helix | -5.60 | 6 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1933-T 2004 |
| Stack | -2.40 | External closing pair is G 1937-C 1995 |
| Stack | -0.90 | External closing pair is A 1938-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1939-T 1993 |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1130-C 1918 |
| Stack | -2.10 | External closing pair is A 1131-T 1917 |
| Stack | -2.20 | External closing pair is G 1132-C 1916 |
| Stack | -0.90 | External closing pair is T 1133-A 1915 |
| Stack | -2.10 | External closing pair is T 1134-A 1914 |
| Stack | -2.20 | External closing pair is G 1135-C 1913 |
| Helix | -11.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is T 1136-A 1912 19 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -3.40 | External closing pair is G 1147-C 1879 |
| Stack | -2.10 | External closing pair is C 1148-G 1878 |
| Stack | -2.10 | External closing pair is A 1149-T 1877 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.40 | External closing pair is G 1150-C 1876 17 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is T 1862-G 1871 |
| Stack | -2.40 | External closing pair is C 1863-G 1870 |
| Helix | -3.90 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 1864-C 1869 |
| Stack | -0.60 | External closing pair is A 1163-T 1860 |
| Stack | -2.10 | External closing pair is G 1164-T 1859 |
| Stack | -2.40 | External closing pair is G 1165-C 1858 |
| Stack | -1.10 | External closing pair is A 1166-T 1857 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 1167-A 1856 |
| Stack | -2.50 | External closing pair is G 1174-T 1850 |
| Stack | -3.30 | External closing pair is C 1175-G 1849 |
| Stack | -2.10 | External closing pair is C 1176-G 1848 |
| Stack | -2.40 | External closing pair is T 1177-A 1847 |
| Stack | -2.10 | External closing pair is C 1178-G 1846 |
| Stack | -2.10 | External closing pair is A 1179-T 1845 |
| Helix | -14.50 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1180-C 1844 23 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is G 1196-C 1437 |
| Stack | -1.10 | External closing pair is A 1197-T 1436 |
| Stack | -2.40 | External closing pair is T 1198-A 1435 |
| Stack | -2.10 | External closing pair is C 1199-G 1434 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 0.10 | External closing pair is T 1200-A 1433 18 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1429 |
| Stack | -2.20 | External closing pair is G 1303-C 1428 |
| Stack | -1.30 | External closing pair is T 1304-A 1427 |
| Stack | -1.10 | External closing pair is A 1305-T 1426 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1306-A 1425 27 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -1.40 | External closing pair is G 1329-T 1365 |
| Stack | -0.90 | External closing pair is T 1330-A 1364 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1363 |
| Stack | -3.30 | External closing pair is C 1333-G 1361 |
| Stack | -2.10 | External closing pair is C 1334-G 1360 |
| Stack | -0.90 | External closing pair is A 1335-T 1359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1336-T 1358 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.20 | External closing pair is A 52-T 1019 |
| Stack | -2.10 | External closing pair is C 53-G 1018 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 54-A 1017 |
| Stack | -3.40 | External closing pair is G 55-C 1015 |
| Helix | -3.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 56-G 1014 |
| Stack | -1.30 | External closing pair is T 57-A 1012 |
| Stack | -0.60 | External closing pair is A 58-T 1011 |
| Stack | -0.50 | External closing pair is G 59-T 1010 |
| Stack | -1.40 | External closing pair is G 60-T 1009 |
| Helix | -3.80 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 61-A 1008 |
| Stack | -1.30 | External closing pair is T 63-A 1006 |
| Stack | -2.10 | External closing pair is A 64-T 1005 |
| Helix | -3.40 | 3 base pairs. |
| Bulge loop | 2.30 | External closing pair is G 65-C 1004 |
| Stack | -2.50 | External closing pair is G 67-T 1003 |
| Stack | -1.40 | External closing pair is C 68-G 1002 |
| Stack | -1.30 | External closing pair is G 69-T 1001 |
| Stack | -0.60 | External closing pair is A 70-T 1000 |
| Stack | -1.30 | External closing pair is G 71-T 999 |
| Stack | -1.10 | External closing pair is A 72-T 998 |
| Stack | -1.30 | External closing pair is T 73-A 997 |
| Stack | -2.20 | External closing pair is A 74-T 996 |
| Helix | -11.70 | 9 base pairs. |
| Bulge loop | 4.80 | External closing pair is C 75-G 995 |
| Stack | -3.30 | External closing pair is C 76-G 985 |
| Stack | -2.10 | External closing pair is C 77-G 984 |
| Stack | -0.90 | External closing pair is A 78-T 983 |
| Stack | -1.10 | External closing pair is A 79-T 982 |
| Stack | -2.40 | External closing pair is T 80-A 981 |
| Stack | -3.30 | External closing pair is C 81-G 980 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.00 | External closing pair is C 82-G 979 22 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is G 949-T 974 |
| Stack | -2.40 | External closing pair is G 950-C 973 |
| Stack | -1.10 | External closing pair is A 951-T 972 |
| Stack | -2.10 | External closing pair is T 952-A 971 |
| Stack | -2.20 | External closing pair is G 953-C 970 |
| Helix | -9.90 | 6 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 954-A 969 |
| Stack | -2.10 | External closing pair is C 956-G 968 |
| Stack | -1.30 | External closing pair is T 957-A 967 |
| Helix | -3.40 | 3 base pairs. |
| Hairpin loop | 5.60 | Closing pair is A 958-T 966 |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 90-A 874 |
| Stack | -2.20 | External closing pair is G 91-C 873 |
| Stack | -0.90 | External closing pair is T 92-A 872 |
| Stack | -2.10 | External closing pair is T 93-A 871 |
| Stack | -2.50 | External closing pair is G 94-C 870 |
| Stack | -0.60 | External closing pair is T 95-G 869 |
| Helix | -10.40 | 7 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 96-A 868 |
| Stack | -2.50 | External closing pair is G 97-T 866 |
| Stack | -2.10 | External closing pair is C 98-G 865 |
| Stack | -1.40 | External closing pair is T 99-G 864 |
| Stack | -2.20 | External closing pair is G 100-C 863 |
| Stack | -0.90 | External closing pair is T 101-A 862 |
| Helix | -9.10 | 6 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 102-A 861 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 116-G 811 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -3.40 | External closing pair is G 118-C 796 |
| Stack | -2.10 | External closing pair is C 119-G 795 |
| Stack | -0.90 | External closing pair is T 120-A 794 |
| Stack | -1.30 | External closing pair is T 121-A 793 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 122-T 792 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -2.40 | External closing pair is T 127-A 762 |
| Stack | -3.30 | External closing pair is C 128-G 761 |
| Stack | -1.40 | External closing pair is C 129-G 760 |
| Helix | -7.10 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is G 130-T 759 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
Structure 36
seq.txt
ΔG = -806.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.90 | External closing pair is T 177-G 2522 3 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.40 | External closing pair is T 178-A 2474 |
| Stack | -2.10 | External closing pair is C 179-G 2473 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is T 180-A 2472 9 ss bases & 4 closing helices. |
| Stack | -1.30 | External closing pair is T 2449-A 2469 |
| Stack | -2.20 | External closing pair is A 2450-T 2468 |
| Stack | -2.10 | External closing pair is C 2451-G 2467 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2452-G 2466 |
| Stack | -0.90 | External closing pair is T 2454-A 2464 |
| Stack | -0.90 | External closing pair is T 2455-A 2463 |
| Stack | -2.10 | External closing pair is T 2456-A 2462 |
| Helix | -3.90 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 2457-C 2461 |
| Stack | -1.40 | External closing pair is T 2429-G 2446 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -9.10 | 7 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.10 | External closing pair is C 182-G 2424 |
| Stack | -1.10 | External closing pair is A 183-T 2423 |
| Stack | -1.30 | External closing pair is T 184-A 2422 |
| Stack | -2.20 | External closing pair is A 185-T 2421 |
| Stack | -2.10 | External closing pair is C 186-G 2420 |
| Stack | -0.50 | External closing pair is T 187-G 2419 |
| Stack | -1.00 | External closing pair is T 188-G 2418 |
| Helix | -10.30 | 8 base pairs. |
| Interior loop | 3.20 | External closing pair is A 189-T 2417 |
| Stack | -3.40 | External closing pair is G 191-C 2414 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.90 | External closing pair is C 192-G 2413 |
| Stack | -2.50 | External closing pair is G 198-T 2409 |
| Stack | -3.30 | External closing pair is C 199-G 2408 |
| Stack | -2.40 | External closing pair is C 200-G 2407 |
| Stack | -3.30 | External closing pair is G 201-C 2406 |
| Helix | -11.50 | 5 base pairs. |
| Interior loop | 3.40 | External closing pair is G 202-C 2405 |
| Stack | -2.10 | External closing pair is A 206-T 2403 |
| Stack | -2.20 | External closing pair is G 207-C 2402 |
| Stack | -0.90 | External closing pair is T 208-A 2401 |
| Stack | -2.10 | External closing pair is T 209-A 2400 |
| Stack | -2.20 | External closing pair is G 210-C 2399 |
| Stack | -1.30 | External closing pair is T 211-A 2398 |
| Stack | -0.50 | External closing pair is T 212-G 2397 |
| Stack | -1.40 | External closing pair is T 213-G 2396 |
| Stack | -2.40 | External closing pair is G 214-C 2395 |
| Stack | -0.90 | External closing pair is A 215-T 2394 |
| Stack | -0.90 | External closing pair is A 216-T 2393 |
| Helix | -16.90 | 12 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 217-T 2392 25 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 270-G 2390 |
| Stack | -2.40 | External closing pair is T 271-A 2389 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is C 272-G 2388 |
| Stack | -0.90 | External closing pair is A 275-T 2385 |
| Stack | -0.60 | External closing pair is A 276-T 2384 |
| Stack | -1.30 | External closing pair is G 277-T 2383 |
| Stack | -0.90 | External closing pair is A 278-T 2382 |
| Stack | -2.10 | External closing pair is A 279-T 2381 |
| Stack | -3.40 | External closing pair is G 280-C 2380 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 281-G 2379 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 283-T 2262 |
| Stack | -3.30 | External closing pair is C 284-G 2261 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 285-G 2260 |
| Stack | -2.40 | External closing pair is G 286-C 2258 |
| Stack | -1.10 | External closing pair is A 287-T 2257 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 288-A 2256 |
| Stack | -0.60 | External closing pair is T 290-G 2255 |
| Stack | -0.90 | External closing pair is T 291-A 2254 |
| Stack | -1.30 | External closing pair is T 292-A 2253 |
| Stack | -1.10 | External closing pair is A 293-T 2252 |
| Helix | -3.90 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 294-A 2251 21 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 332-T 2249 |
| Stack | -0.90 | External closing pair is A 333-T 2248 |
| Stack | -2.10 | External closing pair is A 334-T 2247 |
| Stack | -2.20 | External closing pair is G 335-C 2246 |
| Stack | -1.30 | External closing pair is T 336-A 2245 |
| Helix | -7.40 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 337-T 2244 |
| Stack | -3.30 | External closing pair is G 339-C 2242 |
| Stack | -2.40 | External closing pair is G 340-C 2241 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 341-T 2240 |
| Stack | -0.90 | External closing pair is A 343-T 2239 |
| Stack | -1.40 | External closing pair is A 344-T 2238 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is T 345-G 2237 |
| Stack | -0.90 | External closing pair is A 348-T 2235 |
| Stack | -2.20 | External closing pair is A 349-T 2234 |
| Stack | -2.40 | External closing pair is C 350-G 2233 |
| Stack | -2.40 | External closing pair is G 351-C 2232 |
| Stack | -2.20 | External closing pair is A 352-T 2231 |
| Stack | -2.10 | External closing pair is C 353-G 2230 |
| Helix | -12.20 | 7 base pairs. |
| Interior loop | 2.10 | External closing pair is T 354-A 2229 |
| Stack | -3.40 | External closing pair is G 357-C 2226 |
| Stack | -3.30 | External closing pair is C 358-G 2225 |
| Stack | -2.10 | External closing pair is C 359-G 2224 |
| Stack | -1.30 | External closing pair is T 360-A 2223 |
| Helix | -10.10 | 5 base pairs. |
| Bulge loop | 5.20 | External closing pair is T 361-G 2222 |
| Stack | -3.30 | External closing pair is C 362-G 2213 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 363-G 2212 |
| Stack | -1.30 | External closing pair is T 365-A 2210 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 366-G 2209 |
| Stack | -2.10 | External closing pair is T 369-A 2206 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.80 | External closing pair is G 370-C 2205 |
| Stack | -2.20 | External closing pair is G 373-C 2204 |
| Stack | -0.90 | External closing pair is T 374-A 2203 |
| Stack | -1.30 | External closing pair is T 375-A 2202 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 376-T 2201 |
| Stack | -2.20 | External closing pair is A 380-T 2198 |
| Stack | -2.10 | External closing pair is C 381-G 2197 |
| Stack | -2.10 | External closing pair is A 382-T 2196 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 383-C 2195 |
| Stack | -2.10 | External closing pair is T 384-A 2193 |
| Stack | -2.20 | External closing pair is G 385-C 2192 |
| Stack | -0.90 | External closing pair is T 386-A 2191 |
| Stack | -2.10 | External closing pair is T 387-A 2190 |
| Helix | -7.30 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 388-C 2189 |
| Stack | -2.20 | External closing pair is A 389-T 2187 |
| Stack | -3.30 | External closing pair is C 390-G 2186 |
| Stack | -2.10 | External closing pair is C 391-G 2185 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 392-T 2184 |
| Stack | -1.00 | External closing pair is T 393-G 2182 |
| Stack | -2.20 | External closing pair is A 394-T 2181 |
| Stack | -3.30 | External closing pair is C 395-G 2180 |
| Stack | -2.10 | External closing pair is C 396-G 2179 |
| Stack | -2.10 | External closing pair is A 397-T 2178 |
| Helix | -10.70 | 6 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 398-C 2177 26 ss bases & 4 closing helices. |
| Stack | -1.40 | External closing pair is G 2140-T 2171 |
| Stack | -2.10 | External closing pair is T 2141-A 2170 |
| Stack | -3.30 | External closing pair is G 2142-C 2169 |
| Stack | -3.40 | External closing pair is G 2143-C 2168 |
| Stack | -2.10 | External closing pair is C 2144-G 2167 |
| Stack | -0.90 | External closing pair is T 2145-A 2166 |
| Helix | -13.20 | 7 base pairs. |
| Bulge loop | 3.30 | External closing pair is T 2146-A 2165 |
| Stack | -2.10 | External closing pair is C 2147-G 2162 |
| Stack | -0.60 | External closing pair is A 2148-T 2161 |
| Stack | -2.50 | External closing pair is G 2149-T 2160 |
| Stack | -2.10 | External closing pair is C 2150-G 2159 |
| Stack | -1.00 | External closing pair is T 2151-G 2158 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 5.00 | Closing pair is A 2152-T 2157 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.20 | External closing pair is G 410-C 2109 |
| Stack | -2.10 | External closing pair is T 411-A 2108 |
| Stack | -2.40 | External closing pair is G 412-C 2107 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 413-T 2106 |
| Stack | -1.30 | External closing pair is G 415-T 2104 |
| Stack | -2.10 | External closing pair is A 416-T 2103 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 4.20 | External closing pair is G 417-C 2102 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -3.30 | External closing pair is C 418-G 2078 |
| Stack | -2.10 | External closing pair is C 419-G 2077 |
| Stack | -0.90 | External closing pair is A 420-T 2076 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 421-T 2075 |
| Stack | -1.40 | External closing pair is A 424-T 2072 |
| Stack | -1.00 | External closing pair is T 425-G 2071 |
| Stack | -2.20 | External closing pair is A 426-T 2070 |
| Stack | -3.30 | External closing pair is C 427-G 2069 |
| Stack | -2.10 | External closing pair is C 428-G 2068 |
| Stack | -0.90 | External closing pair is A 429-T 2067 |
| Stack | -2.20 | External closing pair is A 430-T 2066 |
| Stack | -2.10 | External closing pair is C 431-G 2065 |
| Stack | -2.10 | External closing pair is T 432-A 2064 |
| Helix | -17.30 | 10 base pairs. |
| Multi-loop | 2.00 | External closing pair is G 433-C 2063 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 1683-A 2058 |
| Stack | -3.30 | External closing pair is G 1684-C 2057 |
| Stack | -3.40 | External closing pair is G 1685-C 2056 |
| Helix | -8.80 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 1686-G 2055 15 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -2.10 | External closing pair is C 1694-G 2026 |
| Stack | -2.40 | External closing pair is T 1695-A 2025 |
| Stack | -3.30 | External closing pair is C 1696-G 2024 |
| Stack | -2.10 | External closing pair is C 1697-G 2023 |
| Stack | -0.60 | External closing pair is A 1698-T 2022 |
| Helix | -10.50 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1699-T 2021 |
| Stack | -1.30 | External closing pair is G 1701-T 2019 |
| Stack | -2.20 | External closing pair is A 1702-T 2018 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 1703-G 2017 |
| Stack | -3.40 | External closing pair is G 1705-C 2016 |
| Stack | -2.40 | External closing pair is C 1706-G 2015 |
| Stack | -2.40 | External closing pair is G 1707-C 2014 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1708-T 2013 |
| Stack | -1.00 | External closing pair is T 1713-G 2011 |
| Stack | -1.10 | External closing pair is A 1714-T 2010 |
| Stack | -1.30 | External closing pair is T 1715-A 2009 |
| Stack | -0.90 | External closing pair is A 1716-T 2008 |
| Stack | -1.10 | External closing pair is A 1717-T 2007 |
| Stack | -1.30 | External closing pair is T 1718-A 2006 |
| Stack | -1.00 | External closing pair is T 1719-G 2005 |
| Stack | -1.10 | External closing pair is A 1720-T 2004 |
| Helix | -8.80 | 9 base pairs. |
| Interior loop | 4.70 | External closing pair is T 1721-A 2003 |
| Stack | -2.40 | External closing pair is T 1723-A 1998 |
| Stack | -2.10 | External closing pair is C 1724-G 1997 |
| Stack | -2.10 | External closing pair is T 1725-A 1996 |
| Stack | -2.40 | External closing pair is G 1726-C 1995 |
| Stack | -0.90 | External closing pair is A 1727-T 1994 |
| Stack | -2.10 | External closing pair is A 1728-T 1993 |
| Helix | -12.00 | 7 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 1729-C 1992 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 1733-A 1936 |
| Stack | -3.30 | External closing pair is C 1734-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 1735-G 1934 19 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is T 1755-G 1923 |
| Stack | -3.40 | External closing pair is G 1756-C 1922 |
| Helix | -4.80 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 1757-G 1921 |
| Stack | -1.40 | External closing pair is T 1760-G 1919 |
| Stack | -2.40 | External closing pair is G 1761-C 1918 |
| Stack | -2.10 | External closing pair is A 1762-T 1917 |
| Stack | -2.20 | External closing pair is G 1763-C 1916 |
| Stack | -0.90 | External closing pair is T 1764-A 1915 |
| Helix | -9.00 | 6 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1765-A 1914 11 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 1860-A 1912 |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.20 | External closing pair is A 1742-T 1751 |
| Stack | -2.40 | External closing pair is C 1743-G 1750 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1744-C 1749 |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -2.10 | External closing pair is A 438-T 1662 |
| Stack | -2.20 | External closing pair is G 439-C 1661 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 440-A 1660 |
| Stack | -2.40 | External closing pair is T 442-A 1658 |
| Stack | -2.10 | External closing pair is C 443-G 1657 |
| Stack | -2.10 | External closing pair is T 444-A 1656 |
| Stack | -2.40 | External closing pair is G 445-C 1655 |
| Stack | -0.90 | External closing pair is A 446-T 1654 |
| Stack | -0.90 | External closing pair is A 447-T 1653 |
| Stack | -0.90 | External closing pair is A 448-T 1652 |
| Stack | -2.20 | External closing pair is A 449-T 1651 |
| Helix | -13.90 | 9 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 450-G 1650 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.40 | External closing pair is G 452-C 1627 |
| Stack | -0.90 | External closing pair is A 453-T 1626 |
| Stack | -2.20 | External closing pair is A 454-T 1625 |
| Helix | -5.50 | 4 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 455-G 1624 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 464-C 1601 |
| Stack | -1.10 | External closing pair is A 465-T 1600 |
| Stack | -0.90 | External closing pair is T 466-A 1599 |
| Stack | -2.10 | External closing pair is T 467-A 1598 |
| Helix | -6.50 | 5 base pairs. |
| Multi-loop | 0.70 | External closing pair is G 468-C 1597 4 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 979-C 1595 |
| Helix | -3.30 | 2 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 980-C 1594 |
| Stack | -0.90 | External closing pair is T 982-A 1593 |
| Stack | -2.10 | External closing pair is T 983-A 1592 |
| Stack | -3.30 | External closing pair is G 984-C 1591 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is G 985-C 1590 |
| Stack | -0.90 | External closing pair is T 991-A 1586 |
| Stack | -2.40 | External closing pair is T 992-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 993-G 1584 |
| Stack | -2.10 | External closing pair is T 994-A 1582 |
| Stack | -2.20 | External closing pair is G 995-C 1581 |
| Stack | -1.30 | External closing pair is T 996-A 1580 |
| Stack | -1.10 | External closing pair is A 997-T 1579 |
| Stack | -1.30 | External closing pair is T 998-A 1578 |
| Stack | -0.50 | External closing pair is T 999-G 1577 |
| Stack | -0.60 | External closing pair is T 1000-G 1576 |
| Stack | -2.10 | External closing pair is T 1001-A 1575 |
| Stack | -2.20 | External closing pair is G 1002-C 1574 |
| Helix | -13.40 | 10 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1003-A 1573 30 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1511-A 1567 |
| Stack | -0.90 | External closing pair is T 1512-A 1566 |
| Stack | -0.90 | External closing pair is T 1513-A 1565 |
| Stack | -0.90 | External closing pair is T 1514-A 1564 |
| Stack | -2.10 | External closing pair is T 1515-A 1563 |
| Stack | -3.40 | External closing pair is G 1516-C 1562 |
| Stack | -2.10 | External closing pair is C 1517-G 1561 |
| Helix | -11.20 | 8 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 1518-T 1560 |
| Stack | -3.40 | External closing pair is G 1522-C 1559 |
| Stack | -2.10 | External closing pair is C 1523-G 1558 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1524-T 1557 |
| Stack | -1.30 | External closing pair is T 1526-A 1555 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -7.90 | 6 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -1.30 | External closing pair is G 1024-T 1505 |
| Stack | -2.20 | External closing pair is A 1025-T 1504 |
| Stack | -2.10 | External closing pair is C 1026-G 1503 |
| Stack | -0.90 | External closing pair is T 1027-A 1502 |
| Stack | -2.10 | External closing pair is T 1028-A 1501 |
| Stack | -3.40 | External closing pair is G 1029-C 1500 |
| Stack | -2.10 | External closing pair is C 1030-G 1499 |
| Helix | -14.10 | 8 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1031-A 1498 14 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -0.90 | External closing pair is A 1121-T 1455 |
| Stack | -2.10 | External closing pair is A 1122-T 1454 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1123-C 1453 |
| Stack | -2.10 | External closing pair is A 1124-T 1451 |
| Stack | -1.50 | External closing pair is G 1125-C 1450 |
| Stack | -1.30 | External closing pair is G 1126-T 1449 |
| Stack | -2.20 | External closing pair is A 1127-T 1448 |
| Stack | -1.40 | External closing pair is C 1128-G 1447 |
| Stack | -2.10 | External closing pair is G 1129-T 1446 |
| Stack | -2.40 | External closing pair is G 1130-C 1445 |
| Stack | -0.60 | External closing pair is A 1131-T 1444 |
| Stack | -1.40 | External closing pair is G 1132-T 1443 |
| Stack | -1.30 | External closing pair is T 1133-A 1442 |
| Helix | -16.30 | 11 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1134-G 1441 |
| Stack | -2.40 | External closing pair is T 1136-A 1439 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1137-G 1438 30 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -1.30 | External closing pair is T 1032-A 1114 |
| Stack | -0.60 | External closing pair is T 1033-G 1113 |
| Stack | -2.10 | External closing pair is T 1034-A 1112 |
| Stack | -2.20 | External closing pair is G 1035-C 1111 |
| Stack | -2.40 | External closing pair is T 1036-A 1110 |
| Stack | -2.10 | External closing pair is C 1037-G 1109 |
| Stack | -2.10 | External closing pair is T 1038-A 1108 |
| Helix | -12.80 | 8 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1039-C 1107 |
| Stack | -2.40 | External closing pair is T 1051-A 1095 |
| Stack | -2.10 | External closing pair is C 1052-G 1094 |
| Stack | -2.10 | External closing pair is T 1053-A 1093 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is G 1054-C 1092 |
| Stack | -2.10 | External closing pair is T 1067-A 1091 |
| Stack | -2.40 | External closing pair is G 1068-C 1090 |
| Stack | -0.90 | External closing pair is A 1069-T 1089 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 2.60 | External closing pair is A 1070-T 1088 |
| Stack | -2.10 | External closing pair is T 1073-A 1084 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 1074-C 1083 |
| Stack | -2.40 | External closing pair is G 470-C 976 |
| Stack | -0.90 | External closing pair is A 471-T 975 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 1.30 | External closing pair is A 472-T 974 15 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 496-G 968 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 497-A 967 |
| Stack | -3.40 | External closing pair is G 498-C 965 |
| Stack | -2.10 | External closing pair is C 499-G 964 |
| Stack | -1.10 | External closing pair is A 500-T 963 |
| Stack | -1.30 | External closing pair is T 501-A 962 |
| Stack | -0.90 | External closing pair is A 502-T 961 |
| Helix | -8.80 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 503-T 960 5 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 524-T 957 |
| Stack | -3.40 | External closing pair is G 525-C 956 |
| Stack | -2.10 | External closing pair is C 526-G 955 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 527-T 954 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 573-G 953 |
| Stack | -1.10 | External closing pair is A 574-T 952 |
| Stack | -2.40 | External closing pair is T 575-A 951 |
| Stack | -3.30 | External closing pair is C 576-G 950 |
| Helix | -8.90 | 5 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 577-G 949 18 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 582-A 871 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -15.30 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -9.20 | 6 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.10 | External closing pair is C 480-G 492 |
| Stack | -0.90 | External closing pair is A 481-T 491 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 482-T 490 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -0.50 | External closing pair is G 236-T 263 |
| Helix | -0.50 | 2 base pairs. |
| Interior loop | 0.20 | External closing pair is G 237-T 262 |
| Stack | -2.40 | External closing pair is T 240-A 259 |
| Stack | -3.30 | External closing pair is C 241-G 258 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 242-G 257 |
| Stack | -2.10 | External closing pair is T 243-A 255 |
| Stack | -2.20 | External closing pair is G 244-C 254 |
| Stack | -1.00 | External closing pair is T 245-A 253 |
| Stack | -1.40 | External closing pair is G 246-T 252 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 247-A 251 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 37
seq.txt
ΔG = -805.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 3.00 | External closing pair is G 46-C 3102 9 ss bases & 5 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.10 | External closing pair is T 2565-A 2662 |
| Stack | -3.30 | External closing pair is G 2566-C 2661 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is G 2567-C 2660 |
| Stack | -1.00 | External closing pair is T 2574-A 2652 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2575-T 2651 |
| Stack | -1.00 | External closing pair is T 2579-G 2647 |
| Stack | -0.60 | External closing pair is A 2580-T 2646 |
| Stack | -2.50 | External closing pair is G 2581-T 2645 |
| Stack | -2.10 | External closing pair is C 2582-G 2644 |
| Stack | -1.00 | External closing pair is T 2583-A 2643 |
| Stack | -1.30 | External closing pair is G 2584-T 2642 |
| Stack | -0.90 | External closing pair is A 2585-T 2641 |
| Stack | -2.10 | External closing pair is A 2586-T 2640 |
| Stack | -3.40 | External closing pair is G 2587-C 2639 |
| Helix | -14.90 | 10 base pairs. |
| Bulge loop | 4.90 | External closing pair is C 2588-G 2638 |
| Stack | -3.30 | External closing pair is G 2599-C 2637 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2600-C 2636 |
| Stack | -1.30 | External closing pair is G 2602-T 2634 |
| Stack | -1.40 | External closing pair is A 2603-T 2633 |
| Stack | 0.30 | External closing pair is T 2604-G 2632 |
| Stack | -1.40 | External closing pair is G 2605-T 2631 |
| Stack | -2.40 | External closing pair is T 2606-A 2630 |
| Stack | -2.40 | External closing pair is C 2607-G 2629 |
| Stack | -2.50 | External closing pair is G 2608-C 2628 |
| Helix | -11.10 | 8 base pairs. |
| Hairpin loop | 6.60 | Closing pair is T 2609-G 2627 |
| Stack | -2.20 | External closing pair is A 74-T 2562 |
| Stack | -3.30 | External closing pair is C 75-G 2561 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 2.80 | External closing pair is C 76-G 2560 |
| Stack | -2.10 | External closing pair is C 77-G 2557 |
| Stack | -0.90 | External closing pair is A 78-T 2556 |
| Stack | -1.10 | External closing pair is A 79-T 2555 |
| Stack | -2.40 | External closing pair is T 80-A 2554 |
| Stack | -3.30 | External closing pair is C 81-G 2553 |
| Stack | -2.10 | External closing pair is C 82-G 2552 |
| Helix | -11.90 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 83-T 2551 |
| Stack | -1.10 | External closing pair is A 88-T 2550 |
| Stack | -0.90 | External closing pair is T 89-A 2549 |
| Stack | -2.10 | External closing pair is T 90-A 2548 |
| Helix | -4.10 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 91-C 2547 |
| Stack | -0.90 | External closing pair is T 92-A 2545 |
| Stack | -2.10 | External closing pair is T 93-A 2544 |
| Stack | -2.50 | External closing pair is G 94-C 2543 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 95-G 2542 |
| Stack | -3.40 | External closing pair is G 97-C 2540 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.30 | External closing pair is C 98-G 2539 |
| Stack | -2.20 | External closing pair is G 100-C 2536 |
| Stack | -0.90 | External closing pair is T 101-A 2535 |
| Stack | -0.90 | External closing pair is T 102-A 2534 |
| Stack | -1.30 | External closing pair is T 103-A 2533 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 104-G 2532 7 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 170-T 2529 |
| Stack | -2.40 | External closing pair is T 171-A 2528 |
| Stack | -2.10 | External closing pair is C 172-G 2527 |
| Stack | -2.10 | External closing pair is A 173-T 2526 |
| Stack | -2.20 | External closing pair is G 174-C 2525 |
| Stack | -1.30 | External closing pair is T 175-A 2524 |
| Stack | -1.40 | External closing pair is A 176-T 2523 |
| Helix | -12.60 | 8 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 177-G 2522 15 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 977-G 2513 |
| Stack | -1.40 | External closing pair is C 978-G 2512 |
| Stack | -2.10 | External closing pair is G 979-T 2511 |
| Stack | -2.40 | External closing pair is G 980-C 2510 |
| Stack | -1.10 | External closing pair is A 981-T 2509 |
| Helix | -10.30 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 982-A 2508 |
| Stack | -1.40 | External closing pair is T 983-G 2506 |
| Stack | -3.30 | External closing pair is G 984-C 2505 |
| Helix | -4.70 | 3 base pairs. |
| Interior loop | 2.70 | External closing pair is G 985-C 2504 |
| Stack | -2.10 | External closing pair is C 987-G 2500 |
| Stack | -0.90 | External closing pair is A 988-T 2499 |
| Stack | -1.40 | External closing pair is A 989-T 2498 |
| Stack | -0.60 | External closing pair is T 990-G 2497 |
| Stack | -0.90 | External closing pair is T 991-A 2496 |
| Stack | -2.40 | External closing pair is T 992-A 2495 |
| Stack | -2.10 | External closing pair is C 993-G 2494 |
| Stack | 0.30 | External closing pair is T 994-G 2493 |
| Stack | -1.40 | External closing pair is G 995-T 2492 |
| Stack | -1.30 | External closing pair is T 996-A 2491 |
| Stack | -1.10 | External closing pair is A 997-T 2490 |
| Stack | -1.30 | External closing pair is T 998-A 2489 |
| Stack | -0.60 | External closing pair is T 999-G 2488 |
| Stack | -0.90 | External closing pair is T 1000-A 2487 |
| Helix | -16.70 | 15 base pairs. |
| Interior loop | -0.40 | External closing pair is T 1001-A 2486 |
| Stack | -1.50 | External closing pair is T 1003-G 2484 |
| Helix | -1.50 | 2 base pairs. |
| Multi-loop | 4.00 | External closing pair is C 1004-G 2483 4 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 1039-T 2481 |
| Stack | -2.10 | External closing pair is C 1040-G 2480 |
| Stack | -1.00 | External closing pair is T 1041-G 2479 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 1042-T 2478 |
| Stack | -0.90 | External closing pair is T 1045-A 2475 |
| Stack | -1.30 | External closing pair is T 1046-A 2474 |
| Helix | -2.20 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1047-G 2473 |
| Stack | -0.90 | External closing pair is T 1050-A 2472 |
| Stack | -2.40 | External closing pair is T 1051-A 2471 |
| Stack | -2.10 | External closing pair is C 1052-G 2470 |
| Stack | -1.00 | External closing pair is T 1053-A 2469 |
| Stack | -2.50 | External closing pair is G 1054-T 2468 |
| Stack | -3.30 | External closing pair is C 1055-G 2467 |
| Stack | -2.10 | External closing pair is C 1056-G 2466 |
| Stack | -1.10 | External closing pair is A 1057-T 2465 |
| Stack | -0.90 | External closing pair is T 1058-A 2464 |
| Stack | -0.90 | External closing pair is T 1059-A 2463 |
| Helix | -17.20 | 11 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1060-A 2462 |
| Stack | -2.40 | External closing pair is T 1063-A 2458 |
| Stack | -2.10 | External closing pair is C 1064-G 2457 |
| Stack | -0.90 | External closing pair is A 1065-T 2456 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1066-T 2455 |
| Stack | -2.40 | External closing pair is G 1068-C 2453 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1069-T 2452 10 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -2.20 | External closing pair is G 2233-C 2427 |
| Stack | -0.90 | External closing pair is T 2234-A 2426 |
| Stack | -2.40 | External closing pair is T 2235-A 2425 |
| Stack | -1.40 | External closing pair is C 2236-G 2424 |
| Stack | -1.40 | External closing pair is G 2237-T 2423 |
| Helix | -8.30 | 6 base pairs. |
| Interior loop | 2.00 | External closing pair is T 2238-A 2422 |
| Stack | -3.30 | External closing pair is C 2241-G 2420 |
| Stack | -3.30 | External closing pair is C 2242-G 2419 |
| Helix | -6.60 | 3 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 2243-G 2418 21 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 2406-G 2413 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 0.20 | Closing pair is G 2407-C 2412 |
| Stack | -2.10 | External closing pair is C 2246-G 2390 |
| Stack | -1.30 | External closing pair is T 2247-A 2389 |
| Helix | -3.40 | 3 base pairs. |
| Bulge loop | 3.20 | External closing pair is T 2248-G 2388 |
| Stack | -1.30 | External closing pair is T 2249-A 2386 |
| Stack | -0.90 | External closing pair is A 2250-T 2385 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.50 | External closing pair is A 2251-T 2384 |
| Stack | -0.90 | External closing pair is A 2253-T 2382 |
| Stack | -2.10 | External closing pair is A 2254-T 2381 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.60 | External closing pair is G 2255-C 2380 |
| Stack | -1.40 | External closing pair is T 2262-G 2374 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -15.70 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -2.50 | External closing pair is G 1071-T 2231 |
| Stack | -2.10 | External closing pair is C 1072-G 2230 |
| Stack | -2.10 | External closing pair is T 1073-A 2229 |
| Stack | -3.30 | External closing pair is G 1074-C 2228 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 2.90 | External closing pair is G 1075-C 2227 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1174-C 2226 |
| Stack | -3.30 | External closing pair is C 1175-G 2225 |
| Stack | -2.10 | External closing pair is C 1176-G 2224 |
| Stack | -2.40 | External closing pair is T 1177-A 2223 |
| Helix | -11.20 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1178-G 2222 |
| Stack | -2.10 | External closing pair is A 1179-T 2220 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.00 | External closing pair is G 1180-C 2219 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1209-A 2215 |
| Stack | -1.40 | External closing pair is A 1210-T 2214 |
| Stack | -1.50 | External closing pair is T 1211-G 2213 |
| Stack | -2.10 | External closing pair is C 1212-G 2212 |
| Stack | -1.10 | External closing pair is A 1213-T 2211 |
| Stack | -1.30 | External closing pair is T 1214-A 2210 |
| Helix | -8.70 | 7 base pairs. |
| Interior loop | 3.80 | External closing pair is T 1215-G 2209 |
| Stack | -2.10 | External closing pair is T 1217-A 2206 |
| Stack | -3.30 | External closing pair is G 1218-C 2205 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | 0.10 | External closing pair is G 1219-C 2204 |
| Stack | -0.90 | External closing pair is A 1222-T 2201 |
| Stack | -0.90 | External closing pair is A 1223-T 2200 |
| Stack | -0.60 | External closing pair is A 1224-T 2199 |
| Stack | -2.50 | External closing pair is G 1225-T 2198 |
| Helix | -4.90 | 5 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 1226-G 2197 13 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2156-C 2195 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2157-A 2194 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -1.00 | External closing pair is T 1236-A 2152 |
| Stack | -2.10 | External closing pair is G 1237-T 2151 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 1238-C 2150 |
| Stack | -2.10 | External closing pair is C 1240-G 2149 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is T 1241-A 2148 |
| Stack | -3.40 | External closing pair is G 1245-C 2144 |
| Stack | -2.10 | External closing pair is C 1246-G 2143 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1247-G 2142 |
| Stack | -2.10 | External closing pair is C 1249-G 2140 |
| Stack | -1.00 | External closing pair is T 1250-A 2139 |
| Stack | -1.30 | External closing pair is G 1251-T 2138 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 1.00 | External closing pair is A 1252-T 2137 |
| Stack | -2.10 | External closing pair is C 1254-G 2135 |
| Stack | -0.90 | External closing pair is A 1255-T 2134 |
| Stack | -2.20 | External closing pair is A 1256-T 2133 |
| Stack | -3.30 | External closing pair is C 1257-G 2132 |
| Stack | -2.10 | External closing pair is C 1258-G 2131 |
| Stack | -0.90 | External closing pair is T 1259-A 2130 |
| Stack | -1.30 | External closing pair is T 1260-A 2129 |
| Helix | -12.80 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1261-G 2128 9 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 2041-C 2120 |
| Stack | -1.50 | External closing pair is T 2042-G 2119 |
| Stack | -2.10 | External closing pair is C 2043-G 2118 |
| Stack | -1.10 | External closing pair is A 2044-T 2117 |
| Helix | -7.20 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 2045-A 2116 |
| Stack | -3.30 | External closing pair is G 2047-C 2114 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 2.80 | External closing pair is G 2048-C 2113 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -1.40 | External closing pair is G 1264-T 2040 |
| Stack | -0.90 | External closing pair is T 1265-A 2039 |
| Stack | -0.90 | External closing pair is T 1266-A 2038 |
| Stack | -0.90 | External closing pair is T 1267-A 2037 |
| Stack | -2.40 | External closing pair is T 1268-A 2036 |
| Stack | -2.10 | External closing pair is C 1269-G 2035 |
| Stack | -2.20 | External closing pair is A 1270-T 2034 |
| Stack | -2.10 | External closing pair is C 1271-G 2033 |
| Stack | -2.10 | External closing pair is A 1272-T 2032 |
| Helix | -15.00 | 10 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 1273-C 2031 |
| Stack | -1.00 | External closing pair is T 1275-G 2030 |
| Stack | -0.90 | External closing pair is A 1276-T 2029 |
| Stack | -2.10 | External closing pair is A 1277-T 2028 |
| Stack | -2.50 | External closing pair is G 1278-C 2027 |
| Stack | -0.60 | External closing pair is T 1279-G 2026 |
| Helix | -7.10 | 6 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 1280-A 2025 16 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 1378-C 2016 |
| Stack | -1.40 | External closing pair is T 1379-G 2015 |
| Stack | -2.40 | External closing pair is G 1380-C 2014 |
| Stack | -1.10 | External closing pair is A 1381-T 2013 |
| Stack | -2.40 | External closing pair is T 1382-A 2012 |
| Stack | -2.10 | External closing pair is C 1383-G 2011 |
| Stack | -1.10 | External closing pair is A 1384-T 2010 |
| Helix | -13.00 | 8 base pairs. |
| Multi-loop | 3.50 | External closing pair is T 1385-A 2009 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1937-C 1995 |
| Stack | -0.90 | External closing pair is A 1938-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1939-T 1993 |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 1387-A 1936 |
| Stack | -3.30 | External closing pair is C 1388-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1389-G 1934 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1414-G 1924 |
| Stack | -2.40 | External closing pair is C 1415-G 1923 |
| Stack | -3.40 | External closing pair is G 1416-C 1922 |
| Helix | -9.10 | 4 base pairs. |
| Multi-loop | 2.90 | External closing pair is C 1417-G 1921 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 1853-G 1919 |
| Stack | -2.40 | External closing pair is G 1854-C 1918 |
| Helix | -4.80 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1855-T 1917 |
| Stack | -2.10 | External closing pair is T 1860-A 1912 |
| Stack | -2.20 | External closing pair is G 1861-C 1911 |
| Stack | -2.40 | External closing pair is T 1862-A 1910 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | -1.00 | External closing pair is C 1863-G 1909 |
| Stack | -2.40 | External closing pair is T 1865-A 1907 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 0.10 | External closing pair is C 1866-G 1906 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1898 |
| Stack | -2.40 | External closing pair is T 1888-A 1897 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 4.40 | Closing pair is C 1889-G 1896 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.20 | External closing pair is A 1427-T 1850 |
| Stack | -3.30 | External closing pair is C 1428-G 1849 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1429-G 1848 |
| Stack | -2.40 | External closing pair is T 1431-A 1847 |
| Stack | -2.10 | External closing pair is C 1432-G 1846 |
| Stack | -2.10 | External closing pair is A 1433-T 1845 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is G 1434-C 1844 |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -8.80 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is T 1284-A 1372 |
| Stack | -3.40 | External closing pair is G 1285-C 1371 |
| Stack | -2.10 | External closing pair is C 1286-G 1370 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 1287-A 1369 21 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1333-G 1361 |
| Stack | -2.10 | External closing pair is C 1334-G 1360 |
| Stack | -0.90 | External closing pair is A 1335-T 1359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1336-T 1358 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -3.30 | External closing pair is C 1183-G 1207 |
| Stack | -2.10 | External closing pair is C 1184-G 1206 |
| Stack | -2.20 | External closing pair is A 1185-T 1205 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 1186-G 1204 |
| Stack | -2.40 | External closing pair is T 1085-A 1169 |
| Stack | -2.10 | External closing pair is C 1086-G 1168 |
| Stack | -1.10 | External closing pair is A 1087-T 1167 |
| Stack | -1.30 | External closing pair is T 1088-A 1166 |
| Stack | -1.50 | External closing pair is T 1089-G 1165 |
| Helix | -8.40 | 6 base pairs. |
| Multi-loop | -0.60 | External closing pair is C 1090-G 1164 25 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 1132-C 1148 |
| Stack | -0.60 | External closing pair is T 1133-G 1147 |
| Stack | -2.10 | External closing pair is T 1134-A 1146 |
| Stack | -2.20 | External closing pair is G 1135-C 1145 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 5.90 | Closing pair is T 1136-A 1144 |
| Stack | -3.30 | External closing pair is C 1100-G 1130 |
| Stack | -2.40 | External closing pair is C 1101-G 1129 |
| Stack | -2.20 | External closing pair is G 1102-C 1128 |
| Stack | -2.40 | External closing pair is T 1103-A 1127 |
| Helix | -10.30 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1104-G 1126 |
| Stack | -2.40 | External closing pair is T 1106-A 1124 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 0.90 | External closing pair is C 1107-G 1123 |
| Stack | -2.10 | External closing pair is C 1111-G 1119 |
| Stack | -0.60 | External closing pair is A 1112-T 1118 |
| Helix | -2.70 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 1113-T 1117 |
| Stack | -2.20 | External closing pair is A 1006-T 1036 |
| Stack | -2.10 | External closing pair is C 1007-G 1035 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 2.60 | External closing pair is A 1008-T 1034 |
| Stack | -3.40 | External closing pair is G 1014-C 1030 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1015-G 1029 |
| Stack | -2.10 | External closing pair is A 1017-T 1027 |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.40 | External closing pair is T 178-A 969 |
| Stack | -2.10 | External closing pair is C 179-G 968 |
| Stack | -1.30 | External closing pair is T 180-A 967 |
| Helix | -5.80 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 181-T 966 |
| Stack | -2.10 | External closing pair is C 182-G 964 |
| Stack | -1.10 | External closing pair is A 183-T 963 |
| Stack | -1.30 | External closing pair is T 184-A 962 |
| Helix | -4.50 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 185-T 961 |
| Stack | -1.30 | External closing pair is T 188-A 958 |
| Helix | -1.30 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 189-T 957 |
| Stack | -3.40 | External closing pair is G 191-C 956 |
| Stack | -2.10 | External closing pair is C 192-G 955 |
| Stack | -1.40 | External closing pair is A 193-T 954 |
| Stack | -1.00 | External closing pair is T 194-G 953 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 195-T 952 5 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 893-A 951 |
| Stack | -1.50 | External closing pair is T 894-G 950 |
| Stack | -2.10 | External closing pair is C 895-G 949 |
| Stack | -0.90 | External closing pair is A 896-T 948 |
| Helix | -5.80 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 897-T 947 |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is A 197-T 888 |
| Stack | -3.40 | External closing pair is G 198-C 887 |
| Stack | -3.30 | External closing pair is C 199-G 886 |
| Helix | -8.80 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 200-G 885 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 582-A 871 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -15.30 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 38
seq.txt
ΔG = -805.50
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 46-C 3102 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 82-G 3087 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 2.20 | External closing pair is A 83-T 3086 |
| Stack | -2.40 | External closing pair is T 86-A 3083 |
| Stack | -2.10 | External closing pair is C 87-G 3082 |
| Stack | -1.10 | External closing pair is A 88-T 3081 |
| Stack | -0.90 | External closing pair is T 89-A 3080 |
| Stack | -2.10 | External closing pair is T 90-A 3079 |
| Helix | -8.60 | 6 base pairs. |
| Bulge loop | 3.70 | External closing pair is G 91-C 3078 |
| Stack | -0.90 | External closing pair is T 92-A 3074 |
| Stack | -2.10 | External closing pair is T 93-A 3073 |
| Stack | -2.20 | External closing pair is G 94-C 3072 |
| Stack | -0.90 | External closing pair is T 95-A 3071 |
| Helix | -6.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 96-A 3070 |
| Stack | -2.10 | External closing pair is T 99-A 3069 |
| Stack | -2.20 | External closing pair is G 100-C 3068 |
| Stack | -0.90 | External closing pair is T 101-A 3067 |
| Stack | -0.90 | External closing pair is T 102-A 3066 |
| Stack | -0.90 | External closing pair is T 103-A 3065 |
| Stack | -1.30 | External closing pair is T 104-A 3064 |
| Stack | -1.40 | External closing pair is A 105-T 3063 |
| Helix | -9.70 | 8 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 106-G 3062 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 3024-A 3058 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.90 | External closing pair is G 3025-C 3057 |
| Stack | -2.10 | External closing pair is G 3028-T 3054 |
| Stack | -2.20 | External closing pair is G 3029-C 3053 |
| Stack | -2.40 | External closing pair is T 3030-A 3052 |
| Stack | -2.10 | External closing pair is C 3031-G 3051 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 2.20 | External closing pair is A 3032-T 3050 |
| Stack | -2.10 | External closing pair is T 3035-A 3047 |
| Stack | -3.30 | External closing pair is G 3036-C 3046 |
| Stack | -2.50 | External closing pair is G 3037-C 3045 |
| Helix | -7.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 3038-G 3044 |
| Stack | -1.30 | External closing pair is G 108-T 3021 |
| Stack | -2.10 | External closing pair is A 109-T 3020 |
| Stack | -2.20 | External closing pair is G 110-C 3019 |
| Stack | -2.10 | External closing pair is T 111-A 3018 |
| Stack | -3.40 | External closing pair is G 112-C 3017 |
| Helix | -11.10 | 6 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 113-G 3016 20 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 250-C 3014 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 2.40 | External closing pair is A 251-T 3013 |
| Stack | -1.00 | External closing pair is T 252-G 3011 |
| Stack | -2.20 | External closing pair is A 253-T 3010 |
| Stack | -2.10 | External closing pair is C 254-G 3009 |
| Helix | -5.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 255-T 3008 |
| Stack | -2.10 | External closing pair is G 257-T 3006 |
| Stack | -2.40 | External closing pair is G 258-C 3005 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.20 | External closing pair is A 259-T 3004 |
| Stack | -1.30 | External closing pair is T 262-A 2999 |
| Stack | -1.00 | External closing pair is T 263-G 2998 |
| Stack | -2.20 | External closing pair is A 264-T 2997 |
| Helix | -4.50 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 265-G 2996 |
| Stack | -2.10 | External closing pair is C 267-G 2995 |
| Stack | -2.10 | External closing pair is A 268-T 2994 |
| Stack | -3.40 | External closing pair is G 269-C 2993 |
| Stack | -2.10 | External closing pair is C 270-G 2992 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is T 271-G 2991 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 277-C 2706 |
| Stack | -0.90 | External closing pair is A 278-T 2705 |
| Stack | -0.60 | External closing pair is A 279-T 2704 |
| Stack | -2.50 | External closing pair is G 280-T 2703 |
| Stack | -3.30 | External closing pair is C 281-G 2702 |
| Stack | -1.40 | External closing pair is C 282-G 2701 |
| Stack | -2.50 | External closing pair is G 283-T 2700 |
| Stack | -3.30 | External closing pair is C 284-G 2699 |
| Stack | -1.40 | External closing pair is C 285-G 2698 |
| Stack | -1.30 | External closing pair is G 286-T 2697 |
| Stack | -1.40 | External closing pair is A 287-T 2696 |
| Stack | -1.00 | External closing pair is T 288-G 2695 |
| Helix | -22.00 | 13 base pairs. |
| Interior loop | 7.90 | External closing pair is A 289-T 2694 |
| Stack | -1.40 | External closing pair is G 315-T 2692 |
| Stack | -2.40 | External closing pair is T 316-A 2691 |
| Stack | -2.10 | External closing pair is C 317-G 2690 |
| Stack | -1.00 | External closing pair is T 318-G 2689 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 319-T 2688 |
| Stack | -3.30 | External closing pair is C 320-G 2686 |
| Stack | -2.10 | External closing pair is C 321-G 2685 |
| Stack | -1.10 | External closing pair is A 322-T 2684 |
| Helix | -6.50 | 4 base pairs. |
| Multi-loop | 0.60 | External closing pair is T 323-A 2683 5 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 545-C 2681 |
| Stack | -2.40 | External closing pair is C 546-G 2680 |
| Helix | -5.80 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is G 547-C 2679 |
| Stack | -1.10 | External closing pair is A 549-T 2677 |
| Stack | -1.30 | External closing pair is T 550-A 2676 |
| Helix | -2.40 | 3 base pairs. |
| Interior loop | -2.90 | External closing pair is T 551-G 2675 |
| Stack | -1.40 | External closing pair is A 554-T 2672 |
| Stack | -1.50 | External closing pair is T 555-G 2671 |
| Stack | -2.10 | External closing pair is C 556-G 2670 |
| Helix | -5.00 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 557-T 2669 |
| Stack | -2.20 | External closing pair is G 558-C 2667 |
| Stack | -0.90 | External closing pair is T 559-A 2666 |
| Stack | -2.40 | External closing pair is T 560-A 2665 |
| Helix | -5.50 | 4 base pairs. |
| Multi-loop | 2.20 | External closing pair is C 561-G 2664 20 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.10 | External closing pair is T 566-A 1944 |
| Stack | -2.50 | External closing pair is G 567-C 1943 |
| Stack | -0.50 | External closing pair is T 568-G 1942 |
| Stack | -0.60 | External closing pair is T 569-G 1941 |
| Helix | -5.70 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 570-A 1940 |
| Stack | -2.40 | External closing pair is T 572-A 1938 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 573-G 1937 |
| Stack | -2.40 | External closing pair is T 575-A 1936 |
| Stack | -3.30 | External closing pair is C 576-G 1935 |
| Stack | -2.10 | External closing pair is C 577-G 1934 |
| Stack | -1.30 | External closing pair is T 578-A 1933 |
| Stack | -0.60 | External closing pair is A 579-T 1932 |
| Stack | -2.50 | External closing pair is G 580-T 1931 |
| Stack | -2.10 | External closing pair is C 581-G 1930 |
| Stack | -1.00 | External closing pair is T 582-A 1929 |
| Helix | -15.30 | 9 base pairs. |
| Interior loop | 3.00 | External closing pair is G 583-T 1928 |
| Stack | -2.20 | External closing pair is A 587-T 1925 |
| Stack | -3.30 | External closing pair is C 588-G 1924 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 0.70 | External closing pair is C 589-G 1923 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1911-G 1921 |
| Stack | -2.20 | External closing pair is A 1912-T 1920 |
| Helix | -4.30 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1913-G 1919 |
| Stack | -2.10 | External closing pair is C 593-G 1908 |
| Stack | -2.40 | External closing pair is T 594-A 1907 |
| Stack | -2.10 | External closing pair is C 595-G 1906 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.80 | External closing pair is T 596-A 1905 |
| Stack | -0.90 | External closing pair is T 599-A 1902 |
| Stack | -0.90 | External closing pair is T 600-A 1901 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | 4.40 | External closing pair is T 601-A 1900 |
| Stack | -2.40 | External closing pair is T 606-A 1897 |
| Stack | -2.10 | External closing pair is C 607-G 1896 |
| Stack | -2.40 | External closing pair is T 608-A 1895 |
| Stack | -2.10 | External closing pair is C 609-G 1894 |
| Stack | -1.00 | External closing pair is T 610-A 1893 |
| Helix | -10.00 | 6 base pairs. |
| Bulge loop | 6.50 | External closing pair is G 611-T 1892 |
| Stack | -0.90 | External closing pair is T 612-A 1874 |
| Stack | -1.00 | External closing pair is T 613-A 1873 |
| Stack | -2.50 | External closing pair is G 614-T 1872 |
| Stack | -3.30 | External closing pair is C 615-G 1871 |
| Helix | -7.70 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 616-G 1870 |
| Stack | -2.20 | External closing pair is G 618-C 1869 |
| Stack | -0.90 | External closing pair is T 619-A 1868 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 4.00 | External closing pair is T 620-A 1867 |
| Stack | -1.40 | External closing pair is A 623-T 1865 |
| Stack | -1.40 | External closing pair is T 624-G 1864 |
| Stack | -2.40 | External closing pair is G 625-C 1863 |
| Stack | -2.20 | External closing pair is A 626-T 1862 |
| Stack | -2.10 | External closing pair is C 627-G 1861 |
| Helix | -9.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 628-T 1860 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1792-A 1855 |
| Stack | -2.40 | External closing pair is C 1793-G 1854 |
| Stack | -2.40 | External closing pair is G 1794-C 1853 |
| Stack | -0.90 | External closing pair is A 1795-T 1852 |
| Helix | -8.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1796-T 1851 |
| Stack | -0.60 | External closing pair is T 1797-G 1848 |
| Stack | -1.30 | External closing pair is T 1798-A 1847 |
| Stack | -1.00 | External closing pair is T 1799-G 1846 |
| Stack | -2.10 | External closing pair is A 1800-T 1845 |
| Stack | -2.20 | External closing pair is G 1801-C 1844 |
| Stack | -1.00 | External closing pair is T 1802-A 1843 |
| Helix | -8.20 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 1803-T 1842 |
| Stack | -1.30 | External closing pair is T 1808-A 1837 |
| Stack | -1.00 | External closing pair is T 1809-G 1836 |
| Stack | -1.10 | External closing pair is A 1810-T 1835 |
| Stack | -2.10 | External closing pair is T 1811-A 1834 |
| Helix | -5.50 | 5 base pairs. |
| Hairpin loop | 4.80 | Closing pair is G 1812-C 1833 |
| Stack | -1.30 | External closing pair is G 630-T 1789 |
| Stack | -2.10 | External closing pair is A 631-T 1788 |
| Stack | -3.30 | External closing pair is G 632-C 1787 |
| Stack | -2.40 | External closing pair is G 633-C 1786 |
| Helix | -9.10 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 634-T 1785 |
| Stack | -2.40 | External closing pair is C 639-G 1784 |
| Stack | -3.30 | External closing pair is G 640-C 1783 |
| Stack | -2.40 | External closing pair is G 641-C 1782 |
| Stack | -1.10 | External closing pair is A 642-T 1781 |
| Helix | -9.20 | 5 base pairs. |
| Interior loop | 3.10 | External closing pair is T 643-A 1780 |
| Stack | -2.20 | External closing pair is G 648-C 1773 |
| Stack | -1.30 | External closing pair is T 649-A 1772 |
| Stack | -0.50 | External closing pair is T 650-G 1771 |
| Stack | -0.60 | External closing pair is T 651-G 1770 |
| Stack | -2.10 | External closing pair is T 652-A 1769 |
| Stack | -3.30 | External closing pair is G 653-C 1768 |
| Helix | -10.00 | 7 base pairs. |
| Multi-loop | 4.00 | External closing pair is G 654-C 1767 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 676-T 1765 |
| Stack | -2.20 | External closing pair is A 677-T 1764 |
| Stack | -2.10 | External closing pair is C 678-G 1763 |
| Stack | -2.40 | External closing pair is T 679-A 1762 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is C 680-G 1761 |
| Stack | -3.40 | External closing pair is G 682-C 1757 |
| Stack | -2.10 | External closing pair is C 683-G 1756 |
| Stack | -1.10 | External closing pair is A 684-T 1755 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 685-A 1754 |
| Stack | -2.50 | External closing pair is G 686-T 1751 |
| Stack | -2.40 | External closing pair is C 687-G 1750 |
| Stack | -3.40 | External closing pair is G 688-C 1749 |
| Stack | -2.10 | External closing pair is C 689-G 1748 |
| Stack | -1.10 | External closing pair is A 690-T 1747 |
| Helix | -11.50 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 691-A 1746 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.30 | External closing pair is T 692-A 1716 |
| Stack | -1.10 | External closing pair is A 693-T 1715 |
| Stack | -1.30 | External closing pair is T 694-A 1714 |
| Stack | -1.10 | External closing pair is A 695-T 1713 |
| Stack | -1.30 | External closing pair is T 696-A 1712 |
| Stack | -0.60 | External closing pair is T 697-G 1711 |
| Helix | -6.70 | 7 base pairs. |
| Interior loop | 1.70 | External closing pair is T 698-A 1710 |
| Stack | -2.40 | External closing pair is T 700-A 1708 |
| Stack | -2.40 | External closing pair is C 701-G 1707 |
| Stack | -3.40 | External closing pair is G 702-C 1706 |
| Helix | -8.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 703-G 1705 |
| Stack | -2.20 | External closing pair is G 705-C 1703 |
| Helix | -2.20 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 706-A 1702 |
| Stack | -2.10 | External closing pair is C 708-G 1701 |
| Stack | -2.20 | External closing pair is A 709-T 1700 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 710-G 1699 14 ss bases & 5 closing helices. |
| Stack | -2.40 | External closing pair is G 1648-C 1696 |
| Stack | -2.10 | External closing pair is A 1649-T 1695 |
| Stack | -2.20 | External closing pair is G 1650-C 1694 |
| Stack | -0.90 | External closing pair is T 1651-A 1693 |
| Stack | -0.90 | External closing pair is T 1652-A 1692 |
| Stack | -1.30 | External closing pair is T 1653-A 1691 |
| Helix | -9.80 | 7 base pairs. |
| Bulge loop | 4.50 | External closing pair is T 1654-G 1690 |
| Stack | -2.10 | External closing pair is C 1655-G 1684 |
| Stack | -2.10 | External closing pair is A 1656-T 1683 |
| Stack | -2.40 | External closing pair is G 1657-C 1682 |
| Stack | -0.90 | External closing pair is A 1658-T 1681 |
| Helix | -7.50 | 5 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 1659-T 1680 |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1071-C 1630 |
| Stack | -2.10 | External closing pair is C 1072-G 1629 |
| Stack | -2.10 | External closing pair is T 1073-A 1628 |
| Stack | -1.50 | External closing pair is G 1074-C 1627 |
| Stack | -1.30 | External closing pair is G 1075-T 1626 |
| Helix | -10.40 | 6 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 1076-T 1625 |
| Stack | -1.00 | External closing pair is T 1080-G 1624 |
| Stack | -0.90 | External closing pair is A 1081-T 1623 |
| Stack | -2.20 | External closing pair is A 1082-T 1622 |
| Stack | -2.10 | External closing pair is C 1083-G 1621 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is A 1084-T 1620 |
| Stack | -2.40 | External closing pair is T 1089-A 1616 |
| Stack | -2.10 | External closing pair is C 1090-G 1615 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 0.80 | External closing pair is A 1091-T 1614 |
| Stack | -2.40 | External closing pair is G 1094-C 1611 |
| Stack | -1.10 | External closing pair is A 1095-T 1610 |
| Stack | -2.40 | External closing pair is T 1096-A 1609 |
| Helix | -5.90 | 4 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 1097-G 1608 23 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1117-A 1593 |
| Stack | -2.10 | External closing pair is T 1118-A 1592 |
| Stack | -3.30 | External closing pair is G 1119-C 1591 |
| Stack | -2.40 | External closing pair is G 1120-C 1590 |
| Stack | -0.90 | External closing pair is A 1121-T 1589 |
| Stack | -2.10 | External closing pair is A 1122-T 1588 |
| Helix | -11.70 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1123-C 1587 17 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1364-T 1579 |
| Stack | -2.40 | External closing pair is T 1365-A 1578 |
| Stack | -2.10 | External closing pair is C 1366-G 1577 |
| Helix | -5.60 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1367-G 1576 13 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -0.90 | External closing pair is T 720-A 1070 |
| Stack | -1.30 | External closing pair is T 721-A 1069 |
| Stack | -1.00 | External closing pair is T 722-G 1068 |
| Stack | -1.10 | External closing pair is A 723-T 1067 |
| Stack | -0.90 | External closing pair is T 724-A 1066 |
| Stack | -2.10 | External closing pair is T 725-A 1065 |
| Stack | -2.40 | External closing pair is G 726-C 1064 |
| Helix | -9.70 | 8 base pairs. |
| Interior loop | 1.70 | External closing pair is A 727-T 1063 |
| Stack | -1.30 | External closing pair is G 729-T 1061 |
| Stack | -0.90 | External closing pair is A 730-T 1060 |
| Stack | -0.90 | External closing pair is A 731-T 1059 |
| Helix | -3.10 | 4 base pairs. |
| Interior loop | 2.50 | External closing pair is A 732-T 1058 |
| Stack | -3.30 | External closing pair is G 735-C 1056 |
| Stack | -3.40 | External closing pair is G 736-C 1055 |
| Helix | -6.70 | 3 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 737-G 1054 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -1.30 | External closing pair is T 746-A 772 |
| Stack | -0.90 | External closing pair is A 747-T 771 |
| Stack | -0.60 | External closing pair is A 748-T 770 |
| Stack | -1.40 | External closing pair is G 749-T 769 |
| Helix | -4.20 | 5 base pairs. |
| Interior loop | 3.70 | External closing pair is T 750-A 768 |
| Stack | -1.00 | External closing pair is T 752-A 765 |
| Stack | -2.10 | External closing pair is G 753-T 764 |
| Stack | -2.20 | External closing pair is G 754-C 763 |
| Stack | -2.40 | External closing pair is T 755-A 762 |
| Helix | -7.70 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 756-G 761 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -2.20 | External closing pair is G 326-C 542 |
| Stack | -0.90 | External closing pair is T 327-A 541 |
| Stack | -0.90 | External closing pair is T 328-A 540 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 329-A 539 5 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 373-C 537 |
| Stack | -0.90 | External closing pair is T 374-A 536 |
| Stack | -1.30 | External closing pair is T 375-A 535 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is A 376-T 534 |
| Stack | -2.10 | External closing pair is T 384-A 527 |
| Stack | -2.50 | External closing pair is G 385-C 526 |
| Stack | -0.60 | External closing pair is T 386-G 525 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is T 387-A 524 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.40 | External closing pair is G 132-C 248 |
| Stack | -2.20 | External closing pair is A 133-T 247 |
| Stack | -2.10 | External closing pair is C 134-G 246 |
| Stack | -2.20 | External closing pair is A 135-T 245 |
| Stack | -2.10 | External closing pair is C 136-G 244 |
| Helix | -11.00 | 6 base pairs. |
| Interior loop | 4.30 | External closing pair is A 137-T 243 |
| Stack | -2.20 | External closing pair is A 143-T 238 |
| Stack | -3.30 | External closing pair is C 144-G 237 |
| Stack | -2.10 | External closing pair is C 145-G 236 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 146-A 235 28 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 191-C 222 |
| Stack | -2.10 | External closing pair is C 192-G 221 |
| Stack | -1.10 | External closing pair is A 193-T 220 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is T 194-A 219 |
| Stack | -1.40 | External closing pair is C 200-G 214 |
| Stack | -0.50 | External closing pair is G 201-T 213 |
| Stack | -1.30 | External closing pair is G 202-T 212 |
| Stack | -1.40 | External closing pair is A 203-T 211 |
| Helix | -4.60 | 5 base pairs. |
| Hairpin loop | 4.90 | Closing pair is T 204-G 210 |
| Stack | -1.00 | External closing pair is T 154-A 181 |
| Stack | -2.10 | External closing pair is G 155-T 180 |
| Stack | -2.40 | External closing pair is G 156-C 179 |
| Stack | -0.90 | External closing pair is A 157-T 178 |
| Helix | -6.40 | 5 base pairs. |
| Bulge loop | 3.20 | External closing pair is A 158-T 177 |
| Stack | -2.50 | External closing pair is G 159-T 175 |
| Stack | -2.10 | External closing pair is C 160-G 174 |
| Stack | -2.10 | External closing pair is T 161-A 173 |
| Stack | -1.50 | External closing pair is G 162-C 172 |
| Helix | -8.20 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is G 163-T 171 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 39
seq.txt
ΔG = -805.30
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 67-C 2934 17 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1123-C 2929 |
| Stack | -2.10 | External closing pair is A 1124-T 2928 |
| Stack | -3.30 | External closing pair is G 1125-C 2927 |
| Stack | -2.40 | External closing pair is G 1126-C 2926 |
| Stack | -2.20 | External closing pair is A 1127-T 2925 |
| Helix | -12.40 | 6 base pairs. |
| Multi-loop | -2.50 | External closing pair is C 1128-G 2924 27 ss bases & 5 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.50 | External closing pair is G 1132-C 1148 |
| Stack | -0.60 | External closing pair is T 1133-G 1147 |
| Stack | -2.10 | External closing pair is T 1134-A 1146 |
| Stack | -2.20 | External closing pair is G 1135-C 1145 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 5.90 | Closing pair is T 1136-A 1144 |
| Stack | -2.40 | External closing pair is T 80-A 1121 |
| Stack | -3.30 | External closing pair is C 81-G 1120 |
| Stack | -2.10 | External closing pair is C 82-G 1119 |
| Helix | -7.80 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 83-T 1118 |
| Stack | -2.20 | External closing pair is G 85-C 1115 |
| Stack | -2.40 | External closing pair is T 86-A 1114 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 0.40 | External closing pair is C 87-G 1113 5 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.20 | External closing pair is G 91-C 1100 |
| Stack | -0.90 | External closing pair is T 92-A 1099 |
| Stack | -2.10 | External closing pair is T 93-A 1098 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is G 94-C 1097 |
| Stack | -2.10 | External closing pair is C 98-G 1094 |
| Stack | -2.10 | External closing pair is T 99-A 1093 |
| Stack | -2.20 | External closing pair is G 100-C 1092 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.90 | External closing pair is T 101-A 1091 31 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 832-A 1077 |
| Stack | -2.40 | External closing pair is T 833-A 1076 |
| Stack | -3.30 | External closing pair is C 834-G 1075 |
| Stack | -2.10 | External closing pair is C 835-G 1074 |
| Helix | -8.70 | 5 base pairs. |
| Multi-loop | 3.50 | External closing pair is A 836-T 1073 5 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1056-G 1068 |
| Stack | -1.10 | External closing pair is A 1057-T 1067 |
| Stack | -0.90 | External closing pair is T 1058-A 1066 |
| Helix | -4.10 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 1059-A 1065 |
| Stack | -2.10 | External closing pair is C 837-G 1054 |
| Stack | -2.10 | External closing pair is A 838-T 1053 |
| Stack | -2.40 | External closing pair is G 839-C 1052 |
| Stack | -0.90 | External closing pair is A 840-T 1051 |
| Stack | -1.10 | External closing pair is A 841-T 1050 |
| Helix | -8.60 | 6 base pairs. |
| Interior loop | 4.70 | External closing pair is T 842-A 1049 |
| Stack | -2.10 | External closing pair is A 844-T 1044 |
| Stack | -2.20 | External closing pair is G 845-C 1043 |
| Stack | -1.30 | External closing pair is T 846-A 1042 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is A 847-T 1041 |
| Stack | -2.40 | External closing pair is G 850-C 1037 |
| Stack | -2.20 | External closing pair is A 851-T 1036 |
| Stack | -2.10 | External closing pair is C 852-G 1035 |
| Stack | -0.90 | External closing pair is A 853-T 1034 |
| Stack | -0.60 | External closing pair is A 854-T 1033 |
| Stack | -1.30 | External closing pair is G 855-T 1032 |
| Helix | -9.50 | 7 base pairs. |
| Interior loop | 3.40 | External closing pair is A 856-T 1031 |
| Stack | -2.40 | External closing pair is C 863-G 1024 |
| Stack | -1.50 | External closing pair is G 864-C 1023 |
| Helix | -3.90 | 3 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 865-T 1022 |
| Stack | -0.90 | External closing pair is A 867-T 1021 |
| Stack | -0.60 | External closing pair is A 868-T 1020 |
| Stack | -2.50 | External closing pair is G 869-T 1019 |
| Helix | -4.00 | 4 base pairs. |
| Multi-loop | 2.00 | External closing pair is C 870-G 1018 3 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 955-C 1015 |
| Helix | -3.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 956-G 1014 |
| Stack | -1.10 | External closing pair is A 958-T 1013 |
| Helix | -1.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is T 959-A 1012 |
| Stack | -1.10 | External closing pair is A 962-T 1009 |
| Stack | -2.10 | External closing pair is T 963-A 1008 |
| Helix | -3.20 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 964-C 1007 |
| Stack | -1.30 | External closing pair is T 966-A 1006 |
| Stack | -2.10 | External closing pair is A 967-T 1005 |
| Stack | -2.40 | External closing pair is G 968-C 1004 |
| Stack | -2.20 | External closing pair is A 969-T 1003 |
| Stack | -2.10 | External closing pair is C 970-G 1002 |
| Helix | -10.10 | 6 base pairs. |
| Interior loop | 3.10 | External closing pair is A 971-T 1001 |
| Stack | -1.40 | External closing pair is C 978-G 995 |
| Stack | -2.10 | External closing pair is G 979-T 994 |
| Stack | -2.40 | External closing pair is G 980-C 993 |
| Helix | -5.90 | 4 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 981-T 992 |
| Stack | -2.20 | External closing pair is A 872-T 954 |
| Stack | -2.10 | External closing pair is C 873-G 953 |
| Stack | -1.10 | External closing pair is A 874-T 952 |
| Stack | -1.30 | External closing pair is T 875-A 951 |
| Helix | -6.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is T 876-G 950 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 116-G 811 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -3.40 | External closing pair is G 118-C 796 |
| Stack | -2.10 | External closing pair is C 119-G 795 |
| Stack | -0.90 | External closing pair is T 120-A 794 |
| Stack | -1.30 | External closing pair is T 121-A 793 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 122-T 792 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -2.40 | External closing pair is T 127-A 762 |
| Stack | -3.30 | External closing pair is C 128-G 761 |
| Stack | -1.40 | External closing pair is C 129-G 760 |
| Helix | -7.10 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is G 130-T 759 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 40
seq.txt
ΔG = -804.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -2.30 | 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1837-T 3134 |
| Stack | -1.10 | External closing pair is A 1838-T 3133 |
| Stack | -1.30 | External closing pair is T 1839-A 3132 |
| Stack | -0.90 | External closing pair is A 1840-T 3131 |
| Stack | -1.10 | External closing pair is A 1841-T 3130 |
| Helix | -5.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1842-A 3129 |
| Stack | -2.10 | External closing pair is C 1844-G 3127 |
| Stack | -2.10 | External closing pair is T 1845-A 3126 |
| Stack | -2.40 | External closing pair is G 1846-C 3125 |
| Stack | -2.10 | External closing pair is A 1847-T 3124 |
| Stack | -3.30 | External closing pair is G 1848-C 3123 |
| Stack | -2.20 | External closing pair is G 1849-C 3122 |
| Stack | -0.90 | External closing pair is T 1850-A 3121 |
| Stack | -0.90 | External closing pair is T 1851-A 3120 |
| Helix | -16.00 | 9 base pairs. |
| Multi-loop | 4.60 | External closing pair is T 1852-A 3119 12 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 3105-T 3115 |
| Stack | -3.30 | External closing pair is G 3106-C 3114 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 2.70 | Closing pair is G 3107-C 3113 |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1857-A 2665 |
| Stack | -2.10 | External closing pair is C 1858-G 2664 |
| Stack | -0.90 | External closing pair is T 1859-A 2663 |
| Stack | -2.10 | External closing pair is T 1860-A 2662 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 1.40 | External closing pair is G 1861-C 2661 16 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1947-A 2649 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -10.60 | 7 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -2.50 | External closing pair is G 1864-C 1943 |
| Stack | -1.50 | External closing pair is T 1865-G 1942 |
| Helix | -4.00 | 3 base pairs. |
| Multi-loop | 0.30 | External closing pair is C 1866-G 1941 10 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1887-A 1939 |
| Stack | -2.40 | External closing pair is T 1888-A 1938 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 1889-G 1937 |
| Stack | -2.10 | External closing pair is C 1890-G 1935 |
| Stack | -0.60 | External closing pair is T 1891-G 1934 |
| Stack | -1.30 | External closing pair is T 1892-A 1933 |
| Stack | -0.60 | External closing pair is A 1893-T 1932 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 0.50 | External closing pair is G 1894-T 1931 |
| Stack | -0.90 | External closing pair is A 1897-T 1928 |
| Stack | -0.90 | External closing pair is A 1898-T 1927 |
| Stack | -0.90 | External closing pair is A 1899-T 1926 |
| Helix | -2.70 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 1900-T 1925 |
| Stack | -2.40 | External closing pair is G 1906-C 1918 |
| Stack | -2.10 | External closing pair is A 1907-T 1917 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 3.50 | Closing pair is G 1908-C 1916 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.20 | External closing pair is G 558-C 1833 |
| Stack | -0.90 | External closing pair is T 559-A 1832 |
| Stack | -2.40 | External closing pair is T 560-A 1831 |
| Helix | -5.50 | 4 base pairs. |
| Interior loop | 2.20 | External closing pair is C 561-G 1830 |
| Stack | -0.90 | External closing pair is T 565-A 1824 |
| Stack | -2.10 | External closing pair is T 566-A 1823 |
| Stack | -2.20 | External closing pair is G 567-C 1822 |
| Stack | -0.90 | External closing pair is T 568-A 1821 |
| Stack | -1.30 | External closing pair is T 569-A 1820 |
| Helix | -7.40 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 570-G 1819 10 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is C 577-G 1529 |
| Stack | -1.30 | External closing pair is T 578-A 1528 |
| Stack | -0.60 | External closing pair is A 579-T 1527 |
| Stack | -2.50 | External closing pair is G 580-T 1526 |
| Stack | -2.10 | External closing pair is C 581-G 1525 |
| Stack | -2.10 | External closing pair is T 582-A 1524 |
| Stack | -3.40 | External closing pair is G 583-C 1523 |
| Helix | -14.10 | 8 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 584-G 1522 34 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.40 | External closing pair is G 611-T 1365 |
| Stack | -0.90 | External closing pair is T 612-A 1364 |
| Stack | -2.10 | External closing pair is T 613-A 1363 |
| Stack | -3.40 | External closing pair is G 614-C 1362 |
| Stack | -3.30 | External closing pair is C 615-G 1361 |
| Helix | -11.10 | 6 base pairs. |
| Multi-loop | -0.30 | External closing pair is C 616-G 1360 28 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1334 |
| Stack | -2.20 | External closing pair is G 1303-C 1333 |
| Stack | -1.30 | External closing pair is T 1304-A 1332 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 1305-T 1331 |
| Stack | -1.30 | External closing pair is T 1306-A 1325 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 0.60 | External closing pair is A 1307-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 618-C 1299 |
| Stack | -0.90 | External closing pair is T 619-A 1298 |
| Stack | -0.90 | External closing pair is T 620-A 1297 |
| Stack | -1.30 | External closing pair is T 621-A 1296 |
| Helix | -5.30 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 622-T 1295 19 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1277-T 1287 |
| Stack | -2.50 | External closing pair is G 1278-C 1286 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 1279-G 1285 |
| Stack | -1.30 | External closing pair is G 625-T 1266 |
| Stack | -2.20 | External closing pair is A 626-T 1265 |
| Stack | -2.10 | External closing pair is C 627-G 1264 |
| Stack | -1.10 | External closing pair is A 628-T 1263 |
| Stack | -1.00 | External closing pair is T 629-A 1262 |
| Stack | -1.30 | External closing pair is G 630-T 1261 |
| Stack | -0.60 | External closing pair is A 631-T 1260 |
| Stack | -2.10 | External closing pair is G 632-T 1259 |
| Helix | -11.70 | 9 base pairs. |
| Interior loop | 3.40 | External closing pair is G 633-C 1258 |
| Stack | -1.10 | External closing pair is A 637-T 1253 |
| Stack | -2.40 | External closing pair is T 638-A 1252 |
| Stack | -1.40 | External closing pair is C 639-G 1251 |
| Stack | -2.10 | External closing pair is G 640-T 1250 |
| Stack | -2.40 | External closing pair is G 641-C 1249 |
| Helix | -9.40 | 6 base pairs. |
| Interior loop | 2.10 | External closing pair is A 642-T 1248 |
| Stack | -2.10 | External closing pair is C 644-G 1245 |
| Stack | -0.90 | External closing pair is A 645-T 1244 |
| Stack | -0.90 | External closing pair is A 646-T 1243 |
| Stack | -0.60 | External closing pair is A 647-T 1242 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | 1.40 | External closing pair is G 648-T 1241 |
| Interior loop | -2.90 | External closing pair is T 651-G 1238 |
| Stack | -1.40 | External closing pair is G 654-T 1235 |
| Helix | -1.40 | 2 base pairs. |
| Interior loop | 4.50 | External closing pair is T 655-A 1234 |
| Stack | -3.40 | External closing pair is G 659-C 1226 |
| Stack | -2.10 | External closing pair is C 660-G 1225 |
| Stack | -0.90 | External closing pair is T 661-A 1224 |
| Stack | -0.90 | External closing pair is T 662-A 1223 |
| Stack | -0.90 | External closing pair is T 663-A 1222 |
| Stack | -2.40 | External closing pair is T 664-A 1221 |
| Helix | -10.60 | 7 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 665-G 1220 4 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1178-G 1218 |
| Stack | -2.10 | External closing pair is A 1179-T 1217 |
| Stack | -2.40 | External closing pair is G 1180-C 1216 |
| Stack | -0.90 | External closing pair is A 1181-T 1215 |
| Helix | -7.50 | 5 base pairs. |
| Bulge loop | 4.90 | External closing pair is A 1182-T 1214 |
| Stack | -3.30 | External closing pair is C 1183-G 1207 |
| Stack | -2.10 | External closing pair is C 1184-G 1206 |
| Stack | -2.20 | External closing pair is A 1185-T 1205 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 1186-G 1204 |
| Stack | -3.40 | External closing pair is G 667-C 1175 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 0.90 | External closing pair is C 668-G 1174 |
| Stack | -0.90 | External closing pair is T 671-A 1171 |
| Stack | -0.90 | External closing pair is T 672-A 1170 |
| Stack | -2.40 | External closing pair is T 673-A 1169 |
| Stack | -2.10 | External closing pair is C 674-G 1168 |
| Helix | -6.30 | 5 base pairs. |
| Interior loop | 0.10 | External closing pair is A 675-T 1167 |
| Stack | -2.10 | External closing pair is C 678-G 1164 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 4.50 | External closing pair is T 679-A 1163 4 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 692-A 1160 |
| Stack | -1.10 | External closing pair is A 693-T 1159 |
| Stack | -1.30 | External closing pair is T 694-A 1158 |
| Stack | -1.10 | External closing pair is A 695-T 1157 |
| Helix | -4.80 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 696-A 1156 |
| Stack | -1.30 | External closing pair is T 698-A 1153 |
| Stack | -1.10 | External closing pair is A 699-T 1152 |
| Stack | -2.40 | External closing pair is T 700-A 1151 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 701-G 1150 |
| Stack | -3.40 | External closing pair is G 702-C 1148 |
| Stack | -2.10 | External closing pair is C 703-G 1147 |
| Stack | -2.10 | External closing pair is T 704-A 1146 |
| Stack | -2.20 | External closing pair is G 705-C 1145 |
| Stack | -1.30 | External closing pair is T 706-A 1144 |
| Helix | -11.10 | 6 base pairs. |
| Interior loop | 6.10 | External closing pair is A 707-T 1143 |
| Stack | -2.20 | External closing pair is A 709-T 1136 |
| Stack | -2.10 | External closing pair is C 710-G 1135 |
| Stack | -0.90 | External closing pair is A 711-T 1134 |
| Stack | -2.20 | External closing pair is A 712-T 1133 |
| Stack | -2.10 | External closing pair is C 713-G 1132 |
| Stack | -2.40 | External closing pair is T 714-A 1131 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | 2.50 | External closing pair is C 715-G 1130 |
| Stack | -1.30 | External closing pair is T 720-A 1124 |
| Stack | -0.60 | External closing pair is T 721-G 1123 |
| Helix | -1.90 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 722-A 1122 |
| Interior loop | -2.90 | External closing pair is T 724-G 1120 |
| Stack | -0.90 | External closing pair is A 727-T 1117 |
| Stack | -2.10 | External closing pair is A 728-T 1116 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | -0.60 | External closing pair is G 729-C 1115 32 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -3.30 | External closing pair is C 733-G 1075 |
| Stack | -1.40 | External closing pair is C 734-G 1074 |
| Stack | -2.10 | External closing pair is G 735-T 1073 |
| Stack | -3.40 | External closing pair is G 736-C 1072 |
| Stack | -2.10 | External closing pair is C 737-G 1071 |
| Stack | -0.90 | External closing pair is T 738-A 1070 |
| Stack | -2.40 | External closing pair is T 739-A 1069 |
| Helix | -15.60 | 8 base pairs. |
| Interior loop | 1.10 | External closing pair is C 740-G 1068 |
| Stack | -0.90 | External closing pair is T 742-A 1066 |
| Helix | -0.90 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 743-A 1065 |
| Stack | -1.30 | External closing pair is T 746-A 1062 |
| Stack | -0.90 | External closing pair is A 747-T 1061 |
| Stack | -0.60 | External closing pair is A 748-T 1060 |
| Helix | -2.80 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is G 749-T 1059 |
| Stack | -2.10 | External closing pair is T 752-A 1057 |
| Stack | -3.30 | External closing pair is G 753-C 1056 |
| Stack | -2.50 | External closing pair is G 754-C 1055 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 755-G 1054 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -2.10 | External closing pair is T 759-A 768 |
| Stack | -3.30 | External closing pair is G 760-C 767 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 761-C 766 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -1.40 | External closing pair is G 3-T 555 |
| Stack | -2.40 | External closing pair is T 4-A 554 |
| Stack | -2.10 | External closing pair is C 5-G 553 |
| Helix | -5.90 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 6-T 552 |
| Stack | -0.90 | External closing pair is T 8-A 549 |
| Stack | -2.40 | External closing pair is T 9-A 548 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 0.50 | External closing pair is C 10-G 547 |
| Stack | -2.10 | External closing pair is C 12-G 545 |
| Stack | -1.30 | External closing pair is T 13-A 544 |
| Helix | -3.40 | 3 base pairs. |
| Multi-loop | 2.00 | External closing pair is T 14-G 543 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 208-A 539 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
| Stack | -2.10 | External closing pair is C 28-G 205 |
| Stack | -1.10 | External closing pair is A 29-T 204 |
| Stack | -1.30 | External closing pair is T 30-A 203 |
| Stack | -0.50 | External closing pair is T 31-G 202 |
| Stack | -1.40 | External closing pair is T 32-G 201 |
| Stack | -3.30 | External closing pair is G 33-C 200 |
| Stack | -2.50 | External closing pair is G 34-C 199 |
| Helix | -12.20 | 8 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 35-G 198 43 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 90-A 183 |
| Stack | -2.20 | External closing pair is G 91-C 182 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 2.70 | External closing pair is T 92-A 181 |
| Stack | -1.00 | External closing pair is T 96-A 176 |
| Stack | -2.50 | External closing pair is G 97-T 175 |
| Stack | -2.10 | External closing pair is C 98-G 174 |
| Stack | -2.10 | External closing pair is T 99-A 173 |
| Helix | -7.70 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 100-C 172 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 41
seq.txt
ΔG = -804.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 46-C 3102 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 82-G 3087 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 2.20 | External closing pair is A 83-T 3086 |
| Stack | -2.40 | External closing pair is T 86-A 3083 |
| Stack | -2.10 | External closing pair is C 87-G 3082 |
| Stack | -1.10 | External closing pair is A 88-T 3081 |
| Stack | -0.90 | External closing pair is T 89-A 3080 |
| Stack | -2.10 | External closing pair is T 90-A 3079 |
| Helix | -8.60 | 6 base pairs. |
| Bulge loop | 3.70 | External closing pair is G 91-C 3078 |
| Stack | -0.90 | External closing pair is T 92-A 3074 |
| Stack | -2.10 | External closing pair is T 93-A 3073 |
| Stack | -2.20 | External closing pair is G 94-C 3072 |
| Stack | -0.90 | External closing pair is T 95-A 3071 |
| Helix | -6.10 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 96-A 3070 |
| Stack | -2.10 | External closing pair is T 99-A 3069 |
| Stack | -2.20 | External closing pair is G 100-C 3068 |
| Stack | -0.90 | External closing pair is T 101-A 3067 |
| Stack | -0.90 | External closing pair is T 102-A 3066 |
| Stack | -0.90 | External closing pair is T 103-A 3065 |
| Stack | -1.30 | External closing pair is T 104-A 3064 |
| Stack | -1.40 | External closing pair is A 105-T 3063 |
| Helix | -9.70 | 8 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 106-G 3062 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 3024-A 3058 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.90 | External closing pair is G 3025-C 3057 |
| Stack | -2.10 | External closing pair is G 3028-T 3054 |
| Stack | -2.20 | External closing pair is G 3029-C 3053 |
| Stack | -2.40 | External closing pair is T 3030-A 3052 |
| Stack | -2.10 | External closing pair is C 3031-G 3051 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 2.20 | External closing pair is A 3032-T 3050 |
| Stack | -2.10 | External closing pair is T 3035-A 3047 |
| Stack | -3.30 | External closing pair is G 3036-C 3046 |
| Stack | -2.50 | External closing pair is G 3037-C 3045 |
| Helix | -7.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 3038-G 3044 |
| Stack | -1.30 | External closing pair is G 108-T 3021 |
| Stack | -2.10 | External closing pair is A 109-T 3020 |
| Stack | -2.20 | External closing pair is G 110-C 3019 |
| Stack | -2.10 | External closing pair is T 111-A 3018 |
| Stack | -3.40 | External closing pair is G 112-C 3017 |
| Helix | -11.10 | 6 base pairs. |
| Multi-loop | 3.20 | External closing pair is C 113-G 3016 20 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 461-C 3015 |
| Stack | -2.40 | External closing pair is G 462-C 3014 |
| Stack | -2.10 | External closing pair is A 463-T 3013 |
| Helix | -7.80 | 4 base pairs. |
| Interior loop | 0.90 | External closing pair is G 464-C 3012 |
| Stack | -2.40 | External closing pair is G 468-C 3007 |
| Stack | -2.10 | External closing pair is A 469-T 3006 |
| Stack | -2.40 | External closing pair is G 470-C 3005 |
| Helix | -6.90 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is A 471-T 3004 |
| Stack | -2.10 | External closing pair is C 474-G 2998 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 475-T 2997 |
| Stack | -2.10 | External closing pair is C 477-G 2995 |
| Stack | -2.10 | External closing pair is A 478-T 2994 |
| Stack | -3.40 | External closing pair is G 479-C 2993 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 4.70 | External closing pair is C 480-G 2992 |
| Stack | -2.10 | External closing pair is G 492-T 2989 |
| Stack | -2.40 | External closing pair is G 493-C 2988 |
| Stack | -2.20 | External closing pair is A 494-T 2987 |
| Helix | -6.70 | 4 base pairs. |
| Interior loop | 1.30 | External closing pair is C 495-G 2986 |
| Stack | -3.40 | External closing pair is G 498-C 2984 |
| Stack | -2.10 | External closing pair is C 499-G 2983 |
| Stack | -1.40 | External closing pair is A 500-T 2982 |
| Stack | -1.00 | External closing pair is T 501-G 2981 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 502-T 2980 4 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 525-C 2978 |
| Helix | -3.40 | 2 base pairs. |
| Multi-loop | 1.40 | External closing pair is C 526-G 2977 22 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 577-G 2969 |
| Stack | -1.30 | External closing pair is T 578-A 2968 |
| Stack | -2.10 | External closing pair is A 579-T 2967 |
| Stack | -3.40 | External closing pair is G 580-C 2966 |
| Stack | -2.10 | External closing pair is C 581-G 2965 |
| Stack | -1.00 | External closing pair is T 582-A 2964 |
| Helix | -12.00 | 7 base pairs. |
| Bulge loop | 7.00 | External closing pair is G 583-T 2963 |
| Stack | -1.40 | External closing pair is G 611-T 2962 |
| Stack | -0.90 | External closing pair is T 612-A 2961 |
| Stack | -2.10 | External closing pair is T 613-A 2960 |
| Stack | -3.40 | External closing pair is G 614-C 2959 |
| Stack | -3.30 | External closing pair is C 615-G 2958 |
| Helix | -11.10 | 6 base pairs. |
| Multi-loop | 2.00 | External closing pair is C 616-G 2957 6 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 2946-T 2955 |
| Stack | -3.40 | External closing pair is G 2947-C 2954 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2948-G 2953 |
| Stack | -2.20 | External closing pair is G 618-C 2941 |
| Stack | -0.90 | External closing pair is T 619-A 2940 |
| Stack | -1.30 | External closing pair is T 620-A 2939 |
| Stack | -1.00 | External closing pair is T 621-G 2938 |
| Helix | -5.40 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 622-T 2937 |
| Stack | -2.10 | External closing pair is T 624-A 2935 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 2.70 | External closing pair is G 625-C 2934 |
| Stack | -2.10 | External closing pair is T 629-A 2930 |
| Stack | -2.40 | External closing pair is G 630-C 2929 |
| Stack | -2.10 | External closing pair is A 631-T 2928 |
| Stack | -3.30 | External closing pair is G 632-C 2927 |
| Stack | -2.40 | External closing pair is G 633-C 2926 |
| Helix | -12.30 | 6 base pairs. |
| Multi-loop | -0.80 | External closing pair is A 634-T 2925 16 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 641-C 2730 |
| Stack | -1.40 | External closing pair is A 642-T 2729 |
| Stack | -1.50 | External closing pair is T 643-G 2728 |
| Stack | -2.10 | External closing pair is C 644-G 2727 |
| Stack | -0.90 | External closing pair is A 645-T 2726 |
| Stack | -0.90 | External closing pair is A 646-T 2725 |
| Helix | -9.20 | 7 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 647-T 2724 8 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 680-G 2719 |
| Stack | -2.10 | External closing pair is T 681-A 2718 |
| Stack | -3.40 | External closing pair is G 682-C 2717 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is C 683-G 2716 |
| Stack | -2.10 | External closing pair is T 685-A 2714 |
| Stack | -3.40 | External closing pair is G 686-C 2713 |
| Stack | -2.40 | External closing pair is C 687-G 2712 |
| Stack | -3.40 | External closing pair is G 688-C 2711 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 689-G 2710 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -1.30 | External closing pair is T 692-A 1160 |
| Stack | -1.10 | External closing pair is A 693-T 1159 |
| Stack | -1.30 | External closing pair is T 694-A 1158 |
| Stack | -1.10 | External closing pair is A 695-T 1157 |
| Helix | -4.80 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 696-A 1156 |
| Stack | -1.30 | External closing pair is T 698-A 1153 |
| Stack | -1.10 | External closing pair is A 699-T 1152 |
| Stack | -2.40 | External closing pair is T 700-A 1151 |
| Helix | -4.80 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 701-G 1150 |
| Stack | -3.40 | External closing pair is G 702-C 1148 |
| Stack | -2.10 | External closing pair is C 703-G 1147 |
| Stack | -2.10 | External closing pair is T 704-A 1146 |
| Stack | -2.20 | External closing pair is G 705-C 1145 |
| Stack | -1.30 | External closing pair is T 706-A 1144 |
| Helix | -11.10 | 6 base pairs. |
| Interior loop | 6.10 | External closing pair is A 707-T 1143 |
| Stack | -2.20 | External closing pair is A 709-T 1136 |
| Stack | -2.10 | External closing pair is C 710-G 1135 |
| Stack | -0.90 | External closing pair is A 711-T 1134 |
| Stack | -2.20 | External closing pair is A 712-T 1133 |
| Stack | -2.10 | External closing pair is C 713-G 1132 |
| Stack | -2.40 | External closing pair is T 714-A 1131 |
| Helix | -11.90 | 7 base pairs. |
| Interior loop | 2.50 | External closing pair is C 715-G 1130 |
| Stack | -1.30 | External closing pair is T 720-A 1124 |
| Stack | -0.60 | External closing pair is T 721-G 1123 |
| Helix | -1.90 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 722-A 1122 |
| Interior loop | -2.90 | External closing pair is T 724-G 1120 |
| Stack | -0.90 | External closing pair is A 727-T 1117 |
| Stack | -2.10 | External closing pair is A 728-T 1116 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | -0.60 | External closing pair is G 729-C 1115 32 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -3.30 | External closing pair is C 733-G 1075 |
| Stack | -1.40 | External closing pair is C 734-G 1074 |
| Stack | -2.10 | External closing pair is G 735-T 1073 |
| Stack | -3.40 | External closing pair is G 736-C 1072 |
| Stack | -2.10 | External closing pair is C 737-G 1071 |
| Stack | -0.90 | External closing pair is T 738-A 1070 |
| Stack | -2.40 | External closing pair is T 739-A 1069 |
| Helix | -15.60 | 8 base pairs. |
| Interior loop | 1.10 | External closing pair is C 740-G 1068 |
| Stack | -0.90 | External closing pair is T 742-A 1066 |
| Helix | -0.90 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 743-A 1065 |
| Stack | -1.30 | External closing pair is T 746-A 1062 |
| Stack | -0.90 | External closing pair is A 747-T 1061 |
| Stack | -0.60 | External closing pair is A 748-T 1060 |
| Helix | -2.80 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is G 749-T 1059 |
| Stack | -2.10 | External closing pair is T 752-A 1057 |
| Stack | -3.30 | External closing pair is G 753-C 1056 |
| Stack | -2.50 | External closing pair is G 754-C 1055 |
| Helix | -7.90 | 4 base pairs. |
| Multi-loop | 3.00 | External closing pair is T 755-G 1054 19 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 1043 |
| Stack | -1.30 | External closing pair is T 776-A 1042 |
| Stack | -2.10 | External closing pair is A 777-T 1041 |
| Stack | -2.50 | External closing pair is G 778-C 1040 |
| Stack | -1.00 | External closing pair is T 779-G 1039 |
| Helix | -9.10 | 6 base pairs. |
| Interior loop | 1.50 | External closing pair is A 780-T 1038 |
| Stack | -1.00 | External closing pair is T 783-G 1035 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 0.80 | External closing pair is A 784-T 1034 |
| Stack | -2.10 | External closing pair is G 787-T 1031 |
| Stack | -3.40 | External closing pair is G 788-C 1030 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 789-G 1029 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -2.10 | External closing pair is A 794-T 1016 |
| Stack | -3.40 | External closing pair is G 795-C 1015 |
| Stack | -2.10 | External closing pair is C 796-G 1014 |
| Stack | -1.10 | External closing pair is A 797-T 1013 |
| Stack | -1.30 | External closing pair is T 798-A 1012 |
| Stack | -0.90 | External closing pair is A 799-T 1011 |
| Stack | -0.90 | External closing pair is A 800-T 1010 |
| Helix | -11.80 | 8 base pairs. |
| Interior loop | 1.90 | External closing pair is A 801-T 1009 |
| Stack | -2.40 | External closing pair is G 806-C 1004 |
| Stack | -2.20 | External closing pair is A 807-T 1003 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 808-G 1002 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 836-T 996 |
| Stack | -2.10 | External closing pair is C 837-G 995 |
| Stack | -2.10 | External closing pair is A 838-T 994 |
| Stack | -2.40 | External closing pair is G 839-C 993 |
| Stack | -0.90 | External closing pair is A 840-T 992 |
| Helix | -9.70 | 6 base pairs. |
| Bulge loop | 5.00 | External closing pair is A 841-T 991 |
| Stack | -1.10 | External closing pair is A 847-T 990 |
| Stack | -0.90 | External closing pair is T 848-A 989 |
| Stack | -2.10 | External closing pair is T 849-A 988 |
| Stack | -2.40 | External closing pair is G 850-C 987 |
| Stack | -2.20 | External closing pair is A 851-T 986 |
| Helix | -8.70 | 6 base pairs. |
| Multi-loop | 3.60 | External closing pair is C 852-G 985 11 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 911-G 984 |
| Stack | -0.90 | External closing pair is A 912-T 983 |
| Stack | -1.10 | External closing pair is A 913-T 982 |
| Stack | -2.40 | External closing pair is T 914-A 981 |
| Stack | -3.30 | External closing pair is C 915-G 980 |
| Stack | -2.40 | External closing pair is C 916-G 979 |
| Helix | -11.10 | 7 base pairs. |
| Interior loop | 0.50 | External closing pair is G 917-C 978 |
| Stack | -2.40 | External closing pair is G 919-C 976 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 4.70 | External closing pair is A 920-T 975 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -2.10 | External closing pair is G 864-T 910 |
| Stack | -2.20 | External closing pair is G 865-C 909 |
| Stack | -1.30 | External closing pair is T 866-A 908 |
| Helix | -5.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 867-T 907 |
| Stack | -3.40 | External closing pair is G 869-C 905 |
| Stack | -2.10 | External closing pair is C 870-G 904 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.50 | External closing pair is A 871-T 903 |
| Stack | -0.90 | External closing pair is T 878-A 900 |
| Stack | -1.30 | External closing pair is T 879-A 899 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 880-G 898 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 810-A 827 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | -1.60 | External closing pair is G 811-C 826 |
| Stack | -3.40 | External closing pair is G 814-C 823 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 815-G 822 |
| Stack | -2.10 | External closing pair is T 759-A 768 |
| Stack | -3.30 | External closing pair is G 760-C 767 |
| Helix | -5.40 | 3 base pairs. |
| Hairpin loop | 4.50 | Closing pair is G 761-C 766 |
| Stack | -0.90 | External closing pair is T 650-A 677 |
| Stack | -0.90 | External closing pair is T 651-A 676 |
| Stack | -2.10 | External closing pair is T 652-A 675 |
| Stack | -1.50 | External closing pair is G 653-C 674 |
| Helix | -5.40 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 654-T 673 |
| Stack | -2.10 | External closing pair is A 658-T 669 |
| Stack | -3.40 | External closing pair is G 659-C 668 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 660-G 667 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -2.40 | External closing pair is T 127-A 453 |
| Stack | -3.30 | External closing pair is C 128-G 452 |
| Stack | -2.40 | External closing pair is C 129-G 451 |
| Stack | -2.20 | External closing pair is G 130-C 450 |
| Helix | -10.30 | 5 base pairs. |
| Bulge loop | 4.50 | External closing pair is T 131-A 449 |
| Stack | -2.40 | External closing pair is G 132-C 443 |
| Stack | -2.20 | External closing pair is A 133-T 442 |
| Stack | -2.10 | External closing pair is C 134-G 441 |
| Stack | -2.20 | External closing pair is A 135-T 440 |
| Helix | -8.90 | 5 base pairs. |
| Multi-loop | 0.50 | External closing pair is C 136-G 439 29 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 353-G 423 |
| Stack | -0.90 | External closing pair is T 354-A 422 |
| Stack | -0.90 | External closing pair is T 355-A 421 |
| Stack | -2.10 | External closing pair is T 356-A 420 |
| Helix | -6.00 | 5 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 357-C 419 |
| Bulge loop | 0.50 | External closing pair is C 358-G 417 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -1.50 | External closing pair is T 139-G 340 |
| Stack | -2.10 | External closing pair is C 140-G 339 |
| Stack | -0.90 | External closing pair is T 141-A 338 |
| Stack | -1.30 | External closing pair is T 142-A 337 |
| Stack | -2.20 | External closing pair is A 143-T 336 |
| Helix | -8.00 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is C 144-G 335 |
| Stack | -0.90 | External closing pair is A 148-T 328 |
| Stack | -2.20 | External closing pair is A 149-T 327 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is C 150-G 326 |
| Stack | -1.10 | External closing pair is A 153-T 323 |
| Stack | -2.10 | External closing pair is T 154-A 322 |
| Stack | -3.30 | External closing pair is G 155-C 321 |
| Helix | -6.50 | 4 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 156-C 320 17 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 286-C 317 |
| Stack | -1.40 | External closing pair is A 287-T 316 |
| Stack | -1.00 | External closing pair is T 288-G 315 |
| Helix | -4.80 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is A 289-T 314 |
| Stack | -1.30 | External closing pair is T 292-A 311 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 293-T 310 |
| Stack | -2.10 | External closing pair is A 158-T 271 |
| Stack | -3.40 | External closing pair is G 159-C 270 |
| Stack | -2.10 | External closing pair is C 160-G 269 |
| Stack | -2.10 | External closing pair is T 161-A 268 |
| Helix | -9.70 | 5 base pairs. |
| Bulge loop | 3.70 | External closing pair is G 162-C 267 |
| Stack | -1.30 | External closing pair is G 163-T 263 |
| Stack | -2.20 | External closing pair is A 164-T 262 |
| Stack | -2.10 | External closing pair is C 165-G 261 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 166-A 260 |
| Stack | -2.10 | External closing pair is C 167-G 258 |
| Stack | -1.00 | External closing pair is T 168-G 257 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 169-T 256 |
| Stack | -1.10 | External closing pair is A 170-T 252 |
| Stack | -2.40 | External closing pair is T 171-A 251 |
| Stack | -2.10 | External closing pair is C 172-G 250 |
| Stack | -2.10 | External closing pair is A 173-T 249 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.20 | External closing pair is G 174-C 248 18 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 232-G 246 |
| Stack | -1.40 | External closing pair is A 233-T 245 |
| Stack | -1.00 | External closing pair is T 234-G 244 |
| Stack | -2.10 | External closing pair is A 235-T 243 |
| Stack | -3.30 | External closing pair is G 236-C 242 |
| Helix | -8.80 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 237-C 241 |
| Stack | -0.90 | External closing pair is T 177-A 216 |
| Stack | -2.40 | External closing pair is T 178-A 215 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 179-G 214 |
| Stack | -2.20 | External closing pair is A 181-T 211 |
| Stack | -2.10 | External closing pair is C 182-G 210 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 183-T 209 |
| Stack | -2.20 | External closing pair is A 185-T 208 |
| Stack | -2.10 | External closing pair is C 186-G 207 |
| Stack | -1.30 | External closing pair is T 187-A 206 |
| Stack | -1.00 | External closing pair is T 188-G 205 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 4.00 | External closing pair is A 189-T 204 |
| Stack | -3.40 | External closing pair is G 191-C 199 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 192-G 198 |
| Stack | -2.10 | External closing pair is C 47-G 71 |
| Stack | -1.30 | External closing pair is T 48-A 70 |
| Stack | -1.40 | External closing pair is T 49-G 69 |
| Stack | -3.40 | External closing pair is G 50-C 68 |
| Stack | -2.10 | External closing pair is C 51-G 67 |
| Stack | -2.20 | External closing pair is A 52-T 66 |
| Stack | -2.10 | External closing pair is C 53-G 65 |
| Stack | -1.00 | External closing pair is T 54-A 64 |
| Helix | -15.60 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 55-T 63 |
Structure 42
seq.txt
ΔG = -803.60
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 211-A 1912 61 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1844-G 1894 |
| Stack | -1.00 | External closing pair is T 1845-A 1893 |
| Stack | -1.30 | External closing pair is G 1846-T 1892 |
| Stack | -2.10 | External closing pair is A 1847-T 1891 |
| Stack | -3.30 | External closing pair is G 1848-C 1890 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 1.20 | External closing pair is G 1849-C 1889 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is C 1853-G 1864 |
| Stack | -2.40 | External closing pair is G 1854-C 1863 |
| Helix | -4.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 1855-T 1862 |
| Stack | -2.10 | External closing pair is C 228-G 1815 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 229-A 1814 |
| Stack | -2.10 | External closing pair is C 231-G 1813 |
| Stack | -1.00 | External closing pair is T 232-G 1812 |
| Stack | -1.10 | External closing pair is A 233-T 1811 |
| Stack | -1.30 | External closing pair is T 234-A 1810 |
| Stack | -0.60 | External closing pair is A 235-T 1809 |
| Stack | -2.10 | External closing pair is G 236-T 1808 |
| Stack | -2.20 | External closing pair is G 237-C 1807 |
| Helix | -10.40 | 8 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 238-A 1806 |
| Stack | -2.40 | External closing pair is T 240-A 1805 |
| Stack | -3.30 | External closing pair is C 241-G 1804 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.70 | External closing pair is C 242-G 1803 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1116-A 1796 |
| Stack | -1.30 | External closing pair is T 1117-A 1795 |
| Stack | -1.40 | External closing pair is T 1118-G 1794 |
| Stack | -1.50 | External closing pair is G 1119-C 1793 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is G 1120-T 1792 |
| Stack | -0.60 | External closing pair is A 1122-T 1790 |
| Stack | -1.30 | External closing pair is G 1123-T 1789 |
| Stack | -2.10 | External closing pair is A 1124-T 1788 |
| Stack | -3.30 | External closing pair is G 1125-C 1787 |
| Stack | -2.40 | External closing pair is G 1126-C 1786 |
| Stack | -2.20 | External closing pair is A 1127-T 1785 |
| Stack | -2.40 | External closing pair is C 1128-G 1784 |
| Stack | -3.30 | External closing pair is G 1129-C 1783 |
| Stack | -2.40 | External closing pair is G 1130-C 1782 |
| Helix | -20.00 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 1131-T 1781 4 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1206-C 1778 |
| Stack | -3.40 | External closing pair is G 1207-C 1777 |
| Stack | -2.10 | External closing pair is C 1208-G 1776 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is T 1209-A 1775 |
| Stack | -1.30 | External closing pair is T 1214-A 1772 |
| Stack | -1.50 | External closing pair is T 1215-G 1771 |
| Stack | -2.10 | External closing pair is C 1216-G 1770 |
| Stack | -2.10 | External closing pair is T 1217-A 1769 |
| Stack | -3.30 | External closing pair is G 1218-C 1768 |
| Stack | -3.30 | External closing pair is G 1219-C 1767 |
| Stack | -2.40 | External closing pair is G 1220-C 1766 |
| Stack | -0.90 | External closing pair is A 1221-T 1765 |
| Helix | -16.90 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is A 1222-T 1764 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1762 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1752-G 1761 |
| Stack | -3.40 | External closing pair is G 1225-C 1749 |
| Stack | -2.10 | External closing pair is C 1226-G 1748 |
| Stack | -1.10 | External closing pair is A 1227-T 1747 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.60 | External closing pair is T 1228-A 1746 |
| Stack | -2.20 | External closing pair is G 1231-C 1743 |
| Stack | -0.90 | External closing pair is T 1232-A 1742 |
| Stack | -1.30 | External closing pair is T 1233-A 1741 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.50 | External closing pair is A 1234-T 1740 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1723-A 1738 |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -1.40 | External closing pair is G 1238-T 1713 |
| Stack | -2.40 | External closing pair is T 1239-A 1712 |
| Stack | -2.10 | External closing pair is C 1240-G 1711 |
| Stack | -0.90 | External closing pair is T 1241-A 1710 |
| Stack | -0.90 | External closing pair is T 1242-A 1709 |
| Stack | -1.30 | External closing pair is T 1243-A 1708 |
| Stack | -1.40 | External closing pair is T 1244-G 1707 |
| Stack | -3.40 | External closing pair is G 1245-C 1706 |
| Helix | -13.80 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 1246-G 1705 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1292-G 1701 |
| Stack | -2.20 | External closing pair is A 1293-T 1700 |
| Stack | -2.10 | External closing pair is C 1294-G 1699 |
| Helix | -5.30 | 4 base pairs. |
| Multi-loop | 1.80 | External closing pair is T 1295-A 1698 18 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.40 | External closing pair is T 1248-A 1274 |
| Stack | -2.10 | External closing pair is C 1249-G 1273 |
| Stack | -2.10 | External closing pair is T 1250-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1251-C 1271 |
| Stack | -0.90 | External closing pair is A 1255-T 1266 |
| Stack | -2.20 | External closing pair is A 1256-T 1265 |
| Helix | -3.10 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1257-G 1264 |
| Stack | -2.20 | External closing pair is G 1132-C 1203 |
| Stack | -0.90 | External closing pair is T 1133-A 1202 |
| Stack | -1.00 | External closing pair is T 1134-A 1201 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1135-T 1200 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -3.40 | External closing pair is G 1147-C 1175 |
| Stack | -2.10 | External closing pair is C 1148-G 1174 |
| Stack | -2.10 | External closing pair is A 1149-T 1173 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is G 1150-C 1172 |
| Stack | -1.30 | External closing pair is T 1154-A 1169 |
| Stack | -1.00 | External closing pair is T 1155-G 1168 |
| Stack | -1.10 | External closing pair is A 1156-T 1167 |
| Helix | -3.40 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 1157-A 1166 |
| Stack | -2.10 | External closing pair is T 245-A 1112 |
| Stack | -2.20 | External closing pair is G 246-C 1111 |
| Stack | -2.40 | External closing pair is T 247-A 1110 |
| Stack | -2.10 | External closing pair is C 248-G 1109 |
| Stack | -2.10 | External closing pair is T 249-A 1108 |
| Stack | -2.40 | External closing pair is G 250-C 1107 |
| Stack | -1.10 | External closing pair is A 251-T 1106 |
| Helix | -14.40 | 8 base pairs. |
| Multi-loop | 3.50 | External closing pair is T 252-A 1105 6 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 978-G 1102 |
| Stack | -3.30 | External closing pair is G 979-C 1101 |
| Helix | -5.70 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 980-C 1100 |
| Stack | -0.90 | External closing pair is T 982-A 1099 |
| Stack | -2.10 | External closing pair is T 983-A 1098 |
| Stack | -1.50 | External closing pair is G 984-C 1097 |
| Stack | -1.40 | External closing pair is G 985-T 1096 |
| Stack | -2.40 | External closing pair is T 986-A 1095 |
| Helix | -8.30 | 6 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 987-G 1094 30 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1015-G 1075 |
| Stack | -1.00 | External closing pair is T 1016-G 1074 |
| Stack | -2.10 | External closing pair is A 1017-T 1073 |
| Stack | -2.50 | External closing pair is G 1018-C 1072 |
| Stack | -0.60 | External closing pair is T 1019-G 1071 |
| Stack | -0.90 | External closing pair is T 1020-A 1070 |
| Stack | -1.30 | External closing pair is T 1021-A 1069 |
| Helix | -10.50 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1022-G 1068 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1039-C 1055 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is C 1040-G 1054 |
| Stack | -2.40 | External closing pair is G 1024-C 1037 |
| Stack | -2.20 | External closing pair is A 1025-T 1036 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1026-G 1035 |
| Stack | -2.10 | External closing pair is T 994-A 1008 |
| Stack | -2.20 | External closing pair is G 995-C 1007 |
| Stack | -1.30 | External closing pair is T 996-A 1006 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is A 997-T 1005 |
| Stack | -3.30 | External closing pair is G 257-C 977 |
| Stack | -2.40 | External closing pair is G 258-C 976 |
| Stack | -0.90 | External closing pair is A 259-T 975 |
| Stack | -2.10 | External closing pair is A 260-T 974 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 261-C 973 |
| Stack | -2.40 | External closing pair is T 266-A 969 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 267-G 968 |
| Stack | -2.10 | External closing pair is A 268-T 966 |
| Stack | -3.40 | External closing pair is G 269-C 965 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is C 270-G 964 18 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Stack | -0.90 | External closing pair is A 275-T 926 |
| Stack | -2.10 | External closing pair is A 276-T 925 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is G 277-C 924 |
| Stack | -2.10 | External closing pair is A 279-T 922 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 0.40 | External closing pair is G 280-C 921 |
| Stack | -2.40 | External closing pair is C 282-G 919 |
| Stack | -3.40 | External closing pair is G 283-C 918 |
| Helix | -5.80 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 284-G 917 |
| Stack | -2.40 | External closing pair is G 286-C 915 |
| Stack | -1.10 | External closing pair is A 287-T 914 |
| Helix | -3.50 | 3 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 288-A 913 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 333-T 911 |
| Stack | -2.10 | External closing pair is A 334-T 910 |
| Stack | -2.20 | External closing pair is G 335-C 909 |
| Stack | -1.30 | External closing pair is T 336-A 908 |
| Helix | -6.50 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 337-T 907 |
| Stack | -3.30 | External closing pair is G 339-C 906 |
| Helix | -3.30 | 2 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 905 |
| Stack | -2.10 | External closing pair is C 342-G 904 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.90 | External closing pair is A 343-T 903 |
| Stack | -0.90 | External closing pair is T 345-A 900 |
| Stack | -2.40 | External closing pair is T 346-A 899 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 347-G 898 |
| Stack | -1.30 | External closing pair is G 351-T 893 |
| Stack | -2.20 | External closing pair is A 352-T 892 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 0.60 | External closing pair is C 353-G 891 |
| Stack | -3.40 | External closing pair is G 357-C 887 |
| Stack | -3.30 | External closing pair is C 358-G 886 |
| Stack | -2.10 | External closing pair is C 359-G 885 |
| Stack | -1.30 | External closing pair is T 360-A 884 |
| Helix | -10.10 | 5 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 361-G 883 21 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 582-A 871 |
| Stack | -3.40 | External closing pair is G 583-C 870 |
| Stack | -2.10 | External closing pair is C 584-G 869 |
| Stack | -0.90 | External closing pair is T 585-A 868 |
| Stack | -1.30 | External closing pair is T 586-A 867 |
| Stack | -2.20 | External closing pair is A 587-T 866 |
| Stack | -3.30 | External closing pair is C 588-G 865 |
| Helix | -15.30 | 8 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 589-G 864 |
| Stack | -0.90 | External closing pair is T 590-A 862 |
| Stack | -1.30 | External closing pair is T 591-A 861 |
| Helix | -2.20 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is A 592-T 860 |
| Stack | -2.40 | External closing pair is T 594-A 856 |
| Stack | -2.10 | External closing pair is C 595-G 855 |
| Stack | -0.90 | External closing pair is T 596-A 854 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 597-A 853 |
| Stack | -1.30 | External closing pair is T 599-A 851 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 600-G 850 |
| Stack | -1.10 | External closing pair is A 602-T 848 |
| Stack | -1.30 | External closing pair is T 603-A 847 |
| Stack | -2.20 | External closing pair is A 604-T 846 |
| Stack | -2.10 | External closing pair is C 605-G 845 |
| Helix | -6.70 | 5 base pairs. |
| Interior loop | 4.10 | External closing pair is T 606-A 844 |
| Stack | -2.40 | External closing pair is T 608-A 840 |
| Stack | -2.10 | External closing pair is C 609-G 839 |
| Stack | -2.10 | External closing pair is T 610-A 838 |
| Stack | -2.20 | External closing pair is G 611-C 837 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.50 | External closing pair is T 612-A 836 25 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 775-C 826 |
| Stack | -1.30 | External closing pair is T 776-A 825 |
| Stack | -2.10 | External closing pair is A 777-T 824 |
| Stack | -2.50 | External closing pair is G 778-C 823 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 3.50 | External closing pair is T 779-G 822 |
| Stack | -3.40 | External closing pair is G 788-C 815 |
| Stack | -2.10 | External closing pair is C 789-G 814 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 790-G 813 |
| Stack | -1.00 | External closing pair is T 792-G 811 |
| Stack | -0.90 | External closing pair is A 793-T 810 |
| Stack | -2.10 | External closing pair is A 794-T 809 |
| Helix | -4.00 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 795-C 808 |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.40 | External closing pair is G 367-C 576 |
| Stack | -1.10 | External closing pair is A 368-T 575 |
| Stack | -2.10 | External closing pair is T 369-A 574 |
| Stack | -2.40 | External closing pair is G 370-C 573 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 371-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.20 | External closing pair is G 373-C 537 |
| Stack | -0.90 | External closing pair is T 374-A 536 |
| Stack | -1.30 | External closing pair is T 375-A 535 |
| Helix | -4.40 | 4 base pairs. |
| Interior loop | 3.60 | External closing pair is A 376-T 534 |
| Stack | -2.10 | External closing pair is T 384-A 527 |
| Stack | -2.50 | External closing pair is G 385-C 526 |
| Stack | -0.60 | External closing pair is T 386-G 525 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 2.30 | External closing pair is T 387-A 524 |
| Stack | -2.20 | External closing pair is A 389-T 521 |
| Stack | -3.30 | External closing pair is C 390-G 520 |
| Stack | -2.10 | External closing pair is C 391-G 519 |
| Stack | -1.10 | External closing pair is A 392-T 518 |
| Stack | -1.30 | External closing pair is T 393-A 517 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 2.30 | External closing pair is A 394-T 516 |
| Stack | -3.30 | External closing pair is G 398-C 511 |
| Stack | -2.20 | External closing pair is G 399-C 510 |
| Stack | -1.30 | External closing pair is T 400-A 509 |
| Helix | -6.80 | 4 base pairs. |
| Interior loop | 1.40 | External closing pair is A 401-T 508 |
| Stack | -1.30 | External closing pair is T 404-A 505 |
| Stack | -1.10 | External closing pair is A 405-T 504 |
| Stack | -0.90 | External closing pair is T 406-A 503 |
| Stack | -1.30 | External closing pair is T 407-A 502 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is A 408-T 501 |
| Stack | -2.50 | External closing pair is G 410-C 499 |
| Helix | -2.50 | 2 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 411-G 498 17 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 451-C 496 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | -0.50 | External closing pair is G 452-C 495 |
| Stack | -1.40 | External closing pair is C 455-G 492 |
| Stack | -1.30 | External closing pair is G 456-T 491 |
| Stack | -0.90 | External closing pair is A 457-T 490 |
| Stack | -0.90 | External closing pair is A 458-T 489 |
| Stack | -1.10 | External closing pair is A 459-T 488 |
| Stack | -1.00 | External closing pair is T 460-A 487 |
| Helix | -6.60 | 7 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 461-T 486 |
| Stack | -0.60 | External closing pair is A 463-T 485 |
| Stack | -1.30 | External closing pair is G 464-T 484 |
| Stack | -1.10 | External closing pair is A 465-T 483 |
| Stack | -0.90 | External closing pair is T 466-A 482 |
| Stack | -2.10 | External closing pair is T 467-A 481 |
| Helix | -6.00 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 468-C 480 |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 43
seq.txt
ΔG = -802.70
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is G 46-C 3102 29 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 2666-T 3099 |
| Stack | -2.10 | External closing pair is C 2667-G 3098 |
| Stack | -0.90 | External closing pair is T 2668-A 3097 |
| Stack | -2.10 | External closing pair is T 2669-A 3096 |
| Stack | -3.30 | External closing pair is G 2670-C 3095 |
| Stack | -2.20 | External closing pair is G 2671-C 3094 |
| Stack | -0.90 | External closing pair is T 2672-A 3093 |
| Stack | -2.10 | External closing pair is T 2673-A 3092 |
| Helix | -15.80 | 9 base pairs. |
| Multi-loop | 3.70 | External closing pair is G 2674-C 3091 3 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2697-A 3090 |
| Stack | -3.30 | External closing pair is G 2698-C 3089 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -4.40 | External closing pair is G 2699-C 3088 |
| Stack | -2.20 | External closing pair is G 2702-C 3085 |
| Stack | -0.90 | External closing pair is T 2703-A 3084 |
| Stack | -1.30 | External closing pair is T 2704-A 3083 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2705-G 3082 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.40 | External closing pair is G 2675-C 2693 |
| Stack | -1.10 | External closing pair is A 2676-T 2692 |
| Stack | -2.40 | External closing pair is T 2677-A 2691 |
| Stack | -3.30 | External closing pair is C 2678-G 2690 |
| Helix | -9.20 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 2679-G 2689 |
| Stack | -3.40 | External closing pair is G 2680-C 2687 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2681-G 2686 |
| Stack | -2.40 | External closing pair is T 1063-A 2648 |
| Stack | -2.10 | External closing pair is C 1064-G 2647 |
| Stack | -0.90 | External closing pair is A 1065-T 2646 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 1066-T 2645 |
| Stack | -1.00 | External closing pair is T 1067-A 2643 |
| Stack | -1.30 | External closing pair is G 1068-T 2642 |
| Stack | -0.90 | External closing pair is A 1069-T 2641 |
| Stack | -2.10 | External closing pair is A 1070-T 2640 |
| Stack | -3.40 | External closing pair is G 1071-C 2639 |
| Helix | -8.70 | 6 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 1072-G 2638 |
| Stack | -3.30 | External closing pair is G 1074-C 2637 |
| Stack | -2.40 | External closing pair is G 1075-C 2636 |
| Stack | -0.90 | External closing pair is A 1076-T 2635 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1077-T 2634 |
| Stack | -2.20 | External closing pair is A 1082-T 2633 |
| Stack | -2.10 | External closing pair is C 1083-G 2632 |
| Stack | -1.10 | External closing pair is A 1084-T 2631 |
| Stack | -2.40 | External closing pair is T 1085-A 2630 |
| Helix | -7.80 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1086-G 2629 |
| Stack | -0.60 | External closing pair is T 1088-G 2627 |
| Stack | -2.40 | External closing pair is T 1089-A 2626 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 1090-G 2625 18 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 2094-A 2622 |
| Stack | -0.50 | External closing pair is G 2095-T 2621 |
| Stack | -1.30 | External closing pair is G 2096-T 2620 |
| Stack | -0.90 | External closing pair is A 2097-T 2619 |
| Stack | -2.20 | External closing pair is A 2098-T 2618 |
| Stack | -2.10 | External closing pair is C 2099-G 2617 |
| Stack | -1.40 | External closing pair is A 2100-T 2616 |
| Helix | -9.40 | 8 base pairs. |
| Interior loop | 4.10 | External closing pair is T 2101-G 2615 |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.40 | External closing pair is G 1094-C 2080 |
| Stack | -1.40 | External closing pair is A 1095-T 2079 |
| Stack | -1.50 | External closing pair is T 1096-G 2078 |
| Stack | -2.10 | External closing pair is C 1097-G 2077 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.70 | External closing pair is A 1098-T 2076 2 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1132-T 2075 |
| Stack | -0.90 | External closing pair is T 1133-A 2074 |
| Stack | -1.00 | External closing pair is T 1134-A 2073 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | -0.50 | External closing pair is G 1135-T 2072 |
| Stack | -3.30 | External closing pair is C 1138-G 2069 |
| Stack | -2.10 | External closing pair is C 1139-G 2068 |
| Stack | -0.90 | External closing pair is A 1140-T 2067 |
| Stack | -2.20 | External closing pair is A 1141-T 2066 |
| Stack | -2.10 | External closing pair is C 1142-G 2065 |
| Helix | -10.60 | 6 base pairs. |
| Multi-loop | 0.20 | External closing pair is T 1143-A 2064 15 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.40 | External closing pair is G 1150-C 2043 |
| Stack | -1.40 | External closing pair is A 1151-T 2042 |
| Stack | -1.00 | External closing pair is T 1152-G 2041 |
| Stack | -1.10 | External closing pair is A 1153-T 2040 |
| Stack | -0.90 | External closing pair is T 1154-A 2039 |
| Helix | -6.80 | 6 base pairs. |
| Multi-loop | 3.40 | External closing pair is T 1155-A 2038 12 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1865-A 2036 |
| Stack | -2.10 | External closing pair is C 1866-G 2035 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1867-T 2034 |
| Stack | -1.40 | External closing pair is C 1869-G 2033 |
| Stack | -2.10 | External closing pair is G 1870-T 2032 |
| Stack | -2.50 | External closing pair is G 1871-C 2031 |
| Stack | -1.00 | External closing pair is T 1872-G 2030 |
| Stack | -0.90 | External closing pair is A 1873-T 2029 |
| Helix | -7.90 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1874-T 2028 |
| Stack | -2.10 | External closing pair is C 1876-G 2026 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 1877-A 2025 |
| Stack | -3.30 | External closing pair is C 1879-G 2024 |
| Stack | -2.10 | External closing pair is C 1880-G 2023 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is A 1881-T 2022 21 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1921-C 2016 |
| Stack | -2.40 | External closing pair is C 1922-G 2015 |
| Stack | -1.50 | External closing pair is G 1923-C 2014 |
| Stack | -1.40 | External closing pair is G 1924-T 2013 |
| Stack | -1.30 | External closing pair is T 1925-A 2012 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1926-G 2011 |
| Stack | -1.30 | External closing pair is T 1928-A 2009 |
| Stack | -0.60 | External closing pair is A 1929-T 2008 |
| Stack | -1.40 | External closing pair is G 1930-T 2007 |
| Stack | -1.30 | External closing pair is T 1931-A 2006 |
| Stack | -1.00 | External closing pair is T 1932-G 2005 |
| Helix | -5.60 | 6 base pairs. |
| Interior loop | 4.70 | External closing pair is A 1933-T 2004 |
| Stack | -2.40 | External closing pair is G 1937-C 1995 |
| Stack | -0.90 | External closing pair is A 1938-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1939-T 1993 |
| Stack | -3.30 | External closing pair is G 1941-C 1991 |
| Stack | -3.40 | External closing pair is G 1942-C 1990 |
| Stack | -2.10 | External closing pair is C 1943-G 1989 |
| Helix | -8.80 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1944-T 1988 |
| Stack | -0.90 | External closing pair is T 1946-A 1984 |
| Stack | -0.90 | External closing pair is T 1947-A 1983 |
| Stack | -2.40 | External closing pair is T 1948-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 1949-G 1981 |
| Stack | -0.90 | External closing pair is A 1950-T 1977 |
| Stack | -2.20 | External closing pair is A 1951-T 1976 |
| Stack | -2.10 | External closing pair is C 1952-G 1975 |
| Helix | -5.20 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is T 1953-A 1974 |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -0.60 | External closing pair is A 1163-T 1860 |
| Stack | -2.10 | External closing pair is G 1164-T 1859 |
| Stack | -2.40 | External closing pair is G 1165-C 1858 |
| Stack | -1.10 | External closing pair is A 1166-T 1857 |
| Helix | -6.20 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is T 1167-A 1856 |
| Stack | -2.50 | External closing pair is G 1174-T 1850 |
| Stack | -3.30 | External closing pair is C 1175-G 1849 |
| Stack | -2.10 | External closing pair is C 1176-G 1848 |
| Stack | -2.40 | External closing pair is T 1177-A 1847 |
| Stack | -2.10 | External closing pair is C 1178-G 1846 |
| Stack | -2.10 | External closing pair is A 1179-T 1845 |
| Helix | -14.50 | 7 base pairs. |
| Multi-loop | 0.50 | External closing pair is G 1180-C 1844 23 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1442-T 1839 |
| Stack | -0.90 | External closing pair is T 1443-A 1838 |
| Stack | -2.40 | External closing pair is T 1444-A 1837 |
| Helix | -4.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1836 |
| Stack | -2.10 | External closing pair is T 1446-A 1834 |
| Stack | -2.20 | External closing pair is G 1447-C 1833 |
| Stack | -0.90 | External closing pair is T 1448-A 1832 |
| Stack | -2.40 | External closing pair is T 1449-A 1831 |
| Stack | -2.10 | External closing pair is C 1450-G 1830 |
| Helix | -9.70 | 6 base pairs. |
| Multi-loop | 0.80 | External closing pair is T 1451-A 1829 26 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is G 1525-C 1822 |
| Stack | -0.90 | External closing pair is T 1526-A 1821 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is T 1527-A 1820 |
| Stack | -1.30 | External closing pair is T 1532-A 1816 |
| Stack | -0.60 | External closing pair is T 1533-G 1815 |
| Stack | -2.40 | External closing pair is T 1534-A 1814 |
| Stack | -3.30 | External closing pair is C 1535-G 1813 |
| Stack | -2.10 | External closing pair is C 1536-G 1812 |
| Stack | -1.10 | External closing pair is A 1537-T 1811 |
| Helix | -10.80 | 7 base pairs. |
| Interior loop | 3.20 | External closing pair is T 1538-A 1810 |
| Stack | -2.40 | External closing pair is T 1544-A 1805 |
| Stack | -2.10 | External closing pair is C 1545-G 1804 |
| Stack | -1.00 | External closing pair is T 1546-G 1803 |
| Stack | -2.20 | External closing pair is A 1547-T 1802 |
| Stack | -2.10 | External closing pair is C 1548-G 1801 |
| Helix | -9.80 | 6 base pairs. |
| Multi-loop | 4.10 | External closing pair is T 1549-A 1800 17 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -0.90 | External closing pair is A 1659-T 1765 |
| Stack | -2.20 | External closing pair is A 1660-T 1764 |
| Stack | -2.10 | External closing pair is C 1661-G 1763 |
| Stack | -2.40 | External closing pair is T 1662-A 1762 |
| Stack | -1.40 | External closing pair is C 1663-G 1761 |
| Stack | -1.30 | External closing pair is G 1664-T 1760 |
| Stack | -0.90 | External closing pair is A 1665-T 1759 |
| Stack | -2.10 | External closing pair is A 1666-T 1758 |
| Stack | -2.50 | External closing pair is G 1667-C 1757 |
| Stack | -1.00 | External closing pair is T 1668-G 1756 |
| Stack | -1.10 | External closing pair is A 1669-T 1755 |
| Stack | -1.00 | External closing pair is T 1670-A 1754 |
| Helix | -18.90 | 13 base pairs. |
| Interior loop | 2.20 | External closing pair is G 1671-T 1753 |
| Stack | -1.40 | External closing pair is T 1674-G 1750 |
| Stack | -3.40 | External closing pair is G 1675-C 1749 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1676-G 1748 |
| Stack | -0.90 | External closing pair is T 1677-A 1746 |
| Stack | -2.40 | External closing pair is T 1678-A 1745 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 4.10 | External closing pair is C 1679-G 1744 |
| Stack | -0.90 | External closing pair is T 1680-A 1739 |
| Stack | -2.40 | External closing pair is T 1681-A 1738 |
| Stack | -2.10 | External closing pair is C 1682-G 1737 |
| Stack | -2.10 | External closing pair is T 1683-A 1736 |
| Stack | -3.30 | External closing pair is G 1684-C 1735 |
| Helix | -10.80 | 6 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1685-C 1734 26 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.50 | External closing pair is G 1699-C 1706 |
| Helix | -2.50 | 2 base pairs. |
| Hairpin loop | 4.40 | Closing pair is T 1700-G 1705 |
| Stack | -2.10 | External closing pair is C 1552-G 1657 |
| Stack | -2.10 | External closing pair is T 1553-A 1656 |
| Stack | -2.40 | External closing pair is G 1554-C 1655 |
| Stack | -0.90 | External closing pair is A 1555-T 1654 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.10 | External closing pair is A 1556-T 1653 7 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.40 | External closing pair is G 1196-C 1437 |
| Stack | -1.10 | External closing pair is A 1197-T 1436 |
| Stack | -2.40 | External closing pair is T 1198-A 1435 |
| Stack | -2.10 | External closing pair is C 1199-G 1434 |
| Helix | -8.00 | 5 base pairs. |
| Multi-loop | 0.10 | External closing pair is T 1200-A 1433 18 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1302-C 1429 |
| Stack | -2.20 | External closing pair is G 1303-C 1428 |
| Stack | -1.30 | External closing pair is T 1304-A 1427 |
| Stack | -1.10 | External closing pair is A 1305-T 1426 |
| Helix | -7.90 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1306-A 1425 27 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -1.40 | External closing pair is G 1329-T 1365 |
| Stack | -0.90 | External closing pair is T 1330-A 1364 |
| Helix | -2.30 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1363 |
| Stack | -3.30 | External closing pair is C 1333-G 1361 |
| Stack | -2.10 | External closing pair is C 1334-G 1360 |
| Stack | -0.90 | External closing pair is A 1335-T 1359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 1336-T 1358 |
| Stack | -1.30 | External closing pair is T 1341-A 1357 |
| Stack | -1.10 | External closing pair is A 1342-T 1356 |
| Stack | -2.40 | External closing pair is T 1343-A 1355 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 4.90 | Closing pair is C 1344-G 1354 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -3.30 | External closing pair is C 1100-G 1130 |
| Stack | -2.40 | External closing pair is C 1101-G 1129 |
| Stack | -2.20 | External closing pair is G 1102-C 1128 |
| Stack | -2.40 | External closing pair is T 1103-A 1127 |
| Helix | -10.30 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1104-G 1126 |
| Stack | -2.40 | External closing pair is T 1106-A 1124 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 0.90 | External closing pair is C 1107-G 1123 |
| Stack | -2.10 | External closing pair is C 1111-G 1119 |
| Stack | -0.60 | External closing pair is A 1112-T 1118 |
| Helix | -2.70 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is G 1113-T 1117 |
| Stack | -3.40 | External closing pair is G 50-C 1055 |
| Stack | -2.10 | External closing pair is C 51-G 1054 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 3.70 | External closing pair is A 52-T 1053 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 1017-T 1044 |
| Stack | -2.20 | External closing pair is G 1018-C 1043 |
| Helix | -4.30 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1019-A 1042 |
| Stack | -2.40 | External closing pair is G 1024-C 1037 |
| Stack | -2.20 | External closing pair is A 1025-T 1036 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1026-G 1035 |
| Stack | -3.40 | External closing pair is G 55-C 1015 |
| Helix | -3.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 56-G 1014 |
| Stack | -1.30 | External closing pair is T 57-A 1012 |
| Stack | -0.60 | External closing pair is A 58-T 1011 |
| Stack | -0.50 | External closing pair is G 59-T 1010 |
| Stack | -1.40 | External closing pair is G 60-T 1009 |
| Helix | -3.80 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 61-A 1008 |
| Stack | -1.30 | External closing pair is T 63-A 1006 |
| Stack | -2.10 | External closing pair is A 64-T 1005 |
| Helix | -3.40 | 3 base pairs. |
| Bulge loop | 2.30 | External closing pair is G 65-C 1004 |
| Stack | -2.50 | External closing pair is G 67-T 1003 |
| Stack | -1.40 | External closing pair is C 68-G 1002 |
| Stack | -1.30 | External closing pair is G 69-T 1001 |
| Stack | -0.60 | External closing pair is A 70-T 1000 |
| Stack | -1.30 | External closing pair is G 71-T 999 |
| Stack | -1.10 | External closing pair is A 72-T 998 |
| Stack | -1.30 | External closing pair is T 73-A 997 |
| Stack | -2.20 | External closing pair is A 74-T 996 |
| Helix | -11.70 | 9 base pairs. |
| Bulge loop | 4.80 | External closing pair is C 75-G 995 |
| Stack | -3.30 | External closing pair is C 76-G 985 |
| Stack | -2.10 | External closing pair is C 77-G 984 |
| Stack | -0.90 | External closing pair is A 78-T 983 |
| Stack | -1.10 | External closing pair is A 79-T 982 |
| Stack | -2.40 | External closing pair is T 80-A 981 |
| Stack | -3.30 | External closing pair is C 81-G 980 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.00 | External closing pair is C 82-G 979 22 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is G 949-T 974 |
| Stack | -2.40 | External closing pair is G 950-C 973 |
| Stack | -1.10 | External closing pair is A 951-T 972 |
| Stack | -2.10 | External closing pair is T 952-A 971 |
| Stack | -2.20 | External closing pair is G 953-C 970 |
| Helix | -9.90 | 6 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 954-A 969 |
| Stack | -2.10 | External closing pair is C 956-G 968 |
| Stack | -1.30 | External closing pair is T 957-A 967 |
| Helix | -3.40 | 3 base pairs. |
| Hairpin loop | 5.60 | Closing pair is A 958-T 966 |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 90-A 874 |
| Stack | -2.20 | External closing pair is G 91-C 873 |
| Stack | -0.90 | External closing pair is T 92-A 872 |
| Stack | -2.10 | External closing pair is T 93-A 871 |
| Stack | -2.50 | External closing pair is G 94-C 870 |
| Stack | -0.60 | External closing pair is T 95-G 869 |
| Helix | -10.40 | 7 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 96-A 868 |
| Stack | -2.50 | External closing pair is G 97-T 866 |
| Stack | -2.10 | External closing pair is C 98-G 865 |
| Stack | -1.40 | External closing pair is T 99-G 864 |
| Stack | -2.20 | External closing pair is G 100-C 863 |
| Stack | -0.90 | External closing pair is T 101-A 862 |
| Helix | -9.10 | 6 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 102-A 861 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 116-G 811 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -3.40 | External closing pair is G 118-C 796 |
| Stack | -2.10 | External closing pair is C 119-G 795 |
| Stack | -0.90 | External closing pair is T 120-A 794 |
| Stack | -1.30 | External closing pair is T 121-A 793 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 122-T 792 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -2.40 | External closing pair is T 127-A 762 |
| Stack | -3.30 | External closing pair is C 128-G 761 |
| Stack | -1.40 | External closing pair is C 129-G 760 |
| Helix | -7.10 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is G 130-T 759 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
Structure 44
seq.txt
ΔG = -800.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 5.30 | External closing pair is T 92-G 2680 26 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -2.40 | External closing pair is T 1948-A 2648 |
| Stack | -2.10 | External closing pair is C 1949-G 2647 |
| Stack | -0.90 | External closing pair is A 1950-T 2646 |
| Stack | -2.20 | External closing pair is A 1951-T 2645 |
| Stack | -2.10 | External closing pair is C 1952-G 2644 |
| Helix | -9.70 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1953-A 2643 |
| Stack | -2.10 | External closing pair is G 1956-T 2640 |
| Stack | -3.40 | External closing pair is G 1957-C 2639 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1958-G 2638 |
| Stack | -2.40 | External closing pair is G 1960-C 2636 |
| Stack | -0.90 | External closing pair is A 1961-T 2635 |
| Helix | -3.30 | 3 base pairs. |
| Multi-loop | 3.20 | External closing pair is A 1962-T 2634 10 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2012-T 2631 |
| Stack | -2.40 | External closing pair is T 2013-A 2630 |
| Stack | -2.40 | External closing pair is C 2014-G 2629 |
| Stack | -3.40 | External closing pair is G 2015-C 2628 |
| Helix | -9.30 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2016-G 2627 |
| Stack | -1.30 | External closing pair is T 2018-A 2626 |
| Stack | -0.60 | External closing pair is T 2019-G 2625 |
| Stack | -0.90 | External closing pair is T 2020-A 2624 |
| Stack | -0.90 | External closing pair is T 2021-A 2623 |
| Stack | -1.00 | External closing pair is T 2022-A 2622 |
| Stack | -0.50 | External closing pair is G 2023-T 2621 |
| Stack | -1.30 | External closing pair is G 2024-T 2620 |
| Stack | -0.60 | External closing pair is A 2025-T 2619 |
| Stack | -2.50 | External closing pair is G 2026-T 2618 |
| Helix | -9.60 | 10 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 2027-G 2617 13 ss bases & 5 closing helices. |
| Stack | -0.90 | External closing pair is T 2103-A 2611 |
| Stack | -1.30 | External closing pair is T 2104-A 2610 |
| Stack | -1.40 | External closing pair is A 2105-T 2609 |
| Helix | -3.60 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2106-G 2608 |
| Stack | -2.20 | External closing pair is A 2108-T 2606 |
| Stack | -2.10 | External closing pair is C 2109-G 2605 |
| Stack | -1.10 | External closing pair is A 2110-T 2604 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 2.50 | External closing pair is T 2111-A 2603 |
| Stack | -2.20 | External closing pair is A 2112-T 2601 |
| Stack | -3.30 | External closing pair is C 2113-G 2600 |
| Stack | -2.10 | External closing pair is C 2114-G 2599 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 2115-T 2598 6 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 2118-T 2137 |
| Stack | -2.50 | External closing pair is G 2119-T 2136 |
| Stack | -2.10 | External closing pair is C 2120-G 2135 |
| Stack | -0.90 | External closing pair is A 2121-T 2134 |
| Stack | -2.20 | External closing pair is A 2122-T 2133 |
| Stack | -3.30 | External closing pair is C 2123-G 2132 |
| Helix | -11.50 | 7 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 2124-G 2131 |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.30 | External closing pair is T 2052-A 2073 |
| Stack | -1.40 | External closing pair is A 2053-T 2072 |
| Stack | 0.30 | External closing pair is T 2054-G 2071 |
| Stack | -2.50 | External closing pair is G 2055-T 2070 |
| Stack | -3.30 | External closing pair is C 2056-G 2069 |
| Stack | -2.10 | External closing pair is C 2057-G 2068 |
| Stack | -0.90 | External closing pair is A 2058-T 2067 |
| Stack | -1.40 | External closing pair is A 2059-T 2066 |
| Helix | -12.60 | 9 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2060-G 2065 |
| Stack | -3.40 | External closing pair is G 2030-C 2049 |
| Stack | -2.10 | External closing pair is C 2031-G 2048 |
| Stack | -1.40 | External closing pair is T 2032-G 2047 |
| Helix | -6.90 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 2033-C 2046 |
| Stack | -2.10 | External closing pair is T 2034-A 2044 |
| Stack | -2.40 | External closing pair is G 2035-C 2043 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 2036-T 2042 |
| Stack | -0.90 | External closing pair is A 1968-T 2008 |
| Stack | -1.10 | External closing pair is A 1969-T 2007 |
| Stack | -1.30 | External closing pair is T 1970-A 2006 |
| Helix | -3.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1971-G 2005 |
| Stack | -1.30 | External closing pair is T 1973-A 2003 |
| Stack | -0.60 | External closing pair is A 1974-T 2002 |
| Stack | -1.40 | External closing pair is G 1975-T 2001 |
| Stack | -0.90 | External closing pair is T 1976-A 2000 |
| Stack | -0.90 | External closing pair is T 1977-A 1999 |
| Stack | -2.40 | External closing pair is T 1978-A 1998 |
| Helix | -7.50 | 7 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1979-G 1997 |
| Stack | -2.40 | External closing pair is G 1981-C 1995 |
| Stack | -0.90 | External closing pair is A 1982-T 1994 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 1983-T 1993 |
| Stack | -1.30 | External closing pair is G 108-T 1947 |
| Stack | -2.10 | External closing pair is A 109-T 1946 |
| Stack | -2.20 | External closing pair is G 110-C 1945 |
| Stack | -2.10 | External closing pair is T 111-A 1944 |
| Stack | -3.40 | External closing pair is G 112-C 1943 |
| Stack | -3.30 | External closing pair is C 113-G 1942 |
| Helix | -14.40 | 7 base pairs. |
| Multi-loop | -0.10 | External closing pair is C 114-G 1941 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 165-G 1937 |
| Stack | -2.40 | External closing pair is T 166-A 1936 |
| Stack | -2.10 | External closing pair is C 167-G 1935 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 4.00 | External closing pair is T 168-G 1934 7 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 190-T 1932 |
| Stack | -2.50 | External closing pair is G 191-T 1931 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 1930 |
| Stack | -1.30 | External closing pair is T 194-A 1929 |
| Stack | -0.90 | External closing pair is A 195-T 1928 |
| Stack | -0.90 | External closing pair is A 196-T 1927 |
| Stack | -0.60 | External closing pair is A 197-T 1926 |
| Stack | -2.50 | External closing pair is G 198-T 1925 |
| Stack | -3.30 | External closing pair is C 199-G 1924 |
| Stack | -2.40 | External closing pair is C 200-G 1923 |
| Helix | -11.90 | 8 base pairs. |
| Interior loop | -1.00 | External closing pair is G 201-C 1922 |
| Stack | -1.40 | External closing pair is A 203-T 1920 |
| Stack | -1.40 | External closing pair is T 204-G 1919 |
| Stack | -2.40 | External closing pair is G 205-C 1918 |
| Stack | -2.10 | External closing pair is A 206-T 1917 |
| Stack | -2.20 | External closing pair is G 207-C 1916 |
| Stack | -0.90 | External closing pair is T 208-A 1915 |
| Stack | -2.10 | External closing pair is T 209-A 1914 |
| Stack | -2.20 | External closing pair is G 210-C 1913 |
| Helix | -14.70 | 9 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 211-A 1912 9 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -0.90 | External closing pair is T 212-A 1868 |
| Stack | -2.10 | External closing pair is T 213-A 1867 |
| Stack | -2.40 | External closing pair is G 214-C 1866 |
| Helix | -5.40 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 215-T 1865 3 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 850-C 1863 |
| Stack | -2.20 | External closing pair is A 851-T 1862 |
| Stack | -2.10 | External closing pair is C 852-G 1861 |
| Stack | -0.90 | External closing pair is A 853-T 1860 |
| Stack | -2.10 | External closing pair is A 854-T 1859 |
| Stack | -2.40 | External closing pair is G 855-C 1858 |
| Helix | -12.10 | 7 base pairs. |
| Bulge loop | 4.60 | External closing pair is A 856-T 1857 |
| Stack | -0.90 | External closing pair is A 857-T 1852 |
| Stack | -0.90 | External closing pair is A 858-T 1851 |
| Stack | -1.40 | External closing pair is A 859-T 1850 |
| Helix | -3.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 860-G 1849 |
| Stack | -1.40 | External closing pair is C 863-G 1846 |
| Stack | -2.10 | External closing pair is G 864-T 1845 |
| Stack | -2.20 | External closing pair is G 865-C 1844 |
| Stack | -1.30 | External closing pair is T 866-A 1843 |
| Helix | -7.00 | 5 base pairs. |
| Bulge loop | 5.60 | External closing pair is A 867-T 1842 |
| Stack | -0.90 | External closing pair is T 875-A 1841 |
| Stack | -1.30 | External closing pair is T 876-A 1840 |
| Stack | -1.10 | External closing pair is A 877-T 1839 |
| Stack | -0.90 | External closing pair is T 878-A 1838 |
| Stack | -1.30 | External closing pair is T 879-A 1837 |
| Stack | -1.00 | External closing pair is T 880-G 1836 |
| Stack | -1.10 | External closing pair is A 881-T 1835 |
| Stack | -2.10 | External closing pair is T 882-A 1834 |
| Helix | -9.70 | 9 base pairs. |
| Multi-loop | 0.20 | External closing pair is G 883-C 1833 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1694-G 1815 |
| Stack | -2.40 | External closing pair is T 1695-A 1814 |
| Stack | -3.30 | External closing pair is C 1696-G 1813 |
| Stack | -2.10 | External closing pair is C 1697-G 1812 |
| Helix | -9.90 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1698-T 1811 9 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is G 1701-C 1752 |
| Stack | -2.20 | External closing pair is A 1702-T 1751 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 1703-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -4.80 | 3 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.30 | External closing pair is G 885-C 1687 |
| Stack | -3.40 | External closing pair is G 886-C 1686 |
| Stack | -2.10 | External closing pair is C 887-G 1685 |
| Stack | -1.00 | External closing pair is T 888-G 1684 |
| Helix | -9.80 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 889-T 1683 6 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 1664-C 1679 |
| Stack | -0.90 | External closing pair is A 1665-T 1678 |
| Stack | -2.10 | External closing pair is A 1666-T 1677 |
| Stack | -2.50 | External closing pair is G 1667-C 1676 |
| Stack | -1.00 | External closing pair is T 1668-G 1675 |
| Helix | -8.90 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is A 1669-T 1674 |
| Stack | -2.20 | External closing pair is G 891-C 1661 |
| Stack | -0.90 | External closing pair is T 892-A 1660 |
| Stack | -0.90 | External closing pair is T 893-A 1659 |
| Stack | -2.40 | External closing pair is T 894-A 1658 |
| Helix | -6.40 | 5 base pairs. |
| Multi-loop | -0.70 | External closing pair is C 895-G 1657 7 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 950-C 1655 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 2.30 | External closing pair is A 951-T 1654 |
| Stack | -2.50 | External closing pair is G 955-T 1651 |
| Stack | -2.10 | External closing pair is C 956-G 1650 |
| Helix | -4.60 | 3 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 957-A 1649 8 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -2.10 | External closing pair is T 963-A 1631 |
| Stack | -3.40 | External closing pair is G 964-C 1630 |
| Stack | -2.10 | External closing pair is C 965-G 1629 |
| Helix | -7.60 | 4 base pairs. |
| Interior loop | 0.00 | External closing pair is T 966-A 1628 |
| Stack | -2.20 | External closing pair is A 969-T 1625 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.10 | External closing pair is C 970-G 1624 15 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 979-C 1595 |
| Helix | -3.30 | 2 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 980-C 1594 |
| Stack | -0.90 | External closing pair is T 982-A 1593 |
| Stack | -2.10 | External closing pair is T 983-A 1592 |
| Stack | -3.30 | External closing pair is G 984-C 1591 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.30 | External closing pair is G 985-C 1590 |
| Stack | -0.90 | External closing pair is T 991-A 1586 |
| Stack | -2.40 | External closing pair is T 992-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 993-G 1584 |
| Stack | -2.10 | External closing pair is T 994-A 1582 |
| Stack | -2.20 | External closing pair is G 995-C 1581 |
| Stack | -1.30 | External closing pair is T 996-A 1580 |
| Stack | -1.10 | External closing pair is A 997-T 1579 |
| Stack | -1.30 | External closing pair is T 998-A 1578 |
| Stack | -0.50 | External closing pair is T 999-G 1577 |
| Stack | -0.60 | External closing pair is T 1000-G 1576 |
| Stack | -2.10 | External closing pair is T 1001-A 1575 |
| Stack | -2.20 | External closing pair is G 1002-C 1574 |
| Helix | -13.40 | 10 base pairs. |
| Multi-loop | 3.90 | External closing pair is T 1003-A 1573 30 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1511-A 1567 |
| Stack | -0.90 | External closing pair is T 1512-A 1566 |
| Stack | -0.90 | External closing pair is T 1513-A 1565 |
| Stack | -0.90 | External closing pair is T 1514-A 1564 |
| Stack | -2.10 | External closing pair is T 1515-A 1563 |
| Stack | -3.40 | External closing pair is G 1516-C 1562 |
| Stack | -2.10 | External closing pair is C 1517-G 1561 |
| Helix | -11.20 | 8 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 1518-T 1560 |
| Stack | -3.40 | External closing pair is G 1522-C 1559 |
| Stack | -2.10 | External closing pair is C 1523-G 1558 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1524-T 1557 |
| Stack | -1.30 | External closing pair is T 1526-A 1555 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -7.90 | 6 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -1.30 | External closing pair is G 1024-T 1505 |
| Stack | -2.20 | External closing pair is A 1025-T 1504 |
| Stack | -2.10 | External closing pair is C 1026-G 1503 |
| Stack | -0.90 | External closing pair is T 1027-A 1502 |
| Stack | -2.10 | External closing pair is T 1028-A 1501 |
| Stack | -3.40 | External closing pair is G 1029-C 1500 |
| Stack | -2.10 | External closing pair is C 1030-G 1499 |
| Helix | -14.10 | 8 base pairs. |
| Multi-loop | 4.70 | External closing pair is T 1031-A 1498 14 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -0.90 | External closing pair is A 1121-T 1455 |
| Stack | -2.10 | External closing pair is A 1122-T 1454 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1123-C 1453 |
| Stack | -2.10 | External closing pair is A 1124-T 1451 |
| Stack | -1.50 | External closing pair is G 1125-C 1450 |
| Stack | -1.30 | External closing pair is G 1126-T 1449 |
| Stack | -2.20 | External closing pair is A 1127-T 1448 |
| Stack | -1.40 | External closing pair is C 1128-G 1447 |
| Stack | -2.10 | External closing pair is G 1129-T 1446 |
| Stack | -2.40 | External closing pair is G 1130-C 1445 |
| Stack | -0.60 | External closing pair is A 1131-T 1444 |
| Stack | -1.40 | External closing pair is G 1132-T 1443 |
| Stack | -1.30 | External closing pair is T 1133-A 1442 |
| Helix | -16.30 | 11 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1134-G 1441 |
| Stack | -2.40 | External closing pair is T 1136-A 1439 |
| Helix | -2.40 | 2 base pairs. |
| Multi-loop | 1.20 | External closing pair is C 1137-G 1438 30 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1367-A 1420 |
| Stack | -2.10 | External closing pair is C 1368-G 1419 |
| Stack | -2.10 | External closing pair is A 1369-T 1418 |
| Stack | -3.40 | External closing pair is G 1370-C 1417 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is C 1371-G 1416 16 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -3.40 | External closing pair is G 1147-C 1362 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1148-G 1361 |
| Stack | -1.30 | External closing pair is G 1150-T 1359 |
| Stack | -1.10 | External closing pair is A 1151-T 1358 |
| Stack | -1.30 | External closing pair is T 1152-A 1357 |
| Stack | -1.10 | External closing pair is A 1153-T 1356 |
| Stack | -1.30 | External closing pair is T 1154-A 1355 |
| Helix | -6.10 | 6 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1155-G 1354 |
| Stack | -1.30 | External closing pair is T 1159-A 1351 |
| Stack | -1.10 | External closing pair is A 1160-T 1350 |
| Stack | -1.30 | External closing pair is T 1161-A 1349 |
| Stack | -0.90 | External closing pair is A 1162-T 1348 |
| Helix | -4.60 | 5 base pairs. |
| Interior loop | 2.50 | External closing pair is A 1163-T 1347 |
| Stack | -2.40 | External closing pair is G 1165-C 1344 |
| Stack | -1.10 | External closing pair is A 1166-T 1343 |
| Stack | -1.00 | External closing pair is T 1167-A 1342 |
| Stack | -1.30 | External closing pair is G 1168-T 1341 |
| Stack | -0.90 | External closing pair is A 1169-T 1340 |
| Stack | -0.90 | External closing pair is A 1170-T 1339 |
| Helix | -7.60 | 7 base pairs. |
| Multi-loop | 1.40 | External closing pair is A 1171-T 1338 28 ss bases & 4 closing helices. |
| Stack | -2.20 | External closing pair is A 1300-T 1330 |
| Stack | -2.40 | External closing pair is C 1301-G 1329 |
| Helix | -4.60 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1302-C 1328 |
| Stack | -2.20 | External closing pair is G 1303-C 1326 |
| Stack | -1.30 | External closing pair is T 1304-A 1325 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.00 | External closing pair is A 1305-T 1324 |
| Stack | -0.90 | External closing pair is T 1310-A 1321 |
| Stack | -2.10 | External closing pair is T 1311-A 1320 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 1312-C 1319 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -1.30 | External closing pair is T 1032-A 1114 |
| Stack | -0.60 | External closing pair is T 1033-G 1113 |
| Stack | -2.10 | External closing pair is T 1034-A 1112 |
| Stack | -2.20 | External closing pair is G 1035-C 1111 |
| Stack | -2.40 | External closing pair is T 1036-A 1110 |
| Stack | -2.10 | External closing pair is C 1037-G 1109 |
| Stack | -2.10 | External closing pair is T 1038-A 1108 |
| Helix | -12.80 | 8 base pairs. |
| Interior loop | 3.40 | External closing pair is G 1039-C 1107 |
| Stack | -2.40 | External closing pair is T 1051-A 1095 |
| Stack | -2.10 | External closing pair is C 1052-G 1094 |
| Stack | -2.10 | External closing pair is T 1053-A 1093 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 5.60 | External closing pair is G 1054-C 1092 |
| Stack | -2.10 | External closing pair is T 1067-A 1091 |
| Stack | -2.40 | External closing pair is G 1068-C 1090 |
| Stack | -0.90 | External closing pair is A 1069-T 1089 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 2.60 | External closing pair is A 1070-T 1088 |
| Stack | -2.10 | External closing pair is T 1073-A 1084 |
| Helix | -2.10 | 2 base pairs. |
| Hairpin loop | 3.20 | Closing pair is G 1074-C 1083 |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -0.90 | External closing pair is A 218-T 849 |
| Stack | -1.10 | External closing pair is A 219-T 848 |
| Stack | -1.00 | External closing pair is T 220-A 847 |
| Stack | -2.50 | External closing pair is G 221-T 846 |
| Helix | -5.50 | 5 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 845 13 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 247-A 840 |
| Stack | -2.10 | External closing pair is C 248-G 839 |
| Stack | -2.10 | External closing pair is T 249-A 838 |
| Helix | -6.60 | 4 base pairs. |
| Bulge loop | 4.50 | External closing pair is G 250-C 837 |
| Stack | -2.10 | External closing pair is T 256-A 836 |
| Stack | -3.30 | External closing pair is G 257-C 835 |
| Stack | -2.40 | External closing pair is G 258-C 834 |
| Stack | -0.90 | External closing pair is A 259-T 833 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 3.20 | External closing pair is A 260-T 832 |
| Stack | -2.10 | External closing pair is A 268-T 824 |
| Stack | -3.40 | External closing pair is G 269-C 823 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.70 | External closing pair is C 270-G 822 |
| Stack | -2.10 | External closing pair is A 276-T 820 |
| Stack | -2.40 | External closing pair is G 277-C 819 |
| Stack | -0.90 | External closing pair is A 278-T 818 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 279-T 817 |
| Stack | -3.40 | External closing pair is G 280-C 815 |
| Stack | -3.30 | External closing pair is C 281-G 814 |
| Stack | -2.40 | External closing pair is C 282-G 813 |
| Stack | -3.40 | External closing pair is G 283-C 812 |
| Helix | -12.50 | 5 base pairs. |
| Multi-loop | 0.80 | External closing pair is C 284-G 811 26 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is C 350-G 806 |
| Stack | -2.40 | External closing pair is G 351-C 805 |
| Helix | -4.80 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 352-T 804 |
| Stack | -2.10 | External closing pair is C 353-G 802 |
| Stack | -0.90 | External closing pair is T 354-A 801 |
| Stack | -0.90 | External closing pair is T 355-A 800 |
| Stack | -1.00 | External closing pair is T 356-A 799 |
| Helix | -4.90 | 5 base pairs. |
| Multi-loop | 2.00 | External closing pair is G 357-T 798 10 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 417-C 789 |
| Stack | -3.30 | External closing pair is C 418-G 788 |
| Stack | -2.10 | External closing pair is C 419-G 787 |
| Stack | -0.90 | External closing pair is A 420-T 786 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 3.30 | External closing pair is A 421-T 785 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 762-T 779 |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -7.80 | 5 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -3.30 | External closing pair is C 427-G 761 |
| Stack | -2.10 | External closing pair is C 428-G 760 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 4.20 | External closing pair is A 429-T 759 |
| Stack | -2.20 | External closing pair is A 430-T 755 |
| Helix | -2.20 | 2 base pairs. |
| Interior loop | -3.50 | External closing pair is C 431-G 754 |
| Stack | -0.90 | External closing pair is A 434-T 751 |
| Stack | -2.20 | External closing pair is A 435-T 750 |
| Stack | -2.10 | External closing pair is C 436-G 749 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 437-A 748 5 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -10.00 | 6 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -1.40 | External closing pair is G 439-T 629 |
| Stack | -2.10 | External closing pair is T 440-A 628 |
| Stack | -2.20 | External closing pair is G 441-C 627 |
| Stack | -2.40 | External closing pair is T 442-A 626 |
| Helix | -8.10 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is C 443-G 625 |
| Stack | -0.90 | External closing pair is A 447-T 621 |
| Stack | -0.90 | External closing pair is A 448-T 620 |
| Stack | -2.20 | External closing pair is A 449-T 619 |
| Stack | -1.40 | External closing pair is C 450-G 618 |
| Stack | -2.10 | External closing pair is G 451-T 617 |
| Helix | -7.50 | 6 base pairs. |
| Interior loop | 3.30 | External closing pair is G 452-C 616 |
| Stack | -0.90 | External closing pair is A 458-T 613 |
| Stack | -1.40 | External closing pair is A 459-T 612 |
| Stack | 0.30 | External closing pair is T 460-G 611 |
| Stack | -2.10 | External closing pair is G 461-T 610 |
| Stack | -2.40 | External closing pair is G 462-C 609 |
| Stack | -2.10 | External closing pair is A 463-T 608 |
| Stack | -2.40 | External closing pair is G 464-C 607 |
| Helix | -11.00 | 8 base pairs. |
| Interior loop | 4.10 | External closing pair is A 465-T 606 |
| Stack | -1.00 | External closing pair is T 467-A 602 |
| Stack | -1.30 | External closing pair is G 468-T 601 |
| Stack | -0.60 | External closing pair is A 469-T 600 |
| Stack | -1.30 | External closing pair is G 470-T 599 |
| Stack | -0.90 | External closing pair is A 471-T 598 |
| Stack | -0.90 | External closing pair is A 472-T 597 |
| Helix | -6.00 | 7 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 473-T 596 19 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 519-C 589 |
| Stack | -2.20 | External closing pair is G 520-C 588 |
| Stack | -1.00 | External closing pair is T 521-A 587 |
| Stack | -1.30 | External closing pair is G 522-T 586 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 523-T 585 |
| Stack | -2.10 | External closing pair is A 524-T 582 |
| Stack | -3.40 | External closing pair is G 525-C 581 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is C 526-G 580 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 486-A 517 |
| Stack | -1.10 | External closing pair is A 487-T 516 |
| Stack | -0.90 | External closing pair is T 488-A 515 |
| Stack | -0.90 | External closing pair is T 489-A 514 |
| Stack | -1.30 | External closing pair is T 490-A 513 |
| Stack | -1.40 | External closing pair is T 491-G 512 |
| Stack | -3.30 | External closing pair is G 492-C 511 |
| Helix | -10.20 | 8 base pairs. |
| Hairpin loop | 5.90 | Closing pair is G 493-C 510 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -3.30 | External closing pair is C 298-G 340 |
| Stack | -2.10 | External closing pair is C 299-G 339 |
| Stack | -0.90 | External closing pair is T 300-A 338 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 3.10 | External closing pair is T 301-A 337 |
| Stack | -1.40 | External closing pair is A 311-T 327 |
| Stack | -0.60 | External closing pair is T 312-G 326 |
| Stack | -0.90 | External closing pair is T 313-A 325 |
| Stack | -1.00 | External closing pair is T 314-A 324 |
| Stack | -1.40 | External closing pair is G 315-T 323 |
| Helix | -5.30 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 316-A 322 |
| Stack | -1.00 | External closing pair is T 232-G 246 |
| Stack | -1.40 | External closing pair is A 233-T 245 |
| Stack | -1.00 | External closing pair is T 234-G 244 |
| Stack | -2.10 | External closing pair is A 235-T 243 |
| Stack | -3.30 | External closing pair is G 236-C 242 |
| Helix | -8.80 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is G 237-C 241 |
| Stack | -2.10 | External closing pair is A 173-T 187 |
| Stack | -2.20 | External closing pair is G 174-C 186 |
| Stack | -1.30 | External closing pair is T 175-A 185 |
| Stack | -1.10 | External closing pair is A 176-T 184 |
| Helix | -6.70 | 5 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 177-A 183 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |
Structure 45
seq.txt
ΔG = -798.00
| Structural element | δG | Information |
|---|---|---|
| External loop | -0.60 | 23 ss bases & 1 closing helices. |
| Stack | -1.10 | External closing pair is A 22-T 3136 |
| Stack | -1.30 | External closing pair is T 23-A 3135 |
| Stack | -0.60 | External closing pair is A 24-T 3134 |
| Stack | -1.40 | External closing pair is G 25-T 3133 |
| Stack | -1.30 | External closing pair is T 26-A 3132 |
| Helix | -5.70 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 27-T 3131 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.40 | External closing pair is G 39-C 3109 |
| Stack | -3.30 | External closing pair is C 40-G 3108 |
| Stack | -3.30 | External closing pair is C 41-G 3107 |
| Stack | -2.10 | External closing pair is C 42-G 3106 |
| Stack | -0.90 | External closing pair is T 43-A 3105 |
| Stack | -0.90 | External closing pair is T 44-A 3104 |
| Stack | -2.10 | External closing pair is T 45-A 3103 |
| Helix | -16.00 | 8 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 46-C 3102 |
| Stack | -0.90 | External closing pair is T 48-A 3101 |
| Stack | -1.00 | External closing pair is T 49-A 3100 |
| Stack | -2.50 | External closing pair is G 50-T 3099 |
| Helix | -4.40 | 4 base pairs. |
| Multi-loop | 1.60 | External closing pair is C 51-G 3098 19 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1092-G 3087 |
| Stack | -2.10 | External closing pair is A 1093-T 3086 |
| Helix | -4.20 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1094-C 3085 |
| Stack | -2.40 | External closing pair is T 1096-A 3083 |
| Stack | -2.10 | External closing pair is C 1097-G 3082 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 1.10 | External closing pair is A 1098-T 3081 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1115-G 3076 |
| Stack | -0.90 | External closing pair is T 1116-A 3075 |
| Stack | -0.90 | External closing pair is T 1117-A 3074 |
| Stack | -2.10 | External closing pair is T 1118-A 3073 |
| Helix | -6.00 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is G 1119-C 3072 18 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 3024-A 3058 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.90 | External closing pair is G 3025-C 3057 |
| Stack | -2.10 | External closing pair is G 3028-T 3054 |
| Stack | -2.20 | External closing pair is G 3029-C 3053 |
| Stack | -2.40 | External closing pair is T 3030-A 3052 |
| Stack | -2.10 | External closing pair is C 3031-G 3051 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 2.20 | External closing pair is A 3032-T 3050 |
| Stack | -2.10 | External closing pair is T 3035-A 3047 |
| Stack | -3.30 | External closing pair is G 3036-C 3046 |
| Stack | -2.50 | External closing pair is G 3037-C 3045 |
| Helix | -7.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 3038-G 3044 |
| Stack | -1.30 | External closing pair is G 1123-T 3021 |
| Stack | -2.10 | External closing pair is A 1124-T 3020 |
| Helix | -3.40 | 3 base pairs. |
| Interior loop | -0.80 | External closing pair is G 1125-C 3019 |
| Stack | -2.40 | External closing pair is C 1128-G 3016 |
| Stack | -3.30 | External closing pair is G 1129-C 3015 |
| Stack | -2.40 | External closing pair is G 1130-C 3014 |
| Stack | -2.10 | External closing pair is A 1131-T 3013 |
| Stack | -2.50 | External closing pair is G 1132-C 3012 |
| Helix | -12.70 | 6 base pairs. |
| Bulge loop | 5.90 | External closing pair is T 1133-G 3011 |
| Stack | -2.20 | External closing pair is A 1144-T 3010 |
| Stack | -2.10 | External closing pair is C 1145-G 3009 |
| Stack | -2.10 | External closing pair is A 1146-T 3008 |
| Helix | -6.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 1147-C 3007 |
| Stack | -2.10 | External closing pair is A 1149-T 3006 |
| Stack | -2.40 | External closing pair is G 1150-C 3005 |
| Stack | -1.40 | External closing pair is A 1151-T 3004 |
| Stack | -1.00 | External closing pair is T 1152-G 3003 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 1153-T 3002 |
| Stack | -1.30 | External closing pair is T 1154-A 2999 |
| Stack | -1.00 | External closing pair is T 1155-G 2998 |
| Stack | -1.40 | External closing pair is A 1156-T 2997 |
| Helix | -3.70 | 4 base pairs. |
| Interior loop | 1.90 | External closing pair is T 1157-G 2996 |
| Stack | -1.00 | External closing pair is T 1161-G 2991 |
| Stack | -0.90 | External closing pair is A 1162-T 2990 |
| Stack | -2.10 | External closing pair is A 1163-T 2989 |
| Stack | -1.50 | External closing pair is G 1164-C 2988 |
| Helix | -5.50 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 1165-T 2987 5 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 2710-C 2984 |
| Stack | -1.40 | External closing pair is C 2711-G 2983 |
| Stack | -2.50 | External closing pair is G 2712-T 2982 |
| Stack | -2.10 | External closing pair is C 2713-G 2981 |
| Stack | -2.20 | External closing pair is A 2714-T 2980 |
| Stack | -2.40 | External closing pair is C 2715-G 2979 |
| Stack | -3.40 | External closing pair is G 2716-C 2978 |
| Helix | -17.40 | 8 base pairs. |
| Bulge loop | 5.30 | External closing pair is C 2717-G 2977 |
| Stack | -2.10 | External closing pair is A 2718-T 2967 |
| Stack | -3.40 | External closing pair is G 2719-C 2966 |
| Stack | -2.10 | External closing pair is C 2720-G 2965 |
| Stack | -1.30 | External closing pair is T 2721-A 2964 |
| Stack | -0.90 | External closing pair is A 2722-T 2963 |
| Stack | -1.10 | External closing pair is A 2723-T 2962 |
| Stack | -0.90 | External closing pair is T 2724-A 2961 |
| Helix | -11.80 | 8 base pairs. |
| Multi-loop | 3.30 | External closing pair is T 2725-A 2960 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 2941-G 2958 |
| Stack | -2.10 | External closing pair is C 2942-G 2957 |
| Stack | -1.00 | External closing pair is T 2943-A 2956 |
| Stack | -2.10 | External closing pair is G 2944-T 2955 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 4.30 | Closing pair is G 2945-C 2954 |
| Interior loop | -4.10 | External closing pair is G 2727-C 2926 |
| Stack | -2.10 | External closing pair is C 2730-G 2923 |
| Stack | -2.20 | External closing pair is A 2731-T 2922 |
| Helix | -4.30 | 3 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 2732-G 2921 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2734-C 2765 |
| Stack | -2.10 | External closing pair is C 2735-G 2764 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is A 2736-T 2763 |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -2.10 | External closing pair is T 1167-A 2707 |
| Stack | -2.40 | External closing pair is G 1168-C 2706 |
| Stack | -0.90 | External closing pair is A 1169-T 2705 |
| Stack | -0.90 | External closing pair is A 1170-T 2704 |
| Stack | -2.20 | External closing pair is A 1171-T 2703 |
| Helix | -8.50 | 6 base pairs. |
| Interior loop | -4.40 | External closing pair is C 1172-G 2702 |
| Stack | -3.30 | External closing pair is C 1175-G 2699 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 1176-G 2698 |
| Stack | -2.10 | External closing pair is C 1178-G 2695 |
| Stack | -2.10 | External closing pair is A 1179-T 2694 |
| Stack | -2.40 | External closing pair is G 1180-C 2693 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is A 1181-T 2692 |
| Stack | -3.30 | External closing pair is C 1183-G 2690 |
| Stack | -2.10 | External closing pair is C 1184-G 2689 |
| Helix | -5.40 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is A 1185-T 2688 |
| Stack | -2.10 | External closing pair is C 1186-G 2685 |
| Stack | -1.10 | External closing pair is A 1187-T 2684 |
| Stack | -0.90 | External closing pair is T 1188-A 2683 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 4.10 | External closing pair is T 1189-A 2682 |
| Stack | -1.40 | External closing pair is T 1193-G 2680 |
| Helix | -1.40 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1194-C 2679 |
| Stack | -2.40 | External closing pair is G 1196-C 2678 |
| Stack | -1.10 | External closing pair is A 1197-T 2677 |
| Stack | -2.40 | External closing pair is T 1198-A 2676 |
| Stack | -2.10 | External closing pair is C 1199-G 2675 |
| Stack | -1.00 | External closing pair is T 1200-G 2674 |
| Stack | -0.90 | External closing pair is A 1201-T 2673 |
| Stack | -2.20 | External closing pair is A 1202-T 2672 |
| Helix | -12.10 | 8 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1203-G 2671 22 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 1302-C 2660 |
| Stack | -1.40 | External closing pair is G 1303-T 2659 |
| Stack | -1.30 | External closing pair is T 1304-A 2658 |
| Stack | -1.10 | External closing pair is A 1305-T 2657 |
| Stack | -1.30 | External closing pair is T 1306-A 2656 |
| Stack | -1.10 | External closing pair is A 1307-T 2655 |
| Stack | -0.90 | External closing pair is T 1308-A 2654 |
| Stack | -0.90 | External closing pair is T 1309-A 2653 |
| Helix | -9.50 | 9 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 1310-A 2652 |
| Stack | -1.30 | External closing pair is G 1312-T 2651 |
| Helix | -1.30 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1313-T 2650 |
| Stack | -2.40 | External closing pair is T 1315-A 2648 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1316-G 2647 |
| Stack | -2.20 | External closing pair is A 1318-T 2645 |
| Helix | -2.20 | 2 base pairs. |
| Multi-loop | 1.80 | External closing pair is C 1319-G 2644 14 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 2624-T 2642 |
| Stack | -1.30 | External closing pair is G 2625-T 2641 |
| Stack | -2.10 | External closing pair is A 2626-T 2640 |
| Stack | -3.40 | External closing pair is G 2627-C 2639 |
| Stack | -2.40 | External closing pair is C 2628-G 2638 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 4.40 | Closing pair is G 2629-C 2637 |
| Stack | -0.90 | External closing pair is T 1322-A 2612 |
| Stack | -0.90 | External closing pair is T 1323-A 2611 |
| Stack | -1.30 | External closing pair is T 1324-A 2610 |
| Stack | -2.20 | External closing pair is A 1325-T 2609 |
| Helix | -5.30 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is C 1326-G 2608 |
| Stack | -1.40 | External closing pair is C 1328-G 2605 |
| Stack | -1.40 | External closing pair is G 1329-T 2604 |
| Stack | -1.30 | External closing pair is T 1330-A 2603 |
| Stack | -1.00 | External closing pair is T 1331-G 2602 |
| Stack | -2.20 | External closing pair is A 1332-T 2601 |
| Stack | -3.30 | External closing pair is C 1333-G 2600 |
| Stack | -2.10 | External closing pair is C 1334-G 2599 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 1335-T 2598 28 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -0.50 | External closing pair is G 1360-T 2137 |
| Stack | -2.50 | External closing pair is G 1361-T 2136 |
| Stack | -2.10 | External closing pair is C 1362-G 2135 |
| Stack | -0.90 | External closing pair is A 1363-T 2134 |
| Stack | -1.40 | External closing pair is A 1364-T 2133 |
| Stack | -1.50 | External closing pair is T 1365-G 2132 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 3.80 | External closing pair is C 1366-G 2131 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1386-A 2130 |
| Stack | -2.40 | External closing pair is T 1387-A 2129 |
| Stack | -3.30 | External closing pair is C 1388-G 2128 |
| Stack | -2.40 | External closing pair is C 1389-G 2127 |
| Stack | -2.20 | External closing pair is G 1390-C 2126 |
| Stack | -2.10 | External closing pair is T 1391-A 2125 |
| Helix | -13.30 | 7 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1392-C 2124 |
| Stack | -0.90 | External closing pair is T 1393-A 2122 |
| Stack | -2.10 | External closing pair is T 1394-A 2121 |
| Stack | -3.40 | External closing pair is G 1395-C 2120 |
| Stack | -3.30 | External closing pair is C 1396-G 2119 |
| Stack | -2.10 | External closing pair is C 1397-G 2118 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 1398-T 2117 14 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2032-A 2110 |
| Stack | -2.20 | External closing pair is G 2033-C 2109 |
| Stack | -2.10 | External closing pair is T 2034-A 2108 |
| Stack | -2.40 | External closing pair is G 2035-C 2107 |
| Helix | -8.80 | 5 base pairs. |
| Multi-loop | 1.90 | External closing pair is A 2036-T 2106 19 ss bases & 4 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -3.30 | External closing pair is G 2047-C 2057 |
| Stack | -3.40 | External closing pair is G 2048-C 2056 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 2049-G 2055 |
| Stack | -2.10 | External closing pair is C 1992-G 2026 |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -12.10 | 10 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.40 | External closing pair is G 1401-C 1990 |
| Stack | -2.10 | External closing pair is C 1402-G 1989 |
| Stack | -0.90 | External closing pair is A 1403-T 1988 |
| Stack | -1.10 | External closing pair is A 1404-T 1987 |
| Helix | -7.50 | 5 base pairs. |
| Multi-loop | 4.40 | External closing pair is T 1405-A 1986 6 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1652-A 1984 |
| Stack | -0.90 | External closing pair is T 1653-A 1983 |
| Stack | -2.40 | External closing pair is T 1654-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is C 1655-G 1981 |
| Stack | -2.40 | External closing pair is G 1657-C 1979 |
| Stack | -0.90 | External closing pair is A 1658-T 1978 |
| Stack | -0.90 | External closing pair is A 1659-T 1977 |
| Stack | -2.20 | External closing pair is A 1660-T 1976 |
| Stack | -2.10 | External closing pair is C 1661-G 1975 |
| Helix | -8.50 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1662-A 1974 9 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 1664-C 1949 |
| Stack | -0.90 | External closing pair is A 1665-T 1948 |
| Stack | -0.60 | External closing pair is A 1666-T 1947 |
| Helix | -3.90 | 4 base pairs. |
| Interior loop | 4.00 | External closing pair is G 1667-T 1946 |
| Stack | -2.10 | External closing pair is T 1670-A 1944 |
| Stack | -3.40 | External closing pair is G 1671-C 1943 |
| Stack | -3.30 | External closing pair is C 1672-G 1942 |
| Stack | -2.10 | External closing pair is C 1673-G 1941 |
| Helix | -10.90 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 1674-A 1940 |
| Stack | -0.90 | External closing pair is T 1677-A 1939 |
| Stack | -2.40 | External closing pair is T 1678-A 1938 |
| Stack | -2.10 | External closing pair is C 1679-G 1937 |
| Stack | -1.30 | External closing pair is T 1680-A 1936 |
| Stack | -1.50 | External closing pair is T 1681-G 1935 |
| Stack | -2.10 | External closing pair is C 1682-G 1934 |
| Stack | -1.00 | External closing pair is T 1683-A 1933 |
| Stack | -0.50 | External closing pair is G 1684-T 1932 |
| Stack | -2.50 | External closing pair is G 1685-T 1931 |
| Helix | -14.30 | 10 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 1686-G 1930 24 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1873-T 1927 |
| Stack | -0.90 | External closing pair is A 1874-T 1926 |
| Stack | -2.20 | External closing pair is A 1875-T 1925 |
| Stack | -2.10 | External closing pair is C 1876-G 1924 |
| Stack | -1.40 | External closing pair is T 1877-G 1923 |
| Stack | -3.40 | External closing pair is G 1878-C 1922 |
| Helix | -10.90 | 7 base pairs. |
| Interior loop | 4.80 | External closing pair is C 1879-G 1921 |
| Stack | -2.40 | External closing pair is T 1888-A 1910 |
| Stack | -3.30 | External closing pair is C 1889-G 1909 |
| Stack | -2.10 | External closing pair is C 1890-G 1908 |
| Stack | -1.30 | External closing pair is T 1891-A 1907 |
| Helix | -9.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1892-G 1906 |
| Stack | -1.30 | External closing pair is G 1894-T 1904 |
| Helix | -1.30 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is A 1895-T 1903 |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -2.20 | External closing pair is A 1411-T 1651 |
| Stack | -2.10 | External closing pair is C 1412-G 1650 |
| Stack | -2.40 | External closing pair is T 1413-A 1649 |
| Helix | -6.70 | 4 base pairs. |
| Multi-loop | 2.30 | External closing pair is C 1414-G 1648 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1634-T 1647 |
| Stack | -1.10 | External closing pair is A 1635-T 1646 |
| Stack | -2.40 | External closing pair is T 1636-A 1645 |
| Stack | -2.40 | External closing pair is C 1637-G 1644 |
| Helix | -6.80 | 5 base pairs. |
| Hairpin loop | 0.70 | Closing pair is G 1638-C 1643 |
| Stack | -3.40 | External closing pair is G 1416-C 1630 |
| Stack | -2.10 | External closing pair is C 1417-G 1629 |
| Stack | -2.10 | External closing pair is T 1418-A 1628 |
| Stack | -2.40 | External closing pair is G 1419-C 1627 |
| Stack | -0.90 | External closing pair is A 1420-T 1626 |
| Helix | -10.90 | 6 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 1421-T 1625 29 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -2.40 | External closing pair is G 1438-C 1590 |
| Stack | -0.90 | External closing pair is A 1439-T 1589 |
| Stack | -2.10 | External closing pair is A 1440-T 1588 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 1441-C 1587 |
| Stack | -0.90 | External closing pair is T 1443-A 1586 |
| Stack | -2.40 | External closing pair is T 1444-A 1585 |
| Helix | -3.30 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 1445-G 1584 |
| Stack | -2.10 | External closing pair is T 1446-A 1582 |
| Stack | -2.20 | External closing pair is G 1447-C 1581 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 2.90 | External closing pair is T 1448-A 1580 |
| Stack | -2.40 | External closing pair is T 1449-A 1578 |
| Stack | -2.10 | External closing pair is C 1450-G 1577 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is T 1451-G 1576 24 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 1519-A 1565 |
| Stack | -0.90 | External closing pair is T 1520-A 1564 |
| Stack | -2.10 | External closing pair is T 1521-A 1563 |
| Stack | -3.40 | External closing pair is G 1522-C 1562 |
| Stack | -2.10 | External closing pair is C 1523-G 1561 |
| Stack | -2.10 | External closing pair is A 1524-T 1560 |
| Stack | -2.50 | External closing pair is G 1525-C 1559 |
| Helix | -14.00 | 8 base pairs. |
| Bulge loop | 4.20 | External closing pair is T 1526-G 1558 |
| Stack | -1.00 | External closing pair is T 1527-G 1554 |
| Stack | -2.10 | External closing pair is A 1528-T 1553 |
| Stack | -2.20 | External closing pair is G 1529-C 1552 |
| Stack | -1.30 | External closing pair is T 1530-A 1551 |
| Helix | -6.60 | 5 base pairs. |
| Hairpin loop | 6.00 | Closing pair is A 1531-T 1550 |
| Stack | -3.40 | External closing pair is G 1499-C 1517 |
| Stack | -2.10 | External closing pair is C 1500-G 1516 |
| Stack | -0.90 | External closing pair is A 1501-T 1515 |
| Stack | -0.60 | External closing pair is A 1502-T 1514 |
| Helix | -7.00 | 5 base pairs. |
| Hairpin loop | 5.30 | Closing pair is G 1503-T 1513 |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -1.10 | External closing pair is A 1373-T 1382 |
| Stack | -2.40 | External closing pair is T 1374-A 1381 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 1375-G 1380 |
| Stack | -2.20 | External closing pair is G 1204-C 1289 |
| Stack | -1.00 | External closing pair is T 1205-A 1288 |
| Stack | -2.10 | External closing pair is G 1206-T 1287 |
| Stack | -3.40 | External closing pair is G 1207-C 1286 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | 4.30 | External closing pair is C 1208-G 1285 |
| Stack | -2.40 | External closing pair is T 1215-A 1274 |
| Stack | -2.10 | External closing pair is C 1216-G 1273 |
| Stack | -2.10 | External closing pair is T 1217-A 1272 |
| Helix | -6.60 | 4 base pairs. |
| Interior loop | 0.40 | External closing pair is G 1218-C 1271 |
| Stack | -2.40 | External closing pair is G 1220-C 1269 |
| Stack | -0.90 | External closing pair is A 1221-T 1268 |
| Stack | -0.90 | External closing pair is A 1222-T 1267 |
| Stack | -0.90 | External closing pair is A 1223-T 1266 |
| Helix | -5.10 | 5 base pairs. |
| Bulge loop | 1.60 | External closing pair is A 1224-T 1265 |
| Stack | -2.10 | External closing pair is C 1226-G 1264 |
| Stack | -1.10 | External closing pair is A 1227-T 1263 |
| Helix | -3.20 | 3 base pairs. |
| Interior loop | 4.50 | External closing pair is T 1228-A 1262 |
| Stack | -0.90 | External closing pair is T 1235-A 1256 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -8.30 | 6 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 54-A 1084 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.30 | External closing pair is G 55-C 1083 10 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1015-G 1075 |
| Stack | -1.00 | External closing pair is T 1016-G 1074 |
| Stack | -2.10 | External closing pair is A 1017-T 1073 |
| Stack | -2.50 | External closing pair is G 1018-C 1072 |
| Stack | -0.60 | External closing pair is T 1019-G 1071 |
| Stack | -0.90 | External closing pair is T 1020-A 1070 |
| Stack | -1.30 | External closing pair is T 1021-A 1069 |
| Helix | -10.50 | 8 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1022-G 1068 14 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1039-C 1055 |
| Helix | -3.40 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is C 1040-G 1054 |
| Stack | -2.40 | External closing pair is G 1024-C 1037 |
| Stack | -2.20 | External closing pair is A 1025-T 1036 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 3.60 | Closing pair is C 1026-G 1035 |
| Stack | -1.30 | External closing pair is T 57-A 1012 |
| Stack | -0.60 | External closing pair is A 58-T 1011 |
| Stack | -0.50 | External closing pair is G 59-T 1010 |
| Stack | -1.40 | External closing pair is G 60-T 1009 |
| Helix | -3.80 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is T 61-A 1008 |
| Stack | -1.30 | External closing pair is T 63-A 1006 |
| Stack | -2.10 | External closing pair is A 64-T 1005 |
| Helix | -3.40 | 3 base pairs. |
| Bulge loop | 2.30 | External closing pair is G 65-C 1004 |
| Stack | -2.50 | External closing pair is G 67-T 1003 |
| Stack | -1.40 | External closing pair is C 68-G 1002 |
| Stack | -1.30 | External closing pair is G 69-T 1001 |
| Stack | -0.60 | External closing pair is A 70-T 1000 |
| Stack | -1.30 | External closing pair is G 71-T 999 |
| Stack | -1.10 | External closing pair is A 72-T 998 |
| Stack | -1.30 | External closing pair is T 73-A 997 |
| Stack | -2.20 | External closing pair is A 74-T 996 |
| Helix | -11.70 | 9 base pairs. |
| Bulge loop | 4.80 | External closing pair is C 75-G 995 |
| Stack | -3.30 | External closing pair is C 76-G 985 |
| Stack | -2.10 | External closing pair is C 77-G 984 |
| Stack | -0.90 | External closing pair is A 78-T 983 |
| Stack | -1.10 | External closing pair is A 79-T 982 |
| Stack | -2.40 | External closing pair is T 80-A 981 |
| Stack | -3.30 | External closing pair is C 81-G 980 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.00 | External closing pair is C 82-G 979 22 ss bases & 5 closing helices. |
| Stack | -2.10 | External closing pair is G 949-T 974 |
| Stack | -2.40 | External closing pair is G 950-C 973 |
| Stack | -1.10 | External closing pair is A 951-T 972 |
| Stack | -2.10 | External closing pair is T 952-A 971 |
| Stack | -2.20 | External closing pair is G 953-C 970 |
| Helix | -9.90 | 6 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 954-A 969 |
| Stack | -2.10 | External closing pair is C 956-G 968 |
| Stack | -1.30 | External closing pair is T 957-A 967 |
| Helix | -3.40 | 3 base pairs. |
| Hairpin loop | 5.60 | Closing pair is A 958-T 966 |
| Stack | -2.40 | External closing pair is G 898-C 945 |
| Stack | -0.90 | External closing pair is A 899-T 944 |
| Stack | -2.10 | External closing pair is A 900-T 943 |
| Stack | -3.30 | External closing pair is G 901-C 942 |
| Helix | -8.70 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 902-C 941 |
| Stack | -3.40 | External closing pair is G 904-C 939 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 905-G 938 |
| Stack | -1.30 | External closing pair is T 911-A 932 |
| Stack | -0.90 | External closing pair is A 912-T 931 |
| Helix | -2.20 | 3 base pairs. |
| Hairpin loop | 5.90 | Closing pair is A 913-T 930 |
| Stack | -2.10 | External closing pair is T 882-A 896 |
| Stack | -2.40 | External closing pair is G 883-C 895 |
| Stack | -0.60 | External closing pair is A 884-T 894 |
| Stack | -0.50 | External closing pair is G 885-T 893 |
| Stack | -2.50 | External closing pair is G 886-T 892 |
| Helix | -8.10 | 6 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 887-G 891 |
| Stack | -2.10 | External closing pair is T 90-A 874 |
| Stack | -2.20 | External closing pair is G 91-C 873 |
| Stack | -0.90 | External closing pair is T 92-A 872 |
| Stack | -2.10 | External closing pair is T 93-A 871 |
| Stack | -2.50 | External closing pair is G 94-C 870 |
| Stack | -0.60 | External closing pair is T 95-G 869 |
| Helix | -10.40 | 7 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 96-A 868 |
| Stack | -2.50 | External closing pair is G 97-T 866 |
| Stack | -2.10 | External closing pair is C 98-G 865 |
| Stack | -1.40 | External closing pair is T 99-G 864 |
| Stack | -2.20 | External closing pair is G 100-C 863 |
| Stack | -0.90 | External closing pair is T 101-A 862 |
| Helix | -9.10 | 6 base pairs. |
| Multi-loop | 4.80 | External closing pair is T 102-A 861 14 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 820-A 851 |
| Stack | -1.40 | External closing pair is C 821-G 850 |
| Helix | -3.80 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is G 822-T 849 |
| Stack | -1.30 | External closing pair is T 824-A 847 |
| Stack | -2.20 | External closing pair is A 825-T 846 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 3.40 | External closing pair is C 826-G 845 |
| Stack | -0.90 | External closing pair is A 830-T 843 |
| Stack | -1.10 | External closing pair is A 831-T 842 |
| Stack | -0.90 | External closing pair is T 832-A 841 |
| Stack | -2.40 | External closing pair is T 833-A 840 |
| Helix | -5.30 | 5 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 834-G 839 |
| Stack | -2.40 | External closing pair is G 108-C 819 |
| Stack | -0.60 | External closing pair is A 109-T 818 |
| Stack | -1.40 | External closing pair is G 110-T 817 |
| Stack | -2.10 | External closing pair is T 111-A 816 |
| Stack | -3.40 | External closing pair is G 112-C 815 |
| Stack | -3.30 | External closing pair is C 113-G 814 |
| Stack | -2.40 | External closing pair is C 114-G 813 |
| Stack | -3.40 | External closing pair is G 115-C 812 |
| Helix | -19.00 | 9 base pairs. |
| Multi-loop | 1.90 | External closing pair is C 116-G 811 4 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 800-T 810 |
| Stack | -2.10 | External closing pair is A 801-T 809 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 3.70 | Closing pair is G 802-C 808 |
| Stack | -3.40 | External closing pair is G 118-C 796 |
| Stack | -2.10 | External closing pair is C 119-G 795 |
| Stack | -0.90 | External closing pair is T 120-A 794 |
| Stack | -1.30 | External closing pair is T 121-A 793 |
| Helix | -7.70 | 5 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 122-T 792 17 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 763-G 778 |
| Stack | -1.30 | External closing pair is T 764-A 777 |
| Stack | -2.20 | External closing pair is A 765-T 776 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.70 | Closing pair is C 766-G 775 |
| Stack | -2.40 | External closing pair is T 127-A 762 |
| Stack | -3.30 | External closing pair is C 128-G 761 |
| Stack | -1.40 | External closing pair is C 129-G 760 |
| Helix | -7.10 | 4 base pairs. |
| Bulge loop | 2.40 | External closing pair is G 130-T 759 |
| Stack | -2.10 | External closing pair is T 131-A 757 |
| Stack | -2.40 | External closing pair is G 132-C 756 |
| Stack | -2.20 | External closing pair is A 133-T 755 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is C 134-G 754 |
| Stack | -2.10 | External closing pair is C 136-G 753 |
| Stack | -0.90 | External closing pair is A 137-T 752 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.00 | External closing pair is A 138-T 751 |
| Stack | -2.10 | External closing pair is C 140-G 749 |
| Stack | -0.90 | External closing pair is T 141-A 748 |
| Stack | -1.30 | External closing pair is T 142-A 747 |
| Helix | -4.30 | 4 base pairs. |
| Interior loop | 6.00 | External closing pair is A 143-T 746 |
| Stack | -3.30 | External closing pair is G 155-C 741 |
| Stack | -2.40 | External closing pair is G 156-C 740 |
| Stack | -0.90 | External closing pair is A 157-T 739 |
| Stack | -2.10 | External closing pair is A 158-T 738 |
| Stack | -3.40 | External closing pair is G 159-C 737 |
| Stack | -2.10 | External closing pair is C 160-G 736 |
| Stack | -1.40 | External closing pair is T 161-G 735 |
| Stack | -3.30 | External closing pair is G 162-C 734 |
| Helix | -18.90 | 9 base pairs. |
| Interior loop | 2.00 | External closing pair is G 163-C 733 |
| Stack | -2.40 | External closing pair is T 166-A 730 |
| Stack | -2.10 | External closing pair is C 167-G 729 |
| Helix | -4.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 168-A 728 |
| Stack | -2.40 | External closing pair is T 171-A 727 |
| Stack | -2.10 | External closing pair is C 172-G 726 |
| Stack | -0.60 | External closing pair is A 173-T 725 |
| Stack | -1.40 | External closing pair is G 174-T 724 |
| Stack | -1.30 | External closing pair is T 175-A 723 |
| Helix | -7.80 | 6 base pairs. |
| Interior loop | 0.00 | External closing pair is A 176-T 722 |
| Stack | -2.10 | External closing pair is C 179-G 719 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 2.70 | External closing pair is T 180-A 718 34 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 611-C 713 |
| Stack | -0.90 | External closing pair is T 612-A 712 |
| Stack | -2.10 | External closing pair is T 613-A 711 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 614-C 710 14 ss bases & 4 closing helices. |
| Stack | -1.00 | External closing pair is T 681-A 707 |
| Stack | -2.50 | External closing pair is G 682-T 706 |
| Stack | -2.10 | External closing pair is C 683-G 705 |
| Helix | -5.60 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 684-T 704 |
| Stack | -3.40 | External closing pair is G 686-C 703 |
| Stack | -2.40 | External closing pair is C 687-G 702 |
| Helix | -5.80 | 3 base pairs. |
| Bulge loop | 1.40 | External closing pair is G 688-C 701 |
| Stack | -1.10 | External closing pair is A 690-T 700 |
| Helix | -1.10 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 691-A 699 |
| Stack | -2.40 | External closing pair is G 633-C 674 |
| Stack | -0.90 | External closing pair is A 634-T 673 |
| Stack | -0.90 | External closing pair is A 635-T 672 |
| Helix | -4.20 | 4 base pairs. |
| Interior loop | 3.00 | External closing pair is A 636-T 671 |
| Stack | -1.40 | External closing pair is C 639-G 667 |
| Stack | -2.10 | External closing pair is G 640-T 666 |
| Stack | -2.40 | External closing pair is G 641-C 665 |
| Helix | -5.90 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 642-T 664 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is T 617-A 628 |
| Stack | -2.20 | External closing pair is G 618-C 627 |
| Stack | -1.30 | External closing pair is T 619-A 626 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 620-G 625 |
| Stack | -1.30 | External closing pair is T 188-A 587 |
| Stack | -0.90 | External closing pair is A 189-T 586 |
| Stack | -2.10 | External closing pair is A 190-T 585 |
| Stack | -3.40 | External closing pair is G 191-C 584 |
| Stack | -2.10 | External closing pair is C 192-G 583 |
| Helix | -9.80 | 6 base pairs. |
| Bulge loop | 4.10 | External closing pair is A 193-T 582 |
| Stack | -3.40 | External closing pair is G 198-C 581 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 2.50 | External closing pair is C 199-G 580 |
| Stack | -3.30 | External closing pair is G 201-C 577 |
| Stack | -2.40 | External closing pair is G 202-C 576 |
| Stack | -1.10 | External closing pair is A 203-T 575 |
| Stack | -2.10 | External closing pair is T 204-A 574 |
| Stack | -2.40 | External closing pair is G 205-C 573 |
| Helix | -11.30 | 6 base pairs. |
| Multi-loop | 4.40 | External closing pair is A 206-T 572 3 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 539-T 570 |
| Stack | -0.90 | External closing pair is A 540-T 569 |
| Stack | -2.20 | External closing pair is A 541-T 568 |
| Stack | -1.40 | External closing pair is C 542-G 567 |
| Stack | -1.30 | External closing pair is G 543-T 566 |
| Stack | -0.60 | External closing pair is A 544-T 565 |
| Helix | -7.30 | 7 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 545-T 564 |
| Stack | -2.40 | External closing pair is C 546-G 562 |
| Stack | -2.40 | External closing pair is G 547-C 561 |
| Stack | -0.90 | External closing pair is A 548-T 560 |
| Stack | -1.40 | External closing pair is A 549-T 559 |
| Stack | -0.60 | External closing pair is T 550-G 558 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 551-A 557 |
| Stack | -2.10 | External closing pair is T 209-A 538 |
| Stack | -2.20 | External closing pair is G 210-C 537 |
| Stack | -0.90 | External closing pair is T 211-A 536 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is T 212-A 535 |
| Stack | -2.40 | External closing pair is G 214-C 533 |
| Stack | -0.90 | External closing pair is A 215-T 532 |
| Stack | -0.90 | External closing pair is A 216-T 531 |
| Stack | -0.90 | External closing pair is A 217-T 530 |
| Helix | -5.10 | 5 base pairs. |
| Interior loop | 1.70 | External closing pair is A 218-T 529 |
| Stack | -2.10 | External closing pair is T 220-A 527 |
| Stack | -3.40 | External closing pair is G 221-C 526 |
| Helix | -5.50 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is C 222-G 525 18 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 506-A 524 |
| Stack | -1.30 | External closing pair is T 507-A 523 |
| Stack | -1.00 | External closing pair is T 508-G 522 |
| Stack | -2.20 | External closing pair is A 509-T 521 |
| Stack | -3.30 | External closing pair is C 510-G 520 |
| Stack | -1.40 | External closing pair is C 511-G 519 |
| Helix | -10.10 | 7 base pairs. |
| Hairpin loop | 5.80 | Closing pair is G 512-T 518 |
| Stack | -1.00 | External closing pair is T 234-G 498 |
| Stack | -2.10 | External closing pair is A 235-T 497 |
| Stack | -3.30 | External closing pair is G 236-C 496 |
| Stack | -2.20 | External closing pair is G 237-C 495 |
| Stack | -2.40 | External closing pair is T 238-A 494 |
| Stack | -2.10 | External closing pair is C 239-G 493 |
| Helix | -13.10 | 7 base pairs. |
| Multi-loop | 1.60 | External closing pair is T 240-G 492 20 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 261-C 474 |
| Stack | -0.90 | External closing pair is T 262-A 473 |
| Helix | -3.10 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 263-A 472 |
| Stack | -2.10 | External closing pair is C 265-G 470 |
| Stack | -2.40 | External closing pair is T 266-A 469 |
| Stack | -2.10 | External closing pair is C 267-G 468 |
| Stack | -0.60 | External closing pair is A 268-T 467 |
| Helix | -7.20 | 5 base pairs. |
| Bulge loop | 1.30 | External closing pair is G 269-T 466 |
| Stack | -2.10 | External closing pair is C 270-G 464 |
| Stack | -2.40 | External closing pair is T 271-A 463 |
| Stack | -2.10 | External closing pair is C 272-G 462 |
| Stack | -1.00 | External closing pair is T 273-G 461 |
| Helix | -7.60 | 5 base pairs. |
| Interior loop | 2.90 | External closing pair is A 274-T 460 |
| Stack | -3.30 | External closing pair is C 281-G 452 |
| Stack | -2.40 | External closing pair is C 282-G 451 |
| Helix | -5.70 | 3 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 283-C 450 24 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is A 422-T 444 |
| Stack | -2.40 | External closing pair is G 423-C 443 |
| Stack | -1.40 | External closing pair is A 424-T 442 |
| Stack | -1.00 | External closing pair is T 425-G 441 |
| Stack | -2.20 | External closing pair is A 426-T 440 |
| Helix | -9.10 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is C 427-G 439 |
| Stack | -2.10 | External closing pair is C 299-G 417 |
| Stack | -1.30 | External closing pair is T 300-A 416 |
| Stack | -0.60 | External closing pair is T 301-G 415 |
| Stack | -0.90 | External closing pair is T 302-A 414 |
| Stack | -2.40 | External closing pair is T 303-A 413 |
| Stack | -2.10 | External closing pair is C 304-G 412 |
| Stack | -1.40 | External closing pair is A 305-T 411 |
| Stack | -0.60 | External closing pair is T 306-G 410 |
| Helix | -11.40 | 9 base pairs. |
| Interior loop | 4.60 | External closing pair is T 307-A 409 |
| Stack | -1.00 | External closing pair is T 314-A 405 |
| Helix | -1.00 | 2 base pairs. |
| Interior loop | 1.40 | External closing pair is G 315-T 404 |
| Stack | -1.30 | External closing pair is T 318-A 401 |
| Stack | -2.20 | External closing pair is A 319-T 400 |
| Stack | -3.30 | External closing pair is C 320-G 399 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | -0.20 | External closing pair is C 321-G 398 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 383-C 395 |
| Stack | -1.00 | External closing pair is T 384-A 394 |
| Stack | -1.40 | External closing pair is G 385-T 393 |
| Helix | -4.60 | 4 base pairs. |
| Hairpin loop | 5.50 | Closing pair is T 386-A 392 |
| Stack | -2.20 | External closing pair is G 326-C 372 |
| Stack | -1.30 | External closing pair is T 327-A 371 |
| Helix | -3.50 | 3 base pairs. |
| Interior loop | 1.70 | External closing pair is T 328-G 370 |
| Stack | -2.40 | External closing pair is T 330-A 368 |
| Stack | -2.10 | External closing pair is C 331-G 367 |
| Stack | -0.90 | External closing pair is A 332-T 366 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 3.40 | External closing pair is A 333-T 365 |
| Stack | -0.90 | External closing pair is A 337-T 361 |
| Stack | -2.10 | External closing pair is A 338-T 360 |
| Stack | -3.30 | External closing pair is G 339-C 359 |
| Helix | -6.30 | 4 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 340-C 358 |
| Stack | -2.10 | External closing pair is C 342-G 357 |
| Stack | -0.90 | External closing pair is A 343-T 356 |
| Helix | -3.00 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 344-T 355 |
| Stack | -2.10 | External closing pair is C 242-G 258 |
| Stack | 0.30 | External closing pair is T 243-G 257 |
| Stack | -1.40 | External closing pair is G 244-T 256 |
| Stack | -2.10 | External closing pair is T 245-A 255 |
| Stack | -2.20 | External closing pair is G 246-C 254 |
| Helix | -7.50 | 6 base pairs. |
| Hairpin loop | 5.60 | Closing pair is T 247-A 253 |
Structure 46
seq.txt
ΔG = -797.80
| Structural element | δG | Information |
|---|---|---|
| External loop | -1.20 | 25 ss bases & 2 closing helices. |
| Stack | -2.10 | External closing pair is C 3114-G 3127 |
| Stack | -2.10 | External closing pair is T 3115-A 3126 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 3116-C 3125 |
| Stack | -3.30 | External closing pair is C 10-G 3108 |
| Stack | -3.30 | External closing pair is C 11-G 3107 |
| Stack | -2.10 | External closing pair is C 12-G 3106 |
| Stack | -0.90 | External closing pair is T 13-A 3105 |
| Helix | -9.60 | 5 base pairs. |
| Multi-loop | 3.10 | External closing pair is T 14-A 3104 10 ss bases & 3 closing helices. |
| Stack | -1.40 | External closing pair is A 29-T 3099 |
| Stack | -0.60 | External closing pair is T 30-G 3098 |
| Stack | -0.90 | External closing pair is T 31-A 3097 |
| Stack | -2.10 | External closing pair is T 32-A 3096 |
| Stack | -3.30 | External closing pair is G 33-C 3095 |
| Stack | -2.20 | External closing pair is G 34-C 3094 |
| Helix | -10.50 | 7 base pairs. |
| Multi-loop | 1.90 | External closing pair is T 35-A 3093 14 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 2979-C 3091 |
| Stack | -2.10 | External closing pair is T 2980-A 3090 |
| Helix | -4.30 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2981-C 3089 |
| Stack | -3.40 | External closing pair is G 2983-C 3088 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.20 | External closing pair is C 2984-G 3087 |
| Stack | -2.40 | External closing pair is T 2987-A 3083 |
| Helix | -2.40 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 2988-G 3082 |
| Stack | -0.90 | External closing pair is T 2989-A 3080 |
| Stack | -2.10 | External closing pair is T 2990-A 3079 |
| Stack | -3.30 | External closing pair is G 2991-C 3078 |
| Stack | -3.40 | External closing pair is G 2992-C 3077 |
| Stack | -2.10 | External closing pair is C 2993-G 3076 |
| Helix | -11.80 | 6 base pairs. |
| Multi-loop | 0.40 | External closing pair is T 2994-A 3075 7 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 3062-C 3072 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 5.40 | Closing pair is T 3063-A 3071 |
| Stack | -2.20 | External closing pair is G 2996-C 3057 |
| Stack | -2.10 | External closing pair is T 2997-A 3056 |
| Stack | -2.40 | External closing pair is G 2998-C 3055 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is A 2999-T 3054 |
| Stack | -2.20 | External closing pair is G 3003-C 3053 |
| Stack | -2.40 | External closing pair is T 3004-A 3052 |
| Helix | -4.60 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is C 3005-G 3051 |
| Stack | -2.10 | External closing pair is T 3008-A 3047 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 3009-C 3046 |
| Stack | -3.40 | External closing pair is G 3011-C 3045 |
| Stack | -2.10 | External closing pair is C 3012-G 3044 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 5.40 | External closing pair is T 3013-A 3043 |
| Stack | -0.90 | External closing pair is T 3020-A 3042 |
| Stack | -2.10 | External closing pair is T 3021-A 3041 |
| Helix | -3.00 | 3 base pairs. |
| Bulge loop | 1.60 | External closing pair is G 3022-C 3040 |
| Stack | -1.00 | External closing pair is T 3024-A 3039 |
| Stack | -2.50 | External closing pair is G 3025-T 3038 |
| Stack | -3.30 | External closing pair is C 3026-G 3037 |
| Stack | -1.40 | External closing pair is C 3027-G 3036 |
| Stack | -2.10 | External closing pair is G 3028-T 3035 |
| Helix | -10.30 | 6 base pairs. |
| Hairpin loop | 4.60 | Closing pair is G 3029-C 3034 |
| Stack | -2.10 | External closing pair is A 38-T 2967 |
| Stack | -3.40 | External closing pair is G 39-C 2966 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 2.00 | External closing pair is C 40-G 2965 |
| Stack | -0.90 | External closing pair is T 44-A 2961 |
| Stack | -2.10 | External closing pair is T 45-A 2960 |
| Stack | -3.40 | External closing pair is G 46-C 2959 |
| Stack | -2.10 | External closing pair is C 47-G 2958 |
| Stack | -0.60 | External closing pair is T 48-G 2957 |
| Helix | -9.10 | 6 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 49-A 2956 |
| Stack | -3.40 | External closing pair is G 50-C 2954 |
| Stack | -2.10 | External closing pair is C 51-G 2953 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 3.80 | External closing pair is A 52-T 2952 |
| Stack | -2.10 | External closing pair is T 54-A 2949 |
| Stack | -3.40 | External closing pair is G 55-C 2948 |
| Stack | -2.10 | External closing pair is C 56-G 2947 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 57-A 2946 |
| Stack | -2.10 | External closing pair is A 58-T 2943 |
| Stack | -3.30 | External closing pair is G 59-C 2942 |
| Stack | -2.20 | External closing pair is G 60-C 2941 |
| Stack | -0.90 | External closing pair is T 61-A 2940 |
| Stack | -1.30 | External closing pair is T 62-A 2939 |
| Stack | -1.00 | External closing pair is T 63-G 2938 |
| Stack | -2.10 | External closing pair is A 64-T 2937 |
| Stack | -2.20 | External closing pair is G 65-C 2936 |
| Stack | -2.10 | External closing pair is T 66-A 2935 |
| Helix | -17.20 | 10 base pairs. |
| Multi-loop | 2.50 | External closing pair is G 67-C 2934 12 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 2698-C 2932 |
| Stack | -2.20 | External closing pair is G 2699-C 2931 |
| Stack | -2.10 | External closing pair is T 2700-A 2930 |
| Helix | -7.60 | 4 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 2701-C 2929 |
| Interior loop | -0.20 | External closing pair is G 2702-C 2927 |
| Stack | -1.50 | External closing pair is T 2705-G 2924 |
| Stack | -2.10 | External closing pair is C 2706-G 2923 |
| Helix | -3.60 | 3 base pairs. |
| Multi-loop | 0.60 | External closing pair is A 2707-T 2922 4 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2769-C 2920 |
| Stack | -0.90 | External closing pair is A 2770-T 2919 |
| Stack | -2.20 | External closing pair is A 2771-T 2918 |
| Stack | -2.40 | External closing pair is C 2772-G 2917 |
| Stack | -2.50 | External closing pair is G 2773-C 2916 |
| Stack | -1.50 | External closing pair is T 2774-G 2915 |
| Stack | -2.40 | External closing pair is C 2775-G 2914 |
| Stack | -2.40 | External closing pair is G 2776-C 2913 |
| Helix | -16.70 | 9 base pairs. |
| Multi-loop | 3.80 | External closing pair is A 2777-T 2912 6 ss bases & 3 closing helices. |
| Stack | -1.50 | External closing pair is G 2869-C 2911 |
| Stack | -0.50 | External closing pair is G 2870-T 2910 |
| Stack | -2.10 | External closing pair is G 2871-T 2909 |
| Stack | -1.50 | External closing pair is G 2872-C 2908 |
| Stack | -1.40 | External closing pair is G 2873-T 2907 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 0.90 | External closing pair is T 2874-A 2906 |
| Stack | -2.50 | External closing pair is G 2878-C 2902 |
| Helix | -2.50 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 2879-G 2901 |
| Stack | -2.10 | External closing pair is T 2882-A 2899 |
| Stack | -3.30 | External closing pair is G 2883-C 2898 |
| Helix | -5.40 | 3 base pairs. |
| Interior loop | -0.10 | External closing pair is G 2884-C 2897 |
| Stack | -3.40 | External closing pair is G 2886-C 2895 |
| Stack | -3.30 | External closing pair is C 2887-G 2894 |
| Helix | -6.70 | 3 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2888-G 2893 |
| Stack | -3.30 | External closing pair is C 2783-G 2867 |
| Stack | -2.10 | External closing pair is C 2784-G 2866 |
| Stack | -0.90 | External closing pair is A 2785-T 2865 |
| Helix | -6.30 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is A 2786-T 2864 |
| Stack | -1.40 | External closing pair is T 2788-G 2862 |
| Stack | -2.20 | External closing pair is G 2789-C 2861 |
| Stack | -1.30 | External closing pair is T 2790-A 2860 |
| Stack | -1.40 | External closing pair is A 2791-T 2859 |
| Helix | -6.30 | 5 base pairs. |
| Bulge loop | 2.80 | External closing pair is T 2792-G 2858 |
| Stack | -0.90 | External closing pair is A 2793-T 2856 |
| Stack | -2.20 | External closing pair is A 2794-T 2855 |
| Stack | -2.10 | External closing pair is C 2795-G 2854 |
| Stack | -0.90 | External closing pair is T 2796-A 2853 |
| Helix | -6.10 | 5 base pairs. |
| Interior loop | -2.90 | External closing pair is T 2797-A 2852 |
| Stack | -1.10 | External closing pair is A 2800-T 2849 |
| Helix | -1.10 | 2 base pairs. |
| Bulge loop | 1.70 | External closing pair is T 2801-A 2848 |
| Stack | -2.40 | External closing pair is G 2802-C 2846 |
| Helix | -2.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2803-T 2845 |
| Stack | -3.30 | External closing pair is G 2805-C 2843 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 2.00 | External closing pair is G 2806-C 2842 |
| Stack | -1.30 | External closing pair is G 2812-T 2835 |
| Stack | -1.40 | External closing pair is A 2813-T 2834 |
| Stack | 0.30 | External closing pair is T 2814-G 2833 |
| Stack | -2.10 | External closing pair is G 2815-T 2832 |
| Helix | -4.50 | 5 base pairs. |
| Interior loop | -0.30 | External closing pair is G 2816-C 2831 |
| Stack | -2.40 | External closing pair is G 2818-C 2829 |
| Stack | -1.10 | External closing pair is A 2819-T 2828 |
| Stack | -1.30 | External closing pair is T 2820-A 2827 |
| Helix | -4.80 | 4 base pairs. |
| Hairpin loop | 5.00 | Closing pair is T 2821-G 2826 |
| Stack | -3.40 | External closing pair is G 2710-C 2767 |
| Stack | -2.40 | External closing pair is C 2711-G 2766 |
| Stack | -3.40 | External closing pair is G 2712-C 2765 |
| Stack | -2.10 | External closing pair is C 2713-G 2764 |
| Helix | -11.30 | 5 base pairs. |
| Multi-loop | 2.50 | External closing pair is A 2714-T 2763 9 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 2741-A 2759 |
| Stack | -2.10 | External closing pair is C 2742-G 2758 |
| Stack | -0.90 | External closing pair is T 2743-A 2757 |
| Stack | -2.10 | External closing pair is T 2744-A 2756 |
| Stack | -3.30 | External closing pair is G 2745-C 2755 |
| Stack | -3.40 | External closing pair is G 2746-C 2754 |
| Helix | -14.20 | 7 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2747-G 2753 |
| Stack | -3.40 | External closing pair is G 2716-C 2735 |
| Stack | -2.10 | External closing pair is C 2717-G 2734 |
| Stack | -2.10 | External closing pair is A 2718-T 2733 |
| Helix | -7.60 | 4 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 2719-C 2732 |
| Stack | -2.10 | External closing pair is C 77-G 2695 |
| Helix | -2.10 | 2 base pairs. |
| Bulge loop | 2.90 | External closing pair is A 78-T 2694 |
| Stack | -1.10 | External closing pair is A 79-T 2692 |
| Stack | -2.40 | External closing pair is T 80-A 2691 |
| Stack | -3.30 | External closing pair is C 81-G 2690 |
| Stack | -2.10 | External closing pair is C 82-G 2689 |
| Helix | -8.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 83-T 2688 |
| Stack | -2.50 | External closing pair is G 85-C 2687 |
| Stack | -1.50 | External closing pair is T 86-G 2686 |
| Stack | -2.10 | External closing pair is C 87-G 2685 |
| Stack | -1.10 | External closing pair is A 88-T 2684 |
| Stack | -0.90 | External closing pair is T 89-A 2683 |
| Stack | -2.10 | External closing pair is T 90-A 2682 |
| Stack | -2.50 | External closing pair is G 91-C 2681 |
| Helix | -12.70 | 8 base pairs. |
| Multi-loop | 4.50 | External closing pair is T 92-G 2680 29 ss bases & 4 closing helices. |
| Stack | -1.10 | External closing pair is A 2658-T 2677 |
| Stack | -2.40 | External closing pair is T 2659-A 2676 |
| Stack | -3.30 | External closing pair is C 2660-G 2675 |
| Stack | -2.10 | External closing pair is C 2661-G 2674 |
| Stack | -0.90 | External closing pair is A 2662-T 2673 |
| Helix | -9.80 | 6 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2663-T 2672 |
| Stack | -0.60 | External closing pair is A 190-T 2646 |
| Stack | -2.50 | External closing pair is G 191-T 2645 |
| Helix | -3.10 | 3 base pairs. |
| Bulge loop | 1.70 | External closing pair is C 192-G 2644 |
| Stack | -1.30 | External closing pair is T 194-A 2643 |
| Stack | -0.90 | External closing pair is A 195-T 2642 |
| Stack | -0.90 | External closing pair is A 196-T 2641 |
| Stack | -2.10 | External closing pair is A 197-T 2640 |
| Helix | -5.20 | 5 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 198-C 2639 |
| Stack | -2.40 | External closing pair is C 200-G 2638 |
| Stack | -3.30 | External closing pair is G 201-C 2637 |
| Stack | -2.40 | External closing pair is G 202-C 2636 |
| Helix | -8.10 | 4 base pairs. |
| Interior loop | 1.60 | External closing pair is A 203-T 2635 |
| Stack | -1.40 | External closing pair is G 207-T 2631 |
| Stack | -1.30 | External closing pair is T 208-A 2630 |
| Stack | -1.40 | External closing pair is T 209-G 2629 |
| Stack | -2.50 | External closing pair is G 210-C 2628 |
| Stack | -0.60 | External closing pair is T 211-G 2627 |
| Stack | -1.30 | External closing pair is T 212-A 2626 |
| Helix | -8.50 | 7 base pairs. |
| Interior loop | 2.90 | External closing pair is T 213-G 2625 |
| Stack | -2.50 | External closing pair is G 221-T 2618 |
| Stack | -2.10 | External closing pair is C 222-G 2617 |
| Stack | -2.20 | External closing pair is A 223-T 2616 |
| Helix | -6.80 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is C 224-G 2615 17 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 809-A 2611 |
| Stack | -1.00 | External closing pair is T 810-A 2610 |
| Stack | -2.50 | External closing pair is G 811-T 2609 |
| Stack | -2.40 | External closing pair is C 812-G 2608 |
| Stack | -1.50 | External closing pair is G 813-C 2607 |
| Stack | -2.50 | External closing pair is G 814-T 2606 |
| Stack | -2.10 | External closing pair is C 815-G 2605 |
| Stack | -1.10 | External closing pair is A 816-T 2604 |
| Stack | -1.30 | External closing pair is T 817-A 2603 |
| Helix | -15.30 | 10 base pairs. |
| Interior loop | 0.10 | External closing pair is T 818-G 2602 |
| Multi-loop | 2.90 | External closing pair is C 821-G 2599 9 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 2138-A 2593 |
| Stack | -2.10 | External closing pair is A 2139-T 2592 |
| Stack | -2.20 | External closing pair is G 2140-C 2591 |
| Stack | -1.00 | External closing pair is T 2141-A 2590 |
| Stack | -2.10 | External closing pair is G 2142-T 2589 |
| Stack | -3.40 | External closing pair is G 2143-C 2588 |
| Stack | -2.10 | External closing pair is C 2144-G 2587 |
| Stack | -0.90 | External closing pair is T 2145-A 2586 |
| Stack | -2.40 | External closing pair is T 2146-A 2585 |
| Stack | -2.10 | External closing pair is C 2147-G 2584 |
| Stack | -2.10 | External closing pair is A 2148-T 2583 |
| Stack | -3.40 | External closing pair is G 2149-C 2582 |
| Stack | -2.10 | External closing pair is C 2150-G 2581 |
| Stack | -1.30 | External closing pair is T 2151-A 2580 |
| Stack | -1.40 | External closing pair is A 2152-T 2579 |
| Stack | -1.40 | External closing pair is T 2153-G 2578 |
| Helix | -31.30 | 17 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 2154-C 2577 |
| Multi-loop | 0.90 | External closing pair is C 2155-G 2575 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is T 2198-G 2573 |
| Stack | -0.90 | External closing pair is T 2199-A 2572 |
| Stack | -0.90 | External closing pair is T 2200-A 2571 |
| Helix | -2.40 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 2201-A 2570 |
| Stack | -2.20 | External closing pair is A 2203-T 2568 |
| Stack | -3.30 | External closing pair is C 2204-G 2567 |
| Stack | -2.10 | External closing pair is C 2205-G 2566 |
| Helix | -7.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is A 2206-T 2565 16 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is G 2255-C 2563 |
| Stack | -1.40 | External closing pair is A 2256-T 2562 |
| Stack | -1.50 | External closing pair is T 2257-G 2561 |
| Stack | -2.10 | External closing pair is C 2258-G 2560 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 2.30 | External closing pair is T 2259-A 2559 2 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 2543-G 2557 |
| Stack | -0.90 | External closing pair is A 2544-T 2556 |
| Stack | -1.10 | External closing pair is A 2545-T 2555 |
| Stack | -2.40 | External closing pair is T 2546-A 2554 |
| Helix | -6.50 | 5 base pairs. |
| Hairpin loop | 4.20 | Closing pair is C 2547-G 2553 |
| Stack | -3.30 | External closing pair is G 2260-C 2541 |
| Stack | -2.50 | External closing pair is G 2261-C 2540 |
| Helix | -5.80 | 3 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 2262-G 2539 11 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 2381-A 2534 |
| Stack | -1.30 | External closing pair is T 2382-A 2533 |
| Stack | -0.60 | External closing pair is T 2383-G 2532 |
| Stack | -0.90 | External closing pair is T 2384-A 2531 |
| Stack | -1.30 | External closing pair is T 2385-A 2530 |
| Stack | -1.10 | External closing pair is A 2386-T 2529 |
| Helix | -6.10 | 7 base pairs. |
| Interior loop | -0.40 | External closing pair is T 2387-A 2528 |
| Stack | -2.10 | External closing pair is A 2389-T 2526 |
| Helix | -2.10 | 2 base pairs. |
| Multi-loop | 1.60 | External closing pair is G 2390-C 2525 21 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 2477-T 2520 |
| Stack | -1.00 | External closing pair is T 2478-A 2519 |
| Stack | -2.10 | External closing pair is G 2479-T 2518 |
| Stack | -2.20 | External closing pair is G 2480-C 2517 |
| Stack | -0.90 | External closing pair is T 2481-A 2516 |
| Stack | -1.00 | External closing pair is T 2482-A 2515 |
| Helix | -8.30 | 7 base pairs. |
| Interior loop | 2.60 | External closing pair is G 2483-T 2514 |
| Stack | -2.10 | External closing pair is A 2487-T 2511 |
| Stack | -2.40 | External closing pair is G 2488-C 2510 |
| Stack | -1.10 | External closing pair is A 2489-T 2509 |
| Stack | -1.30 | External closing pair is T 2490-A 2508 |
| Stack | -1.40 | External closing pair is A 2491-T 2507 |
| Stack | -1.40 | External closing pair is T 2492-G 2506 |
| Stack | -3.30 | External closing pair is G 2493-C 2505 |
| Stack | -2.40 | External closing pair is G 2494-C 2504 |
| Helix | -15.40 | 9 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2495-T 2503 |
| Stack | -2.10 | External closing pair is C 2402-G 2470 |
| Stack | -1.30 | External closing pair is T 2403-A 2469 |
| Stack | -2.20 | External closing pair is A 2404-T 2468 |
| Stack | -3.30 | External closing pair is C 2405-G 2467 |
| Stack | -1.40 | External closing pair is C 2406-G 2466 |
| Helix | -10.30 | 6 base pairs. |
| Interior loop | 1.80 | External closing pair is G 2407-T 2465 |
| Stack | -2.10 | External closing pair is C 2414-G 2457 |
| Stack | -0.90 | External closing pair is A 2415-T 2456 |
| Helix | -3.00 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is A 2416-T 2455 |
| Stack | -1.50 | External closing pair is G 2418-C 2453 |
| Stack | -2.10 | External closing pair is G 2419-T 2452 |
| Stack | -2.20 | External closing pair is G 2420-C 2451 |
| Stack | -1.30 | External closing pair is T 2421-A 2450 |
| Stack | -1.10 | External closing pair is A 2422-T 2449 |
| Helix | -8.20 | 6 base pairs. |
| Interior loop | 3.90 | External closing pair is T 2423-A 2448 |
| Stack | -2.40 | External closing pair is G 2430-C 2445 |
| Stack | -1.40 | External closing pair is A 2431-T 2444 |
| Stack | -1.00 | External closing pair is T 2432-G 2443 |
| Stack | -1.40 | External closing pair is A 2433-T 2442 |
| Stack | -1.50 | External closing pair is T 2434-G 2441 |
| Helix | -7.70 | 6 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2435-G 2440 |
| Stack | -3.40 | External closing pair is G 2263-C 2373 |
| Stack | -3.30 | External closing pair is C 2264-G 2372 |
| Stack | -2.10 | External closing pair is C 2265-G 2371 |
| Stack | -2.10 | External closing pair is T 2266-A 2370 |
| Stack | -3.40 | External closing pair is G 2267-C 2369 |
| Helix | -14.30 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is C 2268-G 2368 |
| Stack | -2.10 | External closing pair is A 2270-T 2366 |
| Stack | -2.40 | External closing pair is G 2271-C 2365 |
| Stack | -1.40 | External closing pair is A 2272-T 2364 |
| Stack | -1.00 | External closing pair is T 2273-G 2363 |
| Helix | -6.90 | 5 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 2274-T 2362 |
| Stack | -3.30 | External closing pair is G 2276-C 2361 |
| Stack | -2.20 | External closing pair is G 2277-C 2360 |
| Stack | -0.90 | External closing pair is T 2278-A 2359 |
| Helix | -6.40 | 4 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 2279-A 2358 34 ss bases & 4 closing helices. |
| Stack | -0.90 | External closing pair is T 2336-A 2349 |
| Stack | -2.10 | External closing pair is T 2337-A 2348 |
| Stack | -3.40 | External closing pair is G 2338-C 2347 |
| Stack | -2.10 | External closing pair is C 2339-G 2346 |
| Helix | -8.50 | 5 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 2340-T 2345 |
| Stack | -0.90 | External closing pair is A 2304-T 2323 |
| Stack | -1.10 | External closing pair is A 2305-T 2322 |
| Stack | -0.90 | External closing pair is T 2306-A 2321 |
| Stack | -1.30 | External closing pair is T 2307-A 2320 |
| Stack | -0.90 | External closing pair is A 2308-T 2319 |
| Stack | -0.90 | External closing pair is A 2309-T 2318 |
| Stack | -0.90 | External closing pair is A 2310-T 2317 |
| Helix | -6.90 | 8 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2311-T 2316 |
| Stack | -2.10 | External closing pair is C 2283-G 2292 |
| Stack | -2.40 | External closing pair is T 2284-A 2291 |
| Helix | -4.50 | 3 base pairs. |
| Hairpin loop | 0.40 | Closing pair is C 2285-G 2290 |
| Stack | -0.60 | External closing pair is A 2208-T 2240 |
| Stack | -1.30 | External closing pair is G 2209-T 2239 |
| Stack | -1.40 | External closing pair is A 2210-T 2238 |
| Stack | -1.40 | External closing pair is T 2211-G 2237 |
| Stack | -1.50 | External closing pair is G 2212-C 2236 |
| Helix | -6.20 | 6 base pairs. |
| Bulge loop | 2.50 | External closing pair is G 2213-T 2235 |
| Stack | -1.40 | External closing pair is A 2215-T 2234 |
| Stack | -1.40 | External closing pair is T 2216-G 2233 |
| Stack | -2.40 | External closing pair is G 2217-C 2232 |
| Stack | -2.20 | External closing pair is A 2218-T 2231 |
| Stack | -2.10 | External closing pair is C 2219-G 2230 |
| Helix | -9.50 | 6 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 2220-A 2229 |
| Stack | -2.20 | External closing pair is G 2159-C 2192 |
| Stack | -0.90 | External closing pair is T 2160-A 2191 |
| Stack | -2.10 | External closing pair is T 2161-A 2190 |
| Stack | -3.40 | External closing pair is G 2162-C 2189 |
| Stack | -2.10 | External closing pair is C 2163-G 2188 |
| Helix | -10.70 | 6 base pairs. |
| Interior loop | 0.50 | External closing pair is A 2164-T 2187 |
| Stack | -2.50 | External closing pair is G 2167-T 2184 |
| Stack | -3.30 | External closing pair is C 2168-G 2183 |
| Stack | -2.10 | External closing pair is C 2169-G 2182 |
| Stack | -1.40 | External closing pair is A 2170-T 2181 |
| Stack | -1.50 | External closing pair is T 2171-G 2180 |
| Stack | -2.10 | External closing pair is C 2172-G 2179 |
| Helix | -12.90 | 7 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 2173-T 2178 |
| Stack | -2.20 | External closing pair is A 825-T 2136 |
| Stack | -2.10 | External closing pair is C 826-G 2135 |
| Stack | -0.90 | External closing pair is A 827-T 2134 |
| Helix | -5.20 | 4 base pairs. |
| Interior loop | 1.50 | External closing pair is A 828-T 2133 |
| Stack | -0.90 | External closing pair is T 832-A 2130 |
| Stack | -2.40 | External closing pair is T 833-A 2129 |
| Stack | -3.30 | External closing pair is C 834-G 2128 |
| Helix | -6.60 | 4 base pairs. |
| Multi-loop | 1.70 | External closing pair is C 835-G 2127 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2054-A 2121 |
| Stack | -3.40 | External closing pair is G 2055-C 2120 |
| Stack | -3.30 | External closing pair is C 2056-G 2119 |
| Stack | -2.10 | External closing pair is C 2057-G 2118 |
| Helix | -10.90 | 5 base pairs. |
| Multi-loop | 4.30 | External closing pair is A 2058-T 2117 19 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 2076-A 2100 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is G 2077-C 2099 |
| Stack | -2.40 | External closing pair is T 2079-A 2097 |
| Stack | -3.30 | External closing pair is C 2080-G 2096 |
| Stack | -2.10 | External closing pair is C 2081-G 2095 |
| Stack | -1.10 | External closing pair is A 2082-T 2094 |
| Stack | -1.30 | External closing pair is T 2083-A 2093 |
| Stack | -1.00 | External closing pair is T 2084-G 2092 |
| Stack | -0.90 | External closing pair is A 2085-T 2091 |
| Helix | -12.10 | 8 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 2086-T 2090 |
| Stack | -1.40 | External closing pair is A 2059-T 2072 |
| Stack | -1.00 | External closing pair is T 2060-G 2071 |
| Stack | -2.20 | External closing pair is A 2061-T 2070 |
| Stack | -3.30 | External closing pair is C 2062-G 2069 |
| Helix | -7.90 | 5 base pairs. |
| Hairpin loop | 3.80 | Closing pair is C 2063-G 2068 |
| Stack | -1.30 | External closing pair is T 843-A 2051 |
| Stack | -2.10 | External closing pair is A 844-T 2050 |
| Stack | -2.50 | External closing pair is G 845-C 2049 |
| Helix | -5.90 | 4 base pairs. |
| Interior loop | 1.90 | External closing pair is T 846-G 2048 |
| Stack | -2.10 | External closing pair is T 849-A 2044 |
| Stack | -2.40 | External closing pair is G 850-C 2043 |
| Stack | -2.20 | External closing pair is A 851-T 2042 |
| Stack | -2.10 | External closing pair is C 852-G 2041 |
| Helix | -8.80 | 5 base pairs. |
| Interior loop | 4.60 | External closing pair is A 853-T 2040 |
| Stack | -2.20 | External closing pair is A 862-T 2034 |
| Stack | -1.40 | External closing pair is C 863-G 2033 |
| Stack | -2.10 | External closing pair is G 864-T 2032 |
| Stack | -2.50 | External closing pair is G 865-C 2031 |
| Stack | -1.00 | External closing pair is T 866-G 2030 |
| Stack | -0.90 | External closing pair is A 867-T 2029 |
| Stack | -2.10 | External closing pair is A 868-T 2028 |
| Stack | -3.40 | External closing pair is G 869-C 2027 |
| Helix | -15.60 | 9 base pairs. |
| Multi-loop | 2.40 | External closing pair is C 870-G 2026 15 ss bases & 3 closing helices. |
| Stack | -1.30 | External closing pair is T 1993-A 2025 |
| Stack | -1.50 | External closing pair is T 1994-G 2024 |
| Stack | -2.10 | External closing pair is C 1995-G 2023 |
| Stack | -0.60 | External closing pair is A 1996-T 2022 |
| Stack | -1.30 | External closing pair is G 1997-T 2021 |
| Stack | -0.90 | External closing pair is A 1998-T 2020 |
| Stack | -0.90 | External closing pair is A 1999-T 2019 |
| Stack | -1.40 | External closing pair is A 2000-T 2018 |
| Helix | -10.00 | 9 base pairs. |
| Interior loop | 4.00 | External closing pair is T 2001-G 2017 |
| Stack | -1.40 | External closing pair is T 2004-G 2015 |
| Stack | -2.40 | External closing pair is G 2005-C 2014 |
| Stack | -1.10 | External closing pair is A 2006-T 2013 |
| Helix | -4.90 | 4 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 2007-A 2012 |
| Stack | -3.30 | External closing pair is G 885-C 1991 |
| Stack | -3.40 | External closing pair is G 886-C 1990 |
| Helix | -6.70 | 3 base pairs. |
| Interior loop | 1.20 | External closing pair is C 887-G 1989 |
| Stack | -0.90 | External closing pair is T 892-A 1984 |
| Stack | -0.90 | External closing pair is T 893-A 1983 |
| Stack | -2.40 | External closing pair is T 894-A 1982 |
| Helix | -4.20 | 4 base pairs. |
| Multi-loop | 0.40 | External closing pair is C 895-G 1981 17 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is T 1954-A 1969 |
| Stack | -2.10 | External closing pair is T 1955-A 1968 |
| Stack | -3.30 | External closing pair is G 1956-C 1967 |
| Stack | -3.40 | External closing pair is G 1957-C 1966 |
| Helix | -9.70 | 5 base pairs. |
| Hairpin loop | 4.00 | Closing pair is C 1958-G 1965 |
| Stack | -2.40 | External closing pair is G 898-C 1949 |
| Stack | -0.90 | External closing pair is A 899-T 1948 |
| Stack | -0.60 | External closing pair is A 900-T 1947 |
| Stack | -2.10 | External closing pair is G 901-T 1946 |
| Stack | -2.20 | External closing pair is G 902-C 1945 |
| Stack | -2.10 | External closing pair is T 903-A 1944 |
| Stack | -3.40 | External closing pair is G 904-C 1943 |
| Stack | -3.30 | External closing pair is C 905-G 1942 |
| Stack | -2.10 | External closing pair is C 906-G 1941 |
| Helix | -19.10 | 10 base pairs. |
| Interior loop | 4.20 | External closing pair is T 907-A 1940 |
| Stack | -2.40 | External closing pair is T 914-A 1936 |
| Stack | -3.30 | External closing pair is C 915-G 1935 |
| Helix | -5.70 | 3 base pairs. |
| Interior loop | 1.40 | External closing pair is C 916-G 1934 |
| Stack | -1.30 | External closing pair is G 919-T 1932 |
| Stack | -2.20 | External closing pair is A 920-T 1931 |
| Stack | -2.10 | External closing pair is C 921-G 1930 |
| Stack | -1.30 | External closing pair is T 922-A 1929 |
| Helix | -6.90 | 5 base pairs. |
| Multi-loop | 4.70 | External closing pair is A 923-T 1928 9 ss bases & 3 closing helices. |
| Stack | -0.60 | External closing pair is A 967-T 1927 |
| Stack | -1.30 | External closing pair is G 968-T 1926 |
| Stack | -2.20 | External closing pair is A 969-T 1925 |
| Helix | -4.10 | 4 base pairs. |
| Multi-loop | 0.60 | External closing pair is C 970-G 1924 6 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1225-C 1922 |
| Stack | -2.10 | External closing pair is C 1226-G 1921 |
| Stack | -1.40 | External closing pair is A 1227-T 1920 |
| Helix | -6.90 | 4 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1228-G 1919 |
| Stack | -2.10 | External closing pair is A 1230-T 1917 |
| Stack | -2.20 | External closing pair is G 1231-C 1916 |
| Stack | -0.90 | External closing pair is T 1232-A 1915 |
| Helix | -5.20 | 4 base pairs. |
| Multi-loop | 2.50 | External closing pair is T 1233-A 1914 7 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is C 1257-G 1909 |
| Stack | -2.10 | External closing pair is C 1258-G 1908 |
| Stack | -1.30 | External closing pair is T 1259-A 1907 |
| Stack | -0.60 | External closing pair is T 1260-G 1906 |
| Stack | -1.30 | External closing pair is T 1261-A 1905 |
| Helix | -8.60 | 6 base pairs. |
| Interior loop | 1.90 | External closing pair is A 1262-T 1904 |
| Stack | -0.90 | External closing pair is T 1265-A 1900 |
| Stack | -0.90 | External closing pair is T 1266-A 1899 |
| Stack | -0.90 | External closing pair is T 1267-A 1898 |
| Stack | -2.40 | External closing pair is T 1268-A 1897 |
| Helix | -5.10 | 5 base pairs. |
| Multi-loop | -1.20 | External closing pair is C 1269-G 1896 24 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1870-C 1880 |
| Stack | -2.50 | External closing pair is G 1871-C 1879 |
| Helix | -5.80 | 3 base pairs. |
| Hairpin loop | 5.10 | Closing pair is T 1872-G 1878 |
| Stack | -2.40 | External closing pair is G 1273-C 1863 |
| Stack | -1.40 | External closing pair is A 1274-T 1862 |
| Stack | -1.00 | External closing pair is T 1275-G 1861 |
| Stack | -0.90 | External closing pair is A 1276-T 1860 |
| Stack | -2.10 | External closing pair is A 1277-T 1859 |
| Helix | -7.80 | 6 base pairs. |
| Multi-loop | 0.10 | External closing pair is G 1278-C 1858 31 ss bases & 4 closing helices. |
| Stack | -2.40 | External closing pair is G 1690-C 1853 |
| Stack | -0.90 | External closing pair is A 1691-T 1852 |
| Stack | -0.90 | External closing pair is A 1692-T 1851 |
| Stack | -2.20 | External closing pair is A 1693-T 1850 |
| Helix | -6.40 | 5 base pairs. |
| Interior loop | -1.60 | External closing pair is C 1694-G 1849 |
| Stack | -2.10 | External closing pair is C 1697-G 1846 |
| Stack | -2.10 | External closing pair is A 1698-T 1845 |
| Stack | -2.20 | External closing pair is G 1699-C 1844 |
| Stack | -1.00 | External closing pair is T 1700-A 1843 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is G 1701-T 1842 23 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 1751-A 1820 |
| Stack | -2.10 | External closing pair is C 1752-G 1819 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.30 | External closing pair is T 1753-A 1818 |
| Stack | -2.10 | External closing pair is C 1757-G 1813 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 1.70 | External closing pair is T 1758-G 1812 |
| Stack | -1.00 | External closing pair is T 1760-A 1810 |
| Stack | -1.30 | External closing pair is G 1761-T 1809 |
| Stack | -2.10 | External closing pair is A 1762-T 1808 |
| Stack | -2.20 | External closing pair is G 1763-C 1807 |
| Stack | -0.90 | External closing pair is T 1764-A 1806 |
| Stack | -2.40 | External closing pair is T 1765-A 1805 |
| Stack | -3.30 | External closing pair is C 1766-G 1804 |
| Helix | -13.20 | 8 base pairs. |
| Interior loop | 6.70 | External closing pair is C 1767-G 1803 |
| Stack | -2.10 | External closing pair is A 1769-T 1788 |
| Stack | -3.30 | External closing pair is G 1770-C 1787 |
| Stack | -2.40 | External closing pair is G 1771-C 1786 |
| Stack | -2.20 | External closing pair is A 1772-T 1785 |
| Stack | -2.40 | External closing pair is C 1773-G 1784 |
| Helix | -12.40 | 6 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1774-C 1783 |
| Stack | -2.40 | External closing pair is C 1704-G 1750 |
| Stack | -3.40 | External closing pair is G 1705-C 1749 |
| Stack | -1.40 | External closing pair is C 1706-G 1748 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 3.10 | External closing pair is G 1707-T 1747 11 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1724-G 1737 |
| Stack | -2.10 | External closing pair is T 1725-A 1736 |
| Helix | -4.20 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is G 1726-C 1735 |
| Stack | -2.10 | External closing pair is A 1710-T 1723 |
| Stack | -2.40 | External closing pair is G 1711-C 1722 |
| Stack | -1.10 | External closing pair is A 1712-T 1721 |
| Stack | -1.30 | External closing pair is T 1713-A 1720 |
| Helix | -6.90 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1714-T 1719 |
| Stack | -3.40 | External closing pair is G 1675-C 1686 |
| Stack | -2.10 | External closing pair is C 1676-G 1685 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.60 | Closing pair is T 1677-G 1684 |
| Stack | -3.30 | External closing pair is G 1302-C 1673 |
| Stack | -2.50 | External closing pair is G 1303-C 1672 |
| Stack | -1.00 | External closing pair is T 1304-G 1671 |
| Stack | -1.10 | External closing pair is A 1305-T 1670 |
| Stack | -1.30 | External closing pair is T 1306-A 1669 |
| Stack | -1.40 | External closing pair is A 1307-T 1668 |
| Stack | -0.60 | External closing pair is T 1308-G 1667 |
| Stack | -0.90 | External closing pair is T 1309-A 1666 |
| Stack | -1.30 | External closing pair is T 1310-A 1665 |
| Stack | -1.40 | External closing pair is T 1311-G 1664 |
| Stack | -2.40 | External closing pair is G 1312-C 1663 |
| Helix | -17.20 | 12 base pairs. |
| Interior loop | 4.10 | External closing pair is A 1313-T 1662 |
| Stack | -2.40 | External closing pair is T 1315-A 1658 |
| Stack | -2.10 | External closing pair is C 1316-G 1657 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 3.70 | External closing pair is T 1317-A 1656 |
| Stack | -0.90 | External closing pair is A 1320-T 1652 |
| Stack | -1.40 | External closing pair is A 1321-T 1651 |
| Stack | -0.60 | External closing pair is T 1322-G 1650 |
| Stack | -1.30 | External closing pair is T 1323-A 1649 |
| Stack | -1.00 | External closing pair is T 1324-G 1648 |
| Helix | -5.20 | 6 base pairs. |
| Interior loop | 1.70 | External closing pair is A 1325-T 1647 |
| Stack | -2.40 | External closing pair is T 1327-A 1645 |
| Stack | -2.40 | External closing pair is C 1328-G 1644 |
| Stack | -2.20 | External closing pair is G 1329-C 1643 |
| Stack | -0.90 | External closing pair is T 1330-A 1642 |
| Helix | -7.90 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1331-A 1641 |
| Stack | -3.30 | External closing pair is C 1333-G 1639 |
| Helix | -3.30 | 2 base pairs. |
| Multi-loop | 1.50 | External closing pair is C 1334-G 1638 34 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is T 1557-A 1631 |
| Stack | -3.40 | External closing pair is G 1558-C 1630 |
| Stack | -2.10 | External closing pair is C 1559-G 1629 |
| Stack | -2.10 | External closing pair is T 1560-A 1628 |
| Helix | -9.70 | 5 base pairs. |
| Multi-loop | 1.70 | External closing pair is G 1561-C 1627 28 ss bases & 3 closing helices. |
| Stack | -0.90 | External closing pair is A 1603-T 1623 |
| Stack | -1.40 | External closing pair is A 1604-T 1622 |
| Stack | -1.00 | External closing pair is T 1605-G 1621 |
| Stack | -0.90 | External closing pair is A 1606-T 1620 |
| Stack | -2.10 | External closing pair is A 1607-T 1619 |
| Stack | -2.40 | External closing pair is G 1608-C 1618 |
| Stack | -1.10 | External closing pair is A 1609-T 1617 |
| Stack | -2.40 | External closing pair is T 1610-A 1616 |
| Helix | -12.20 | 9 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1611-G 1615 |
| Stack | -3.30 | External closing pair is G 1576-C 1591 |
| Stack | -2.40 | External closing pair is G 1577-C 1590 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 5.40 | Closing pair is A 1578-T 1589 |
| Stack | -2.10 | External closing pair is A 1353-T 1546 |
| Stack | -2.40 | External closing pair is G 1354-C 1545 |
| Stack | -1.40 | External closing pair is A 1355-T 1544 |
| Stack | -1.00 | External closing pair is T 1356-G 1543 |
| Stack | -1.10 | External closing pair is A 1357-T 1542 |
| Stack | -0.90 | External closing pair is T 1358-A 1541 |
| Stack | -2.10 | External closing pair is T 1359-A 1540 |
| Stack | -1.50 | External closing pair is G 1360-C 1539 |
| Helix | -12.50 | 9 base pairs. |
| Multi-loop | 2.10 | External closing pair is G 1361-T 1538 17 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1521-A 1531 |
| Stack | -2.50 | External closing pair is G 1522-T 1530 |
| Helix | -3.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1523-G 1529 |
| Stack | -3.40 | External closing pair is G 1370-C 1517 |
| Stack | -2.10 | External closing pair is C 1371-G 1516 |
| Stack | -0.90 | External closing pair is A 1372-T 1515 |
| Helix | -6.40 | 4 base pairs. |
| Interior loop | 3.70 | External closing pair is A 1373-T 1514 |
| Stack | -0.90 | External closing pair is A 1376-T 1509 |
| Stack | -2.10 | External closing pair is A 1377-T 1508 |
| Stack | -2.20 | External closing pair is G 1378-C 1507 |
| Stack | -1.00 | External closing pair is T 1379-A 1506 |
| Stack | -1.30 | External closing pair is G 1380-T 1505 |
| Stack | -1.40 | External closing pair is A 1381-T 1504 |
| Helix | -8.90 | 7 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 1382-G 1503 17 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 1416-C 1500 |
| Stack | -2.10 | External closing pair is C 1417-G 1499 |
| Stack | -2.10 | External closing pair is T 1418-A 1498 |
| Stack | -2.40 | External closing pair is G 1419-C 1497 |
| Helix | -10.00 | 5 base pairs. |
| Multi-loop | 3.40 | External closing pair is A 1420-T 1496 25 ss bases & 3 closing helices. |
| Stack | -1.10 | External closing pair is A 1459-T 1492 |
| Stack | -0.90 | External closing pair is T 1460-A 1491 |
| Stack | -2.10 | External closing pair is T 1461-A 1490 |
| Helix | -4.10 | 4 base pairs. |
| Interior loop | 1.10 | External closing pair is G 1462-C 1489 |
| Stack | -1.30 | External closing pair is T 1464-A 1487 |
| Stack | -1.50 | External closing pair is T 1465-G 1486 |
| Stack | -3.30 | External closing pair is C 1466-G 1485 |
| Stack | -2.40 | External closing pair is C 1467-G 1484 |
| Helix | -8.50 | 5 base pairs. |
| Interior loop | 2.00 | External closing pair is G 1468-C 1483 |
| Stack | -1.30 | External closing pair is T 1470-A 1480 |
| Stack | -2.10 | External closing pair is A 1471-T 1479 |
| Stack | -3.40 | External closing pair is G 1472-C 1478 |
| Helix | -6.80 | 4 base pairs. |
| Hairpin loop | 5.70 | Closing pair is C 1473-G 1477 |
| Stack | -2.10 | External closing pair is C 1432-G 1447 |
| Stack | -2.10 | External closing pair is A 1433-T 1446 |
| Stack | -2.40 | External closing pair is G 1434-C 1445 |
| Helix | -6.60 | 4 base pairs. |
| Hairpin loop | 4.50 | Closing pair is A 1435-T 1444 |
| Stack | -1.40 | External closing pair is G 1390-T 1407 |
| Stack | -1.00 | External closing pair is T 1391-A 1406 |
| Stack | -1.40 | External closing pair is G 1392-T 1405 |
| Stack | -0.90 | External closing pair is T 1393-A 1404 |
| Stack | -2.10 | External closing pair is T 1394-A 1403 |
| Stack | -3.40 | External closing pair is G 1395-C 1402 |
| Helix | -10.20 | 7 base pairs. |
| Hairpin loop | 4.60 | Closing pair is C 1396-G 1401 |
| Stack | -2.10 | External closing pair is T 1236-A 1255 |
| Stack | -1.50 | External closing pair is G 1237-C 1254 |
| Stack | -1.40 | External closing pair is G 1238-T 1253 |
| Stack | -2.40 | External closing pair is T 1239-A 1252 |
| Helix | -7.40 | 5 base pairs. |
| Hairpin loop | 4.50 | Closing pair is C 1240-G 1251 |
| Stack | -0.90 | External closing pair is T 974-A 1222 |
| Stack | -2.40 | External closing pair is T 975-A 1221 |
| Stack | -3.30 | External closing pair is C 976-G 1220 |
| Stack | -3.30 | External closing pair is C 977-G 1219 |
| Stack | -1.40 | External closing pair is C 978-G 1218 |
| Stack | -2.10 | External closing pair is G 979-T 1217 |
| Stack | -2.40 | External closing pair is G 980-C 1216 |
| Helix | -15.80 | 8 base pairs. |
| Interior loop | 4.70 | External closing pair is A 981-T 1215 |
| Stack | -1.00 | External closing pair is T 983-A 1210 |
| Stack | -2.10 | External closing pair is G 984-T 1209 |
| Stack | -2.50 | External closing pair is G 985-C 1208 |
| Stack | -1.50 | External closing pair is T 986-G 1207 |
| Stack | -2.10 | External closing pair is C 987-G 1206 |
| Helix | -9.20 | 6 base pairs. |
| Multi-loop | 3.00 | External closing pair is A 988-T 1205 14 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 1176-G 1196 |
| Stack | -2.40 | External closing pair is T 1177-A 1195 |
| Stack | -2.10 | External closing pair is C 1178-G 1194 |
| Stack | -0.60 | External closing pair is A 1179-T 1193 |
| Stack | -1.30 | External closing pair is G 1180-T 1192 |
| Stack | -0.90 | External closing pair is A 1181-T 1191 |
| Helix | -9.40 | 7 base pairs. |
| Hairpin loop | 5.70 | Closing pair is A 1182-T 1190 |
| Stack | -2.50 | External closing pair is G 995-C 1175 |
| Stack | -1.00 | External closing pair is T 996-G 1174 |
| Helix | -3.50 | 3 base pairs. |
| Bulge loop | 2.70 | External closing pair is A 997-T 1173 |
| Stack | -0.90 | External closing pair is T 998-A 1171 |
| Stack | -0.90 | External closing pair is T 999-A 1170 |
| Helix | -1.80 | 3 base pairs. |
| Interior loop | -2.50 | External closing pair is T 1000-A 1169 |
| Stack | -2.40 | External closing pair is T 1003-A 1166 |
| Stack | -2.10 | External closing pair is C 1004-G 1165 |
| Helix | -4.50 | 3 base pairs. |
| Multi-loop | 2.60 | External closing pair is T 1005-G 1164 21 ss bases & 3 closing helices. |
| Stack | -1.00 | External closing pair is T 1034-A 1153 |
| Stack | -1.40 | External closing pair is G 1035-T 1152 |
| Stack | -2.40 | External closing pair is T 1036-A 1151 |
| Stack | -2.10 | External closing pair is C 1037-G 1150 |
| Stack | -2.10 | External closing pair is T 1038-A 1149 |
| Stack | -3.40 | External closing pair is G 1039-C 1148 |
| Stack | -2.10 | External closing pair is C 1040-G 1147 |
| Helix | -14.50 | 8 base pairs. |
| Multi-loop | 3.60 | External closing pair is T 1041-A 1146 16 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 1125-C 1138 |
| Stack | -2.40 | External closing pair is G 1126-C 1137 |
| Stack | -2.20 | External closing pair is A 1127-T 1136 |
| Stack | -1.40 | External closing pair is C 1128-G 1135 |
| Helix | -9.30 | 5 base pairs. |
| Hairpin loop | 5.60 | Closing pair is G 1129-T 1134 |
| Stack | -2.40 | External closing pair is T 1051-A 1124 |
| Stack | -2.10 | External closing pair is C 1052-G 1123 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 1.10 | External closing pair is T 1053-A 1122 |
| Stack | -3.30 | External closing pair is C 1055-G 1120 |
| Stack | -2.10 | External closing pair is C 1056-G 1119 |
| Helix | -5.40 | 3 base pairs. |
| Multi-loop | 1.70 | External closing pair is A 1057-T 1118 18 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 1102-C 1111 |
| Stack | -2.40 | External closing pair is T 1103-A 1110 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 1104-G 1109 |
| Stack | -2.10 | External closing pair is T 1067-A 1098 |
| Stack | -2.40 | External closing pair is G 1068-C 1097 |
| Helix | -4.50 | 3 base pairs. |
| Interior loop | 2.40 | External closing pair is A 1069-T 1096 |
| Stack | -2.10 | External closing pair is C 1072-G 1094 |
| Stack | -2.10 | External closing pair is T 1073-A 1093 |
| Helix | -4.20 | 3 base pairs. |
| Bulge loop | 0.50 | External closing pair is G 1074-C 1092 |
| Stack | -2.40 | External closing pair is G 1075-C 1090 |
| Stack | -0.90 | External closing pair is A 1076-T 1089 |
| Helix | -3.30 | 3 base pairs. |
| Hairpin loop | 6.20 | Closing pair is A 1077-T 1088 |
| Stack | -3.40 | External closing pair is G 1014-C 1030 |
| Helix | -3.40 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 1015-G 1029 |
| Stack | -2.10 | External closing pair is A 1017-T 1027 |
| Stack | -2.20 | External closing pair is G 1018-C 1026 |
| Stack | -1.30 | External closing pair is T 1019-A 1025 |
| Helix | -5.60 | 4 base pairs. |
| Hairpin loop | 6.20 | Closing pair is T 1020-G 1024 |
| Stack | -1.00 | External closing pair is T 931-G 964 |
| Stack | -1.10 | External closing pair is A 932-T 963 |
| Stack | -1.30 | External closing pair is T 933-A 962 |
| Helix | -3.40 | 4 base pairs. |
| Interior loop | 2.70 | External closing pair is A 934-T 961 |
| Stack | -1.30 | External closing pair is T 936-A 958 |
| Stack | -2.10 | External closing pair is A 937-T 957 |
| Stack | -3.40 | External closing pair is G 938-C 956 |
| Helix | -6.80 | 4 base pairs. |
| Bulge loop | 3.70 | External closing pair is C 939-G 955 |
| Stack | -2.40 | External closing pair is T 940-A 951 |
| Stack | -3.30 | External closing pair is C 941-G 950 |
| Helix | -5.70 | 3 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 942-G 949 |
| Interior loop | -0.50 | External closing pair is G 236-C 805 |
| Stack | -2.10 | External closing pair is C 239-G 802 |
| Helix | -2.10 | 2 base pairs. |
| Interior loop | 3.20 | External closing pair is T 240-A 801 |
| Stack | -1.00 | External closing pair is T 243-A 799 |
| Stack | -1.40 | External closing pair is G 244-T 798 |
| Stack | -2.10 | External closing pair is T 245-A 797 |
| Helix | -4.50 | 4 base pairs. |
| Interior loop | -1.20 | External closing pair is G 246-C 796 |
| Stack | -1.00 | External closing pair is T 249-A 793 |
| Stack | -1.30 | External closing pair is G 250-T 792 |
| Helix | -2.30 | 3 base pairs. |
| Multi-loop | 2.40 | External closing pair is A 251-T 791 13 ss bases & 3 closing helices. |
| Stack | -3.40 | External closing pair is G 283-C 789 |
| Stack | -3.30 | External closing pair is C 284-G 788 |
| Stack | -1.40 | External closing pair is C 285-G 787 |
| Stack | -1.30 | External closing pair is G 286-T 786 |
| Stack | -1.10 | External closing pair is A 287-T 785 |
| Stack | -1.30 | External closing pair is T 288-A 784 |
| Helix | -11.80 | 7 base pairs. |
| Interior loop | 1.20 | External closing pair is A 289-T 783 |
| Stack | -0.90 | External closing pair is T 291-A 781 |
| Stack | -1.30 | External closing pair is T 292-A 780 |
| Stack | -1.40 | External closing pair is A 293-T 779 |
| Helix | -3.60 | 4 base pairs. |
| Multi-loop | 2.80 | External closing pair is T 294-G 778 4 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 454-T 776 |
| Stack | -2.40 | External closing pair is C 455-G 775 |
| Stack | -2.40 | External closing pair is G 456-C 774 |
| Helix | -7.00 | 4 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 457-T 773 |
| Stack | -0.90 | External closing pair is A 458-T 770 |
| Stack | -1.10 | External closing pair is A 459-T 769 |
| Stack | -2.10 | External closing pair is T 460-A 768 |
| Stack | -3.30 | External closing pair is G 461-C 767 |
| Helix | -7.40 | 5 base pairs. |
| Multi-loop | 0.90 | External closing pair is G 462-C 766 16 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is G 618-C 763 |
| Stack | -1.30 | External closing pair is T 619-A 762 |
| Stack | -0.50 | External closing pair is T 620-G 761 |
| Stack | -1.00 | External closing pair is T 621-G 760 |
| Stack | -0.90 | External closing pair is A 622-T 759 |
| Stack | -1.10 | External closing pair is A 623-T 758 |
| Stack | -2.10 | External closing pair is T 624-A 757 |
| Stack | -2.40 | External closing pair is G 625-C 756 |
| Stack | -2.20 | External closing pair is A 626-T 755 |
| Helix | -13.70 | 10 base pairs. |
| Bulge loop | 5.20 | External closing pair is C 627-G 754 |
| Stack | -1.10 | External closing pair is A 628-T 745 |
| Stack | -1.00 | External closing pair is T 629-A 744 |
| Stack | -1.30 | External closing pair is G 630-T 743 |
| Stack | -2.10 | External closing pair is A 631-T 742 |
| Stack | -3.30 | External closing pair is G 632-C 741 |
| Stack | -2.40 | External closing pair is G 633-C 740 |
| Stack | -0.90 | External closing pair is A 634-T 739 |
| Helix | -12.10 | 8 base pairs. |
| Interior loop | 3.80 | External closing pair is A 635-T 738 |
| Stack | -1.50 | External closing pair is T 638-G 736 |
| Stack | -2.40 | External closing pair is C 639-G 735 |
| Stack | -3.30 | External closing pair is G 640-C 734 |
| Helix | -7.20 | 4 base pairs. |
| Multi-loop | 2.70 | External closing pair is G 641-C 733 10 ss bases & 3 closing helices. |
| Stack | -2.40 | External closing pair is T 669-A 730 |
| Stack | -2.10 | External closing pair is C 670-G 729 |
| Stack | -0.90 | External closing pair is T 671-A 728 |
| Helix | -5.40 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 672-A 727 |
| Stack | -2.10 | External closing pair is C 674-G 726 |
| Stack | -0.90 | External closing pair is A 675-T 725 |
| Helix | -3.00 | 3 base pairs. |
| Multi-loop | 3.90 | External closing pair is A 676-T 724 18 ss bases & 3 closing helices. |
| Stack | -2.50 | External closing pair is G 702-T 720 |
| Stack | -2.10 | External closing pair is C 703-G 719 |
| Stack | -2.10 | External closing pair is T 704-A 718 |
| Stack | -2.20 | External closing pair is G 705-C 717 |
| Helix | -8.90 | 5 base pairs. |
| Hairpin loop | 6.10 | Closing pair is T 706-A 716 |
| Stack | -2.10 | External closing pair is T 681-A 690 |
| Stack | -3.40 | External closing pair is G 682-C 689 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 4.10 | Closing pair is C 683-G 688 |
| Stack | -0.90 | External closing pair is A 645-T 663 |
| Stack | -0.90 | External closing pair is A 646-T 662 |
| Stack | -2.10 | External closing pair is A 647-T 661 |
| Stack | -2.50 | External closing pair is G 648-C 660 |
| Stack | -0.60 | External closing pair is T 649-G 659 |
| Stack | -0.90 | External closing pair is T 650-A 658 |
| Helix | -7.90 | 7 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 651-A 657 |
| Stack | -2.10 | External closing pair is C 474-G 614 |
| Stack | -0.90 | External closing pair is A 475-T 613 |
| Stack | -2.20 | External closing pair is A 476-T 612 |
| Stack | -2.10 | External closing pair is C 477-G 611 |
| Stack | -2.10 | External closing pair is A 478-T 610 |
| Helix | -9.40 | 6 base pairs. |
| Multi-loop | 2.60 | External closing pair is G 479-C 609 26 ss bases & 3 closing helices. |
| Stack | -3.30 | External closing pair is G 519-C 589 |
| Stack | -2.20 | External closing pair is G 520-C 588 |
| Stack | -1.00 | External closing pair is T 521-A 587 |
| Stack | -1.30 | External closing pair is G 522-T 586 |
| Helix | -7.80 | 5 base pairs. |
| Bulge loop | 3.80 | External closing pair is A 523-T 585 |
| Stack | -2.10 | External closing pair is A 524-T 582 |
| Stack | -3.40 | External closing pair is G 525-C 581 |
| Helix | -5.50 | 3 base pairs. |
| Interior loop | 4.10 | External closing pair is C 526-G 580 |
| Stack | -0.90 | External closing pair is A 535-T 569 |
| Stack | -2.20 | External closing pair is A 536-T 568 |
| Stack | -2.10 | External closing pair is C 537-G 567 |
| Stack | -0.90 | External closing pair is A 538-T 566 |
| Stack | -0.90 | External closing pair is A 539-T 565 |
| Helix | -7.00 | 6 base pairs. |
| Interior loop | 1.10 | External closing pair is A 540-T 564 |
| Stack | -2.40 | External closing pair is C 542-G 562 |
| Stack | -2.40 | External closing pair is G 543-C 561 |
| Stack | -0.60 | External closing pair is A 544-T 560 |
| Stack | -2.50 | External closing pair is G 545-T 559 |
| Helix | -7.90 | 5 base pairs. |
| Bulge loop | 1.40 | External closing pair is C 546-G 558 |
| Stack | -2.40 | External closing pair is G 547-C 556 |
| Helix | -2.40 | 2 base pairs. |
| Hairpin loop | 5.10 | Closing pair is A 548-T 555 |
| Stack | -1.30 | External closing pair is T 486-A 517 |
| Stack | -1.10 | External closing pair is A 487-T 516 |
| Stack | -0.90 | External closing pair is T 488-A 515 |
| Stack | -0.90 | External closing pair is T 489-A 514 |
| Stack | -1.30 | External closing pair is T 490-A 513 |
| Stack | -1.40 | External closing pair is T 491-G 512 |
| Stack | -3.30 | External closing pair is G 492-C 511 |
| Helix | -10.20 | 8 base pairs. |
| Hairpin loop | 5.90 | Closing pair is G 493-C 510 |
| Stack | -3.30 | External closing pair is C 297-G 452 |
| Helix | -3.30 | 2 base pairs. |
| Interior loop | 1.10 | External closing pair is C 298-G 451 |
| Stack | -0.90 | External closing pair is T 300-A 449 |
| Stack | -0.90 | External closing pair is T 301-A 448 |
| Stack | -0.90 | External closing pair is T 302-A 447 |
| Stack | -2.40 | External closing pair is T 303-A 446 |
| Stack | -2.10 | External closing pair is C 304-G 445 |
| Helix | -7.20 | 6 base pairs. |
| Interior loop | 3.20 | External closing pair is A 305-T 444 |
| Stack | -1.00 | External closing pair is T 307-G 441 |
| Stack | -1.40 | External closing pair is A 308-T 440 |
| Stack | -0.60 | External closing pair is T 309-G 439 |
| Stack | -1.30 | External closing pair is T 310-A 438 |
| Helix | -4.30 | 5 base pairs. |
| Multi-loop | 2.70 | External closing pair is A 311-T 437 22 ss bases & 3 closing helices. |
| Stack | -2.10 | External closing pair is C 353-G 423 |
| Stack | -0.90 | External closing pair is T 354-A 422 |
| Stack | -0.90 | External closing pair is T 355-A 421 |
| Stack | -2.10 | External closing pair is T 356-A 420 |
| Helix | -6.00 | 5 base pairs. |
| Bulge loop | 0.40 | External closing pair is G 357-C 419 |
| Bulge loop | 0.50 | External closing pair is C 358-G 417 |
| Stack | -2.10 | External closing pair is C 359-G 415 |
| Stack | -0.90 | External closing pair is T 360-A 414 |
| Stack | -2.40 | External closing pair is T 361-A 413 |
| Helix | -5.40 | 4 base pairs. |
| Interior loop | 0.50 | External closing pair is C 362-G 412 |
| Stack | -2.10 | External closing pair is C 364-G 410 |
| Stack | -0.90 | External closing pair is T 365-A 409 |
| Stack | -1.00 | External closing pair is T 366-A 408 |
| Stack | -1.30 | External closing pair is G 367-T 407 |
| Stack | -1.10 | External closing pair is A 368-T 406 |
| Stack | -1.00 | External closing pair is T 369-A 405 |
| Stack | -1.30 | External closing pair is G 370-T 404 |
| Helix | -8.70 | 8 base pairs. |
| Multi-loop | 2.20 | External closing pair is A 371-T 403 10 ss bases & 3 closing helices. |
| Stack | -2.20 | External closing pair is A 389-T 400 |
| Stack | -3.30 | External closing pair is C 390-G 399 |
| Helix | -5.50 | 3 base pairs. |
| Hairpin loop | 3.90 | Closing pair is C 391-G 398 |
| Stack | -2.20 | External closing pair is G 373-C 381 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 4.80 | Closing pair is T 374-A 380 |
| Stack | -0.90 | External closing pair is T 313-A 344 |
| Stack | -2.10 | External closing pair is T 314-A 343 |
| Stack | -2.20 | External closing pair is G 315-C 342 |
| Stack | -2.40 | External closing pair is T 316-A 341 |
| Stack | -2.10 | External closing pair is C 317-G 340 |
| Helix | -9.70 | 6 base pairs. |
| Hairpin loop | 6.70 | Closing pair is T 318-G 339 |
| Stack | -1.00 | External closing pair is T 256-A 274 |
| Stack | -2.10 | External closing pair is G 257-T 273 |
| Stack | -2.40 | External closing pair is G 258-C 272 |
| Helix | -5.50 | 4 base pairs. |
| Bulge loop | 1.70 | External closing pair is A 259-T 271 |
| Stack | -2.50 | External closing pair is G 261-C 270 |
| Stack | -0.60 | External closing pair is T 262-G 269 |
| Helix | -3.10 | 3 base pairs. |
| Hairpin loop | 5.30 | Closing pair is T 263-A 268 |
| Stack | -1.00 | External closing pair is T 96-A 176 |
| Stack | -2.50 | External closing pair is G 97-T 175 |
| Stack | -2.10 | External closing pair is C 98-G 174 |
| Stack | -2.10 | External closing pair is T 99-A 173 |
| Helix | -7.70 | 5 base pairs. |
| Interior loop | 2.70 | External closing pair is G 100-C 172 |
| Stack | -2.40 | External closing pair is G 108-C 167 |
| Stack | -2.10 | External closing pair is A 109-T 166 |
| Stack | -2.20 | External closing pair is G 110-C 165 |
| Helix | -6.70 | 4 base pairs. |
| Bulge loop | 1.40 | External closing pair is T 111-A 164 |
| Stack | -3.30 | External closing pair is C 113-G 163 |
| Stack | -1.40 | External closing pair is C 114-G 162 |
| Helix | -4.70 | 3 base pairs. |
| Bulge loop | 3.30 | External closing pair is G 115-T 161 |
| Stack | -3.40 | External closing pair is G 118-C 160 |
| Stack | -2.10 | External closing pair is C 119-G 159 |
| Helix | -5.50 | 3 base pairs. |
| Bulge loop | 3.80 | External closing pair is T 120-A 158 |
| Stack | -2.40 | External closing pair is T 123-A 157 |
| Stack | -2.10 | External closing pair is C 124-G 156 |
| Stack | -1.00 | External closing pair is T 125-G 155 |
| Stack | -1.10 | External closing pair is A 126-T 154 |
| Helix | -6.60 | 5 base pairs. |
| Interior loop | 1.10 | External closing pair is T 127-A 153 |
| Stack | -2.40 | External closing pair is C 129-G 151 |
| Stack | -2.20 | External closing pair is G 130-C 150 |
| Helix | -4.60 | 3 base pairs. |
| Hairpin loop | 5.70 | Closing pair is T 131-A 149 |
| Stack | -2.20 | External closing pair is A 19-T 26 |
| Helix | -2.20 | 2 base pairs. |
| Hairpin loop | 3.40 | Closing pair is C 20-G 25 |