Loop Free-Energy Decomposition

Structure 1
seq.txt
ΔG = -820.20

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Helix -12.50 8 base pairs.
Multi-loop 2.20External closing pair is G 210-C 1913
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1784-C 1911
Stack -2.40External closing pair is T 1785-A 1910
Stack -3.30External closing pair is C 1786-G 1909
Stack -2.10External closing pair is C 1787-G 1908
Stack -1.30External closing pair is T 1788-A 1907
Stack -0.60External closing pair is T 1789-G 1906
Stack -1.30External closing pair is T 1790-A 1905
Helix -13.20 8 base pairs.
Multi-loop 2.60External closing pair is A 1791-T 1904
37 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.10External closing pair is A 233-T 1781
Stack -1.30External closing pair is T 234-A 1780
Stack -2.10External closing pair is A 235-T 1779
Stack -3.30External closing pair is G 236-C 1778
Helix -7.80 5 base pairs.
Bulge loop 1.60External closing pair is G 237-C 1777
Stack -2.40External closing pair is T 238-A 1775
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 239-G 1774
Stack -2.40External closing pair is T 240-A 1772
Stack -3.30External closing pair is C 241-G 1771
Stack -2.10External closing pair is C 242-G 1770
Stack -2.10External closing pair is T 243-A 1769
Helix -9.90 5 base pairs.
Multi-loop 4.40External closing pair is G 244-C 1768
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.40External closing pair is T 247-A 1658
Stack -2.10External closing pair is C 248-G 1657
Stack -2.10External closing pair is T 249-A 1656
Stack -2.40External closing pair is G 250-C 1655
Helix -9.00 5 base pairs.
Interior loop 2.70External closing pair is A 251-T 1654
Stack -2.20External closing pair is A 253-T 1651
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 254-G 1650
23 ss bases & 4 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.10External closing pair is T 256-A 1592
Stack -3.30External closing pair is G 257-C 1591
Stack -2.40External closing pair is G 258-C 1590
Stack -0.90External closing pair is A 259-T 1589
Stack -2.10External closing pair is A 260-T 1588
Stack -2.20External closing pair is G 261-C 1587
Stack -0.90External closing pair is T 262-A 1586
Helix -13.90 8 base pairs.
Multi-loop 1.50External closing pair is T 263-A 1585
12 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 2
seq.txt
ΔG = -819.70

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 2.10External closing pair is G 46-C 3102
25 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -3.30External closing pair is C 75-G 1942
Helix -3.30 2 base pairs.
Interior loop 2.30External closing pair is C 76-G 1941
Stack -2.40External closing pair is T 80-A 1936
Stack -3.30External closing pair is C 81-G 1935
Helix -5.70 3 base pairs.
Multi-loop 2.10External closing pair is C 82-G 1934
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Helix -12.50 8 base pairs.
Multi-loop 2.20External closing pair is G 210-C 1913
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1784-C 1911
Stack -2.40External closing pair is T 1785-A 1910
Stack -3.30External closing pair is C 1786-G 1909
Stack -2.10External closing pair is C 1787-G 1908
Stack -1.30External closing pair is T 1788-A 1907
Stack -0.60External closing pair is T 1789-G 1906
Stack -1.30External closing pair is T 1790-A 1905
Helix -13.20 8 base pairs.
Multi-loop 2.60External closing pair is A 1791-T 1904
37 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.10External closing pair is A 233-T 1781
Stack -1.30External closing pair is T 234-A 1780
Stack -2.10External closing pair is A 235-T 1779
Stack -3.30External closing pair is G 236-C 1778
Helix -7.80 5 base pairs.
Bulge loop 1.60External closing pair is G 237-C 1777
Stack -2.40External closing pair is T 238-A 1775
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 239-G 1774
Stack -2.40External closing pair is T 240-A 1772
Stack -3.30External closing pair is C 241-G 1771
Stack -2.10External closing pair is C 242-G 1770
Stack -2.10External closing pair is T 243-A 1769
Helix -9.90 5 base pairs.
Multi-loop 4.40External closing pair is G 244-C 1768
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.40External closing pair is T 247-A 1658
Stack -2.10External closing pair is C 248-G 1657
Stack -2.10External closing pair is T 249-A 1656
Stack -2.40External closing pair is G 250-C 1655
Helix -9.00 5 base pairs.
Interior loop 2.70External closing pair is A 251-T 1654
Stack -2.20External closing pair is A 253-T 1651
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 254-G 1650
23 ss bases & 4 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.10External closing pair is T 256-A 1592
Stack -3.30External closing pair is G 257-C 1591
Stack -2.40External closing pair is G 258-C 1590
Stack -0.90External closing pair is A 259-T 1589
Stack -2.10External closing pair is A 260-T 1588
Stack -2.20External closing pair is G 261-C 1587
Stack -0.90External closing pair is T 262-A 1586
Helix -13.90 8 base pairs.
Multi-loop 1.50External closing pair is T 263-A 1585
12 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is T 90-A 183
Stack -2.20External closing pair is G 91-C 182
Helix -4.30 3 base pairs.
Interior loop 2.70External closing pair is T 92-A 181
Stack -1.00External closing pair is T 96-A 176
Stack -2.50External closing pair is G 97-T 175
Stack -2.10External closing pair is C 98-G 174
Stack -2.10External closing pair is T 99-A 173
Helix -7.70 5 base pairs.
Interior loop 2.70External closing pair is G 100-C 172
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 3
seq.txt
ΔG = -819.00

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 4.80External closing pair is T 211-A 1912
24 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 247-A 1907
Stack -2.10External closing pair is C 248-G 1906
Stack -1.00External closing pair is T 249-A 1905
Stack -1.30External closing pair is G 250-T 1904
Stack -1.10External closing pair is A 251-T 1903
Helix -7.90 6 base pairs.
Multi-loop 1.10External closing pair is T 252-A 1902
12 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 1896
Stack -2.40External closing pair is T 271-A 1895
Stack -2.10External closing pair is C 272-G 1894
Stack -1.30External closing pair is T 273-A 1893
Stack -0.90External closing pair is A 274-T 1892
Helix -8.80 6 base pairs.
Interior loop 1.10External closing pair is A 275-T 1891
Stack -2.40External closing pair is G 277-C 1889
Stack -0.90External closing pair is A 278-T 1888
Helix -3.30 3 base pairs.
Multi-loop 1.10External closing pair is A 279-T 1887
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is C 285-G 1864
Stack -2.40External closing pair is G 286-C 1863
Stack -1.40External closing pair is A 287-T 1862
Stack -1.00External closing pair is T 288-G 1861
Helix -7.20 5 base pairs.
Interior loop 3.80External closing pair is A 289-T 1860
Stack -0.50External closing pair is T 301-G 1849
Stack -0.60External closing pair is T 302-G 1848
Stack -2.40External closing pair is T 303-A 1847
Stack -2.10External closing pair is C 304-G 1846
Helix -5.60 5 base pairs.
Interior loop 1.70External closing pair is A 305-T 1845
Stack -1.30External closing pair is T 307-A 1843
Stack -1.10External closing pair is A 308-T 1842
Stack -0.90External closing pair is T 309-A 1841
Stack -1.30External closing pair is T 310-A 1840
Stack -1.10External closing pair is A 311-T 1839
Stack -0.90External closing pair is T 312-A 1838
Stack -1.30External closing pair is T 313-A 1837
Stack 0.30External closing pair is T 314-G 1836
Helix -7.60 9 base pairs.
Bulge loop 6.50External closing pair is G 315-T 1835
Stack -2.40External closing pair is T 316-A 1816
Stack -2.10External closing pair is C 317-G 1815
Helix -4.50 3 base pairs.
Bulge loop 1.40External closing pair is T 318-A 1814
Stack -3.30External closing pair is C 320-G 1813
Stack -2.10External closing pair is C 321-G 1812
Stack -1.10External closing pair is A 322-T 1811
Stack -1.30External closing pair is T 323-A 1810
Stack -0.90External closing pair is A 324-T 1809
Stack -2.10External closing pair is A 325-T 1808
Stack -2.20External closing pair is G 326-C 1807
Stack -0.90External closing pair is T 327-A 1806
Stack -1.30External closing pair is T 328-A 1805
Helix -15.20 10 base pairs.
Multi-loop 4.50External closing pair is T 329-G 1804
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is T 330-A 1762
Stack -2.10External closing pair is C 331-G 1761
Stack -0.90External closing pair is A 332-T 1760
Stack -0.90External closing pair is A 333-T 1759
Stack -2.10External closing pair is A 334-T 1758
Stack -2.50External closing pair is G 335-C 1757
Stack -1.00External closing pair is T 336-G 1756
Helix -11.90 8 base pairs.
Interior loop 1.70External closing pair is A 337-T 1755
Stack -2.10External closing pair is G 339-T 1753
Stack -2.40External closing pair is G 340-C 1752
Stack -2.20External closing pair is A 341-T 1751
Helix -6.70 4 base pairs.
Interior loop 1.40External closing pair is C 342-G 1750
Stack -1.10External closing pair is A 344-T 1747
Stack -0.90External closing pair is T 345-A 1746
Stack -2.40External closing pair is T 346-A 1745
Helix -4.40 4 base pairs.
Multi-loop 0.50External closing pair is C 347-G 1744
29 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 1116-A 1738
Stack -0.60External closing pair is T 1117-G 1737
Stack -2.10External closing pair is T 1118-A 1736
Stack -3.30External closing pair is G 1119-C 1735
Stack -2.40External closing pair is G 1120-C 1734
Helix -9.70 6 base pairs.
Multi-loop 1.40External closing pair is A 1121-T 1733
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1142-G 1729
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is T 1143-A 1728
Stack -2.10External closing pair is C 1145-G 1726
Stack -2.10External closing pair is A 1146-T 1725
Helix -4.20 3 base pairs.
Bulge loop 1.40External closing pair is G 1147-C 1724
Stack -2.10External closing pair is A 1149-T 1723
Stack -2.40External closing pair is G 1150-C 1722
Stack -1.10External closing pair is A 1151-T 1721
Stack -1.30External closing pair is T 1152-A 1720
Helix -6.90 5 base pairs.
Bulge loop 2.70External closing pair is A 1153-T 1719
Stack -0.90External closing pair is T 1154-A 1717
Stack -1.30External closing pair is T 1155-A 1716
Stack -1.10External closing pair is A 1156-T 1715
Stack -1.30External closing pair is T 1157-A 1714
Stack -1.10External closing pair is A 1158-T 1713
Helix -5.70 6 base pairs.
Multi-loop 1.00External closing pair is T 1159-A 1712
26 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1203-G 1707
Stack -2.50External closing pair is G 1204-C 1706
Stack -1.40External closing pair is T 1205-G 1705
Stack -3.30External closing pair is G 1206-C 1704
Helix -9.60 5 base pairs.
Bulge loop 3.70External closing pair is G 1207-C 1703
Stack -2.40External closing pair is T 1211-A 1702
Stack -2.10External closing pair is C 1212-G 1701
Stack -1.40External closing pair is A 1213-T 1700
Helix -5.90 4 base pairs.
Bulge loop 5.60External closing pair is T 1214-G 1699
Stack -2.40External closing pair is T 1215-A 1691
Stack -2.10External closing pair is C 1216-G 1690
Stack -1.00External closing pair is T 1217-A 1689
Stack -2.10External closing pair is G 1218-T 1688
Stack -3.30External closing pair is G 1219-C 1687
Helix -10.90 6 base pairs.
Multi-loop 2.10External closing pair is G 1220-C 1686
4 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1271-G 1684
Stack -2.10External closing pair is A 1272-T 1683
Stack -2.40External closing pair is G 1273-C 1682
Helix -6.60 4 base pairs.
Multi-loop 2.30External closing pair is A 1274-T 1681
23 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is A 1277-T 1287
Stack -2.50External closing pair is G 1278-C 1286
Helix -4.60 3 base pairs.
Hairpin loop 4.80Closing pair is T 1279-G 1285
Stack -0.90External closing pair is A 1222-T 1268
Stack -0.90External closing pair is A 1223-T 1267
Stack -0.60External closing pair is A 1224-T 1266
Stack -2.50External closing pair is G 1225-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -8.10 7 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.10External closing pair is C 353-G 423
Stack -0.90External closing pair is T 354-A 422
Stack -0.90External closing pair is T 355-A 421
Helix -3.90 4 base pairs.
Bulge loop 1.70External closing pair is T 356-A 420
Stack -3.40External closing pair is G 357-C 418
Helix -3.40 2 base pairs.
Bulge loop 0.50External closing pair is C 358-G 417
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.40External closing pair is G 258-C 267
Helix -2.40 2 base pairs.
Hairpin loop 4.90Closing pair is A 259-T 266
Stack -1.00External closing pair is T 232-G 246
Stack -1.40External closing pair is A 233-T 245
Stack -1.00External closing pair is T 234-G 244
Stack -2.10External closing pair is A 235-T 243
Stack -3.30External closing pair is G 236-C 242
Helix -8.80 6 base pairs.
Hairpin loop 5.70Closing pair is G 237-C 241
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 4
seq.txt
ΔG = -818.50

Structural elementδGInformation
External loop -1.20 18 ss bases & 2 closing helices.
Stack -0.90External closing pair is A 1837-T 3134
Stack -1.10External closing pair is A 1838-T 3133
Stack -1.30External closing pair is T 1839-A 3132
Stack -0.90External closing pair is A 1840-T 3131
Stack -1.10External closing pair is A 1841-T 3130
Helix -5.30 6 base pairs.
Interior loop 1.10External closing pair is T 1842-A 3129
Stack -2.10External closing pair is C 1844-G 3127
Stack -2.10External closing pair is T 1845-A 3126
Stack -2.40External closing pair is G 1846-C 3125
Stack -2.10External closing pair is A 1847-T 3124
Stack -3.30External closing pair is G 1848-C 3123
Stack -2.20External closing pair is G 1849-C 3122
Stack -0.90External closing pair is T 1850-A 3121
Stack -0.90External closing pair is T 1851-A 3120
Helix -16.00 9 base pairs.
Multi-loop 4.60External closing pair is T 1852-A 3119
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1857-A 2665
Stack -2.10External closing pair is C 1858-G 2664
Stack -0.90External closing pair is T 1859-A 2663
Stack -2.10External closing pair is T 1860-A 2662
Helix -7.50 5 base pairs.
Multi-loop 1.40External closing pair is G 1861-C 2661
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.50External closing pair is G 1864-C 1943
Stack -1.50External closing pair is T 1865-G 1942
Helix -4.00 3 base pairs.
Multi-loop 0.30External closing pair is C 1866-G 1941
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1939
Stack -2.40External closing pair is T 1888-A 1938
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 1889-G 1937
Stack -2.10External closing pair is C 1890-G 1935
Stack -0.60External closing pair is T 1891-G 1934
Stack -1.30External closing pair is T 1892-A 1933
Stack -0.60External closing pair is A 1893-T 1932
Helix -4.60 5 base pairs.
Interior loop 0.50External closing pair is G 1894-T 1931
Stack -0.90External closing pair is A 1897-T 1928
Stack -0.90External closing pair is A 1898-T 1927
Stack -0.90External closing pair is A 1899-T 1926
Helix -2.70 4 base pairs.
Interior loop 1.60External closing pair is A 1900-T 1925
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.10External closing pair is T 2-A 1823
Stack -2.20External closing pair is G 3-C 1822
Helix -4.30 3 base pairs.
Interior loop 3.40External closing pair is T 4-A 1821
Stack -0.90External closing pair is T 8-A 1817
Stack -2.40External closing pair is T 9-A 1816
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 10-G 1815
Stack -3.30External closing pair is C 11-G 1813
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 12-G 1812
Stack -1.30External closing pair is T 14-A 1810
Stack -0.90External closing pair is A 15-T 1809
Helix -2.20 3 base pairs.
Multi-loop 2.10External closing pair is A 16-T 1808
8 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 127-A 1805
Stack -3.30External closing pair is C 128-G 1804
Helix -5.70 3 base pairs.
Multi-loop 1.40External closing pair is C 129-G 1803
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 1759-G 1801
Stack -1.00External closing pair is T 1760-A 1800
Stack -1.30External closing pair is G 1761-T 1799
Stack -0.60External closing pair is A 1762-T 1798
Stack -1.40External closing pair is G 1763-T 1797
Stack -0.90External closing pair is T 1764-A 1796
Stack -2.40External closing pair is T 1765-A 1795
Helix -8.20 8 base pairs.
Interior loop 4.40External closing pair is C 1766-G 1794
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is G 132-C 1752
Stack -2.20External closing pair is A 133-T 1751
Helix -4.60 3 base pairs.
Interior loop -0.40External closing pair is C 134-G 1750
Stack -2.10External closing pair is C 136-G 1748
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is A 137-T 1747
Stack -2.40External closing pair is T 139-A 1745
Helix -2.40 2 base pairs.
Multi-loop 1.00External closing pair is C 140-G 1744
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.40External closing pair is C 150-G 1707
Helix -2.40 2 base pairs.
Bulge loop 3.30External closing pair is G 151-C 1706
Stack -1.40External closing pair is T 154-G 1705
Stack -3.30External closing pair is G 155-C 1704
Helix -4.70 3 base pairs.
Interior loop 1.10External closing pair is G 156-C 1703
Stack -2.50External closing pair is G 159-T 1700
Stack -2.10External closing pair is C 160-G 1699
Stack -2.10External closing pair is T 161-A 1698
Stack -3.30External closing pair is G 162-C 1697
Stack -2.40External closing pair is G 163-C 1696
Helix -12.40 6 base pairs.
Interior loop 4.10External closing pair is A 164-T 1695
Stack -2.40External closing pair is T 166-A 1691
Stack -2.10External closing pair is C 167-G 1690
Stack -1.30External closing pair is T 168-A 1689
Helix -5.80 4 base pairs.
Multi-loop 3.40External closing pair is A 169-T 1688
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 198-C 1686
Stack -3.30External closing pair is C 199-G 1685
Stack -1.40External closing pair is C 200-G 1684
Stack -2.10External closing pair is G 201-T 1683
Stack -2.40External closing pair is G 202-C 1682
Helix -12.60 6 base pairs.
Multi-loop 3.30External closing pair is A 203-T 1681
2 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -2.40External closing pair is G 205-C 1663
Stack -2.10External closing pair is A 206-T 1662
Stack -2.20External closing pair is G 207-C 1661
Stack -0.90External closing pair is T 208-A 1660
Helix -7.60 5 base pairs.
Bulge loop 2.90External closing pair is T 209-A 1659
Stack -1.30External closing pair is T 211-A 1658
Stack -0.60External closing pair is T 212-G 1657
Stack -2.10External closing pair is T 213-A 1656
Stack -2.40External closing pair is G 214-C 1655
Stack -0.90External closing pair is A 215-T 1654
Stack -0.90External closing pair is A 216-T 1653
Stack -0.90External closing pair is A 217-T 1652
Helix -9.10 8 base pairs.
Multi-loop 3.30External closing pair is A 218-T 1651
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 220-A 1631
Stack -3.40External closing pair is G 221-C 1630
Helix -5.50 3 base pairs.
Multi-loop -0.50External closing pair is C 222-G 1629
17 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1584-C 1627
Stack -0.90External closing pair is A 1585-T 1626
Stack -2.20External closing pair is A 1586-T 1625
Helix -5.50 4 base pairs.
Bulge loop 5.90External closing pair is C 1587-G 1624
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.20External closing pair is G 237-C 1581
Helix -2.20 2 base pairs.
Interior loop 1.70External closing pair is T 238-A 1580
Stack -2.40External closing pair is T 240-A 1578
Stack -3.30External closing pair is C 241-G 1577
Stack -2.10External closing pair is C 242-G 1576
Stack -2.10External closing pair is T 243-A 1575
Stack -2.20External closing pair is G 244-C 1574
Stack -2.10External closing pair is T 245-A 1573
Helix -14.20 7 base pairs.
Multi-loop 1.10External closing pair is G 246-C 1572
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1554-C 1570
Stack -0.90External closing pair is A 1555-T 1569
Stack -1.10External closing pair is A 1556-T 1568
Helix -4.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1557-A 1567
Stack -2.40External closing pair is G 250-C 1545
Stack -1.40External closing pair is A 251-T 1544
Stack -1.00External closing pair is T 252-G 1543
Helix -4.80 4 base pairs.
Interior loop 4.10External closing pair is A 253-T 1542
Stack -1.10External closing pair is A 255-T 1538
Stack -2.10External closing pair is T 256-A 1537
Stack -3.30External closing pair is G 257-C 1536
Stack -2.40External closing pair is G 258-C 1535
Stack -0.90External closing pair is A 259-T 1534
Stack -0.60External closing pair is A 260-T 1533
Stack -1.40External closing pair is G 261-T 1532
Helix -11.80 8 base pairs.
Bulge loop 2.50External closing pair is T 262-A 1531
Stack -2.20External closing pair is A 264-T 1530
Stack -2.10External closing pair is C 265-G 1529
Helix -4.30 3 base pairs.
Bulge loop 2.50External closing pair is T 266-A 1528
Stack -0.60External closing pair is A 268-T 1527
Stack -2.50External closing pair is G 269-T 1526
Stack -2.10External closing pair is C 270-G 1525
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is T 271-A 1524
Stack -1.00External closing pair is T 273-G 1522
Stack -0.90External closing pair is A 274-T 1521
Stack -0.90External closing pair is A 275-T 1520
Helix -2.80 4 base pairs.
Multi-loop 0.40External closing pair is A 276-T 1519
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -2.40External closing pair is G 21-C 124
Stack -1.10External closing pair is A 22-T 123
Stack -1.30External closing pair is T 23-A 122
Helix -4.80 4 base pairs.
Bulge loop 1.70External closing pair is A 24-T 121
Stack -2.50External closing pair is G 25-C 119
Stack -1.00External closing pair is T 26-G 118
Helix -3.50 3 base pairs.
Bulge loop 4.10External closing pair is A 27-T 117
Stack -2.10External closing pair is C 28-G 112
Stack -1.40External closing pair is A 29-T 111
Stack -0.60External closing pair is T 30-G 110
Helix -4.10 4 base pairs.
Interior loop -2.90External closing pair is T 31-A 109
Stack -1.40External closing pair is G 34-T 106
Stack -1.30External closing pair is T 35-A 105
Stack -0.90External closing pair is A 36-T 104
Stack -0.90External closing pair is A 37-T 103
Stack -0.60External closing pair is A 38-T 102
Stack -2.50External closing pair is G 39-T 101
Helix -7.60 7 base pairs.
Multi-loop 1.80External closing pair is C 40-G 100
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 77-G 97
Stack -0.90External closing pair is A 78-T 96
Stack -1.40External closing pair is A 79-T 95
Helix -4.40 4 base pairs.
Interior loop 3.70External closing pair is T 80-G 94
Stack -2.20External closing pair is A 83-T 92
Stack -1.40External closing pair is C 84-G 91
Helix -3.60 3 base pairs.
Hairpin loop 4.50Closing pair is G 85-T 90
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 5
seq.txt
ΔG = -818.40

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Helix -12.50 8 base pairs.
Multi-loop 2.20External closing pair is G 210-C 1913
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1784-C 1911
Stack -2.40External closing pair is T 1785-A 1910
Stack -3.30External closing pair is C 1786-G 1909
Stack -2.10External closing pair is C 1787-G 1908
Stack -1.30External closing pair is T 1788-A 1907
Stack -0.60External closing pair is T 1789-G 1906
Stack -1.30External closing pair is T 1790-A 1905
Helix -13.20 8 base pairs.
Multi-loop 2.60External closing pair is A 1791-T 1904
37 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.10External closing pair is A 233-T 1781
Stack -1.30External closing pair is T 234-A 1780
Stack -2.10External closing pair is A 235-T 1779
Stack -3.30External closing pair is G 236-C 1778
Helix -7.80 5 base pairs.
Bulge loop 1.60External closing pair is G 237-C 1777
Stack -2.40External closing pair is T 238-A 1775
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 239-G 1774
Stack -2.40External closing pair is T 240-A 1772
Stack -3.30External closing pair is C 241-G 1771
Stack -2.10External closing pair is C 242-G 1770
Stack -2.10External closing pair is T 243-A 1769
Helix -9.90 5 base pairs.
Multi-loop 4.40External closing pair is G 244-C 1768
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.40External closing pair is T 247-A 1658
Stack -2.10External closing pair is C 248-G 1657
Stack -2.10External closing pair is T 249-A 1656
Stack -2.40External closing pair is G 250-C 1655
Helix -9.00 5 base pairs.
Multi-loop 5.10External closing pair is A 251-T 1654
10 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.20External closing pair is A 253-T 1393
Stack -2.10External closing pair is C 254-G 1392
Stack -1.40External closing pair is A 255-T 1391
Stack -1.40External closing pair is T 256-G 1390
Stack -3.30External closing pair is G 257-C 1389
Stack -2.40External closing pair is G 258-C 1388
Stack -0.90External closing pair is A 259-T 1387
Helix -13.70 8 base pairs.
Bulge loop 4.20External closing pair is A 260-T 1386
Stack -1.40External closing pair is G 261-T 1382
Stack -1.30External closing pair is T 262-A 1381
Stack -1.00External closing pair is T 263-G 1380
Stack -2.20External closing pair is A 264-T 1379
Stack -2.10External closing pair is C 265-G 1378
Helix -8.00 6 base pairs.
Multi-loop 2.00External closing pair is T 266-A 1377
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 6
seq.txt
ΔG = -818.40

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Helix -12.50 8 base pairs.
Multi-loop 2.20External closing pair is G 210-C 1913
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1784-C 1911
Stack -2.40External closing pair is T 1785-A 1910
Stack -3.30External closing pair is C 1786-G 1909
Stack -2.10External closing pair is C 1787-G 1908
Stack -1.30External closing pair is T 1788-A 1907
Stack -0.60External closing pair is T 1789-G 1906
Stack -1.30External closing pair is T 1790-A 1905
Helix -13.20 8 base pairs.
Multi-loop 2.60External closing pair is A 1791-T 1904
37 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.10External closing pair is A 233-T 1781
Stack -1.30External closing pair is T 234-A 1780
Stack -2.10External closing pair is A 235-T 1779
Stack -3.30External closing pair is G 236-C 1778
Helix -7.80 5 base pairs.
Bulge loop 1.60External closing pair is G 237-C 1777
Stack -2.40External closing pair is T 238-A 1775
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 239-G 1774
Stack -2.40External closing pair is T 240-A 1772
Stack -3.30External closing pair is C 241-G 1771
Stack -2.10External closing pair is C 242-G 1770
Stack -2.10External closing pair is T 243-A 1769
Helix -9.90 5 base pairs.
Multi-loop 4.40External closing pair is G 244-C 1768
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.40External closing pair is T 247-A 1658
Stack -2.10External closing pair is C 248-G 1657
Stack -2.10External closing pair is T 249-A 1656
Stack -2.40External closing pair is G 250-C 1655
Helix -9.00 5 base pairs.
Interior loop 2.70External closing pair is A 251-T 1654
Stack -2.20External closing pair is A 253-T 1651
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 254-G 1650
23 ss bases & 4 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.10External closing pair is T 256-A 1592
Stack -3.30External closing pair is G 257-C 1591
Stack -2.40External closing pair is G 258-C 1590
Stack -0.90External closing pair is A 259-T 1589
Stack -2.10External closing pair is A 260-T 1588
Stack -2.20External closing pair is G 261-C 1587
Stack -0.90External closing pair is T 262-A 1586
Helix -13.90 8 base pairs.
Multi-loop 1.50External closing pair is T 263-A 1585
12 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 3.50External closing pair is T 292-A 1353
17 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -1.30External closing pair is T 307-A 1156
Helix -1.30 2 base pairs.
Interior loop 1.20External closing pair is A 308-T 1155
Stack -1.30External closing pair is T 310-A 1153
Stack -1.10External closing pair is A 311-T 1152
Stack -1.30External closing pair is T 312-A 1151
Stack -0.60External closing pair is T 313-G 1150
Stack -2.10External closing pair is T 314-A 1149
Stack -2.50External closing pair is G 315-C 1148
Helix -8.90 7 base pairs.
Multi-loop 3.70External closing pair is T 316-G 1147
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 334-T 1143
Stack -2.20External closing pair is G 335-C 1142
Helix -4.30 3 base pairs.
Interior loop 1.90External closing pair is T 336-A 1141
Stack -3.30External closing pair is G 339-C 1138
Stack -2.40External closing pair is G 340-C 1137
Stack -2.20External closing pair is A 341-T 1136
Stack -2.10External closing pair is C 342-G 1135
Stack -0.90External closing pair is A 343-T 1134
Stack -1.40External closing pair is A 344-T 1133
Stack -0.60External closing pair is T 345-G 1132
Stack -2.40External closing pair is T 346-A 1131
Helix -15.30 9 base pairs.
Interior loop 0.70External closing pair is C 347-G 1130
Stack -2.10External closing pair is C 353-G 1125
Stack -1.30External closing pair is T 354-A 1124
Stack -0.60External closing pair is T 355-G 1123
Helix -4.00 4 base pairs.
Multi-loop 1.70External closing pair is T 356-A 1122
5 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 317-G 326
Helix -2.10 2 base pairs.
Hairpin loop 4.90Closing pair is T 318-A 325
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 7
seq.txt
ΔG = -817.50

Structural elementδGInformation
External loop -0.40 5 ss bases & 2 closing helices.
Stack -0.90External closing pair is A 1837-T 3134
Stack -1.10External closing pair is A 1838-T 3133
Stack -1.30External closing pair is T 1839-A 3132
Stack -0.90External closing pair is A 1840-T 3131
Stack -1.10External closing pair is A 1841-T 3130
Helix -5.30 6 base pairs.
Interior loop 1.10External closing pair is T 1842-A 3129
Stack -2.10External closing pair is C 1844-G 3127
Stack -2.10External closing pair is T 1845-A 3126
Stack -2.40External closing pair is G 1846-C 3125
Stack -2.10External closing pair is A 1847-T 3124
Stack -3.30External closing pair is G 1848-C 3123
Stack -2.20External closing pair is G 1849-C 3122
Stack -0.90External closing pair is T 1850-A 3121
Stack -0.90External closing pair is T 1851-A 3120
Helix -16.00 9 base pairs.
Multi-loop 4.60External closing pair is T 1852-A 3119
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1857-A 2665
Stack -2.10External closing pair is C 1858-G 2664
Stack -0.90External closing pair is T 1859-A 2663
Stack -2.10External closing pair is T 1860-A 2662
Helix -7.50 5 base pairs.
Multi-loop 1.40External closing pair is G 1861-C 2661
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.50External closing pair is G 1864-C 1943
Stack -1.50External closing pair is T 1865-G 1942
Helix -4.00 3 base pairs.
Multi-loop 0.30External closing pair is C 1866-G 1941
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1939
Stack -2.40External closing pair is T 1888-A 1938
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 1889-G 1937
Stack -2.10External closing pair is C 1890-G 1935
Stack -0.60External closing pair is T 1891-G 1934
Stack -1.30External closing pair is T 1892-A 1933
Stack -0.60External closing pair is A 1893-T 1932
Helix -4.60 5 base pairs.
Interior loop 0.50External closing pair is G 1894-T 1931
Stack -0.90External closing pair is A 1897-T 1928
Stack -0.90External closing pair is A 1898-T 1927
Stack -0.90External closing pair is A 1899-T 1926
Helix -2.70 4 base pairs.
Interior loop 1.60External closing pair is A 1900-T 1925
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -1.10External closing pair is A 1-T 1835
Stack -2.10External closing pair is T 2-A 1834
Stack -2.20External closing pair is G 3-C 1833
Helix -5.40 4 base pairs.
Multi-loop 1.90External closing pair is T 4-A 1832
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1815
Stack -2.40External closing pair is T 166-A 1814
Stack -2.10External closing pair is C 167-G 1813
Stack -1.00External closing pair is T 168-G 1812
Helix -7.60 5 base pairs.
Interior loop 3.70External closing pair is A 169-T 1811
Stack -2.10External closing pair is A 173-T 1808
Stack -2.20External closing pair is G 174-C 1807
Helix -4.30 3 base pairs.
Bulge loop 3.80External closing pair is T 175-A 1806
Stack -2.40External closing pair is T 178-A 1805
Stack -2.10External closing pair is C 179-G 1804
Stack -1.00External closing pair is T 180-G 1803
Stack -2.20External closing pair is A 181-T 1802
Helix -7.70 5 base pairs.
Multi-loop 3.00External closing pair is C 182-G 1801
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.20External closing pair is A 185-T 1764
Stack -2.10External closing pair is C 186-G 1763
Stack -1.30External closing pair is T 187-A 1762
Stack -1.00External closing pair is T 188-G 1761
Stack -0.90External closing pair is A 189-T 1760
Helix -7.50 6 base pairs.
Bulge loop 1.70External closing pair is A 190-T 1759
Stack -3.40External closing pair is G 191-C 1757
Stack -2.10External closing pair is C 192-G 1756
Stack -1.10External closing pair is A 193-T 1755
Stack -1.30External closing pair is T 194-A 1754
Helix -7.90 5 base pairs.
Multi-loop 2.30External closing pair is A 195-T 1753
21 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.40External closing pair is G 198-C 1686
Stack -3.30External closing pair is C 199-G 1685
Stack -1.40External closing pair is C 200-G 1684
Stack -2.10External closing pair is G 201-T 1683
Stack -2.40External closing pair is G 202-C 1682
Helix -12.60 6 base pairs.
Multi-loop 3.30External closing pair is A 203-T 1681
2 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -2.40External closing pair is G 205-C 1663
Stack -2.10External closing pair is A 206-T 1662
Stack -2.20External closing pair is G 207-C 1661
Stack -0.90External closing pair is T 208-A 1660
Helix -7.60 5 base pairs.
Bulge loop 2.90External closing pair is T 209-A 1659
Stack -1.30External closing pair is T 211-A 1658
Stack -0.60External closing pair is T 212-G 1657
Stack -2.10External closing pair is T 213-A 1656
Stack -2.40External closing pair is G 214-C 1655
Stack -0.90External closing pair is A 215-T 1654
Stack -0.90External closing pair is A 216-T 1653
Stack -0.90External closing pair is A 217-T 1652
Helix -9.10 8 base pairs.
Multi-loop 3.30External closing pair is A 218-T 1651
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 220-A 1631
Stack -3.40External closing pair is G 221-C 1630
Helix -5.50 3 base pairs.
Multi-loop -0.50External closing pair is C 222-G 1629
17 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1584-C 1627
Stack -0.90External closing pair is A 1585-T 1626
Stack -2.20External closing pair is A 1586-T 1625
Helix -5.50 4 base pairs.
Bulge loop 5.90External closing pair is C 1587-G 1624
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.20External closing pair is G 237-C 1581
Helix -2.20 2 base pairs.
Interior loop 1.70External closing pair is T 238-A 1580
Stack -2.40External closing pair is T 240-A 1578
Stack -3.30External closing pair is C 241-G 1577
Stack -2.10External closing pair is C 242-G 1576
Stack -2.10External closing pair is T 243-A 1575
Stack -2.20External closing pair is G 244-C 1574
Stack -2.10External closing pair is T 245-A 1573
Helix -14.20 7 base pairs.
Multi-loop 1.10External closing pair is G 246-C 1572
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1554-C 1570
Stack -0.90External closing pair is A 1555-T 1569
Stack -1.10External closing pair is A 1556-T 1568
Helix -4.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1557-A 1567
Stack -2.40External closing pair is G 250-C 1545
Stack -1.40External closing pair is A 251-T 1544
Stack -1.00External closing pair is T 252-G 1543
Helix -4.80 4 base pairs.
Interior loop 4.10External closing pair is A 253-T 1542
Stack -1.10External closing pair is A 255-T 1538
Stack -2.10External closing pair is T 256-A 1537
Stack -3.30External closing pair is G 257-C 1536
Stack -2.40External closing pair is G 258-C 1535
Stack -0.90External closing pair is A 259-T 1534
Stack -0.60External closing pair is A 260-T 1533
Stack -1.40External closing pair is G 261-T 1532
Helix -11.80 8 base pairs.
Bulge loop 2.50External closing pair is T 262-A 1531
Stack -2.20External closing pair is A 264-T 1530
Stack -2.10External closing pair is C 265-G 1529
Helix -4.30 3 base pairs.
Bulge loop 2.50External closing pair is T 266-A 1528
Stack -0.60External closing pair is A 268-T 1527
Stack -2.50External closing pair is G 269-T 1526
Stack -2.10External closing pair is C 270-G 1525
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is T 271-A 1524
Stack -1.00External closing pair is T 273-G 1522
Stack -0.90External closing pair is A 274-T 1521
Stack -0.90External closing pair is A 275-T 1520
Helix -2.80 4 base pairs.
Multi-loop 0.40External closing pair is A 276-T 1519
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 5-G 162
Helix -2.10 2 base pairs.
Bulge loop 1.60External closing pair is A 6-T 161
Stack -2.10External closing pair is C 7-G 159
Stack -0.90External closing pair is T 8-A 158
Stack -2.40External closing pair is T 9-A 157
Stack -3.30External closing pair is C 10-G 156
Helix -8.70 5 base pairs.
Multi-loop 0.90External closing pair is C 11-G 155
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.40External closing pair is G 21-C 124
Stack -1.10External closing pair is A 22-T 123
Stack -1.30External closing pair is T 23-A 122
Helix -4.80 4 base pairs.
Bulge loop 1.70External closing pair is A 24-T 121
Stack -2.50External closing pair is G 25-C 119
Stack -1.00External closing pair is T 26-G 118
Helix -3.50 3 base pairs.
Bulge loop 4.10External closing pair is A 27-T 117
Stack -2.10External closing pair is C 28-G 112
Stack -1.40External closing pair is A 29-T 111
Stack -0.60External closing pair is T 30-G 110
Helix -4.10 4 base pairs.
Interior loop -2.90External closing pair is T 31-A 109
Stack -1.40External closing pair is G 34-T 106
Stack -1.30External closing pair is T 35-A 105
Stack -0.90External closing pair is A 36-T 104
Stack -0.90External closing pair is A 37-T 103
Stack -0.60External closing pair is A 38-T 102
Stack -2.50External closing pair is G 39-T 101
Helix -7.60 7 base pairs.
Multi-loop 1.80External closing pair is C 40-G 100
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 77-G 97
Stack -0.90External closing pair is A 78-T 96
Stack -1.40External closing pair is A 79-T 95
Helix -4.40 4 base pairs.
Interior loop 3.70External closing pair is T 80-G 94
Stack -2.20External closing pair is A 83-T 92
Stack -1.40External closing pair is C 84-G 91
Helix -3.60 3 base pairs.
Hairpin loop 4.50Closing pair is G 85-T 90
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 8
seq.txt
ΔG = -817.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.90External closing pair is T 384-G 2030
7 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 525-C 1990
Stack -2.10External closing pair is C 526-G 1989
Stack -0.90External closing pair is A 527-T 1988
Stack -1.10External closing pair is A 528-T 1987
Stack -0.90External closing pair is T 529-A 1986
Stack -0.90External closing pair is T 530-A 1985
Stack -0.90External closing pair is T 531-A 1984
Helix -10.20 8 base pairs.
Multi-loop 2.80External closing pair is T 532-A 1983
8 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 1941-C 1980
Helix -3.30 2 base pairs.
Interior loop 3.00External closing pair is G 1942-C 1979
Stack -2.20External closing pair is A 1944-T 1976
Stack -2.10External closing pair is C 1945-G 1975
Helix -4.30 3 base pairs.
Interior loop 4.10External closing pair is T 1946-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Bulge loop 6.50External closing pair is G 611-T 1892
Stack -0.90External closing pair is T 612-A 1874
Stack -1.00External closing pair is T 613-A 1873
Stack -2.50External closing pair is G 614-T 1872
Stack -3.30External closing pair is C 615-G 1871
Helix -7.70 5 base pairs.
Bulge loop 1.40External closing pair is C 616-G 1870
Stack -2.20External closing pair is G 618-C 1869
Stack -0.90External closing pair is T 619-A 1868
Helix -3.10 3 base pairs.
Interior loop 4.00External closing pair is T 620-A 1867
Stack -1.40External closing pair is A 623-T 1865
Stack -1.40External closing pair is T 624-G 1864
Stack -2.40External closing pair is G 625-C 1863
Stack -2.20External closing pair is A 626-T 1862
Stack -2.10External closing pair is C 627-G 1861
Helix -9.50 6 base pairs.
Multi-loop 4.10External closing pair is A 628-T 1860
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.30External closing pair is G 630-T 1789
Stack -2.10External closing pair is A 631-T 1788
Stack -3.30External closing pair is G 632-C 1787
Stack -2.40External closing pair is G 633-C 1786
Helix -9.10 5 base pairs.
Bulge loop 4.10External closing pair is A 634-T 1785
Stack -2.40External closing pair is C 639-G 1784
Stack -3.30External closing pair is G 640-C 1783
Stack -2.40External closing pair is G 641-C 1782
Stack -1.10External closing pair is A 642-T 1781
Helix -9.20 5 base pairs.
Interior loop 3.10External closing pair is T 643-A 1780
Stack -2.20External closing pair is G 648-C 1773
Stack -1.30External closing pair is T 649-A 1772
Stack -0.50External closing pair is T 650-G 1771
Stack -0.60External closing pair is T 651-G 1770
Stack -2.10External closing pair is T 652-A 1769
Stack -3.30External closing pair is G 653-C 1768
Helix -10.00 7 base pairs.
Multi-loop 4.00External closing pair is G 654-C 1767
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 676-T 1765
Stack -2.20External closing pair is A 677-T 1764
Stack -2.10External closing pair is C 678-G 1763
Stack -2.40External closing pair is T 679-A 1762
Helix -7.60 5 base pairs.
Interior loop 2.70External closing pair is C 680-G 1761
Stack -3.40External closing pair is G 682-C 1757
Stack -2.10External closing pair is C 683-G 1756
Stack -1.10External closing pair is A 684-T 1755
Helix -6.60 4 base pairs.
Bulge loop 3.80External closing pair is T 685-A 1754
Stack -2.50External closing pair is G 686-T 1751
Stack -2.40External closing pair is C 687-G 1750
Stack -3.40External closing pair is G 688-C 1749
Stack -2.10External closing pair is C 689-G 1748
Stack -1.10External closing pair is A 690-T 1747
Helix -11.50 6 base pairs.
Multi-loop 4.10External closing pair is T 691-A 1746
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.30External closing pair is T 692-A 1716
Stack -1.10External closing pair is A 693-T 1715
Stack -1.30External closing pair is T 694-A 1714
Stack -1.10External closing pair is A 695-T 1713
Stack -1.30External closing pair is T 696-A 1712
Stack -0.60External closing pair is T 697-G 1711
Helix -6.70 7 base pairs.
Interior loop 1.70External closing pair is T 698-A 1710
Stack -2.40External closing pair is T 700-A 1708
Stack -2.40External closing pair is C 701-G 1707
Stack -3.40External closing pair is G 702-C 1706
Helix -8.20 4 base pairs.
Interior loop 0.40External closing pair is C 703-G 1705
Stack -2.20External closing pair is G 705-C 1703
Helix -2.20 2 base pairs.
Bulge loop 1.40External closing pair is T 706-A 1702
Stack -2.10External closing pair is C 708-G 1701
Stack -2.20External closing pair is A 709-T 1700
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 710-G 1699
14 ss bases & 5 closing helices.
Stack -2.40External closing pair is G 1648-C 1696
Stack -2.10External closing pair is A 1649-T 1695
Stack -2.20External closing pair is G 1650-C 1694
Stack -0.90External closing pair is T 1651-A 1693
Stack -0.90External closing pair is T 1652-A 1692
Stack -1.30External closing pair is T 1653-A 1691
Helix -9.80 7 base pairs.
Bulge loop 4.50External closing pair is T 1654-G 1690
Stack -2.10External closing pair is C 1655-G 1684
Stack -2.10External closing pair is A 1656-T 1683
Stack -2.40External closing pair is G 1657-C 1682
Stack -0.90External closing pair is A 1658-T 1681
Helix -7.50 5 base pairs.
Bulge loop 4.10External closing pair is A 1659-T 1680
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1071-C 1630
Stack -2.10External closing pair is C 1072-G 1629
Stack -2.10External closing pair is T 1073-A 1628
Stack -1.50External closing pair is G 1074-C 1627
Stack -1.30External closing pair is G 1075-T 1626
Helix -10.40 6 base pairs.
Bulge loop 4.20External closing pair is A 1076-T 1625
Stack -1.00External closing pair is T 1080-G 1624
Stack -0.90External closing pair is A 1081-T 1623
Stack -2.20External closing pair is A 1082-T 1622
Stack -2.10External closing pair is C 1083-G 1621
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is A 1084-T 1620
Stack -2.40External closing pair is T 1089-A 1616
Stack -2.10External closing pair is C 1090-G 1615
Helix -4.50 3 base pairs.
Interior loop 0.80External closing pair is A 1091-T 1614
Stack -2.40External closing pair is G 1094-C 1611
Stack -1.10External closing pair is A 1095-T 1610
Stack -2.40External closing pair is T 1096-A 1609
Helix -5.90 4 base pairs.
Multi-loop 0.50External closing pair is C 1097-G 1608
23 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1117-A 1593
Stack -2.10External closing pair is T 1118-A 1592
Stack -3.30External closing pair is G 1119-C 1591
Stack -2.40External closing pair is G 1120-C 1590
Stack -0.90External closing pair is A 1121-T 1589
Stack -2.10External closing pair is A 1122-T 1588
Helix -11.70 7 base pairs.
Multi-loop 0.50External closing pair is G 1123-C 1587
17 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -0.90External closing pair is T 720-A 1070
Stack -1.30External closing pair is T 721-A 1069
Stack -1.00External closing pair is T 722-G 1068
Stack -1.10External closing pair is A 723-T 1067
Stack -0.90External closing pair is T 724-A 1066
Stack -2.10External closing pair is T 725-A 1065
Stack -2.40External closing pair is G 726-C 1064
Helix -9.70 8 base pairs.
Interior loop 1.70External closing pair is A 727-T 1063
Stack -1.30External closing pair is G 729-T 1061
Stack -0.90External closing pair is A 730-T 1060
Stack -0.90External closing pair is A 731-T 1059
Helix -3.10 4 base pairs.
Interior loop 2.50External closing pair is A 732-T 1058
Stack -3.30External closing pair is G 735-C 1056
Stack -3.40External closing pair is G 736-C 1055
Helix -6.70 3 base pairs.
Multi-loop 1.60External closing pair is C 737-G 1054
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -1.30External closing pair is T 746-A 772
Stack -0.90External closing pair is A 747-T 771
Stack -0.60External closing pair is A 748-T 770
Stack -1.40External closing pair is G 749-T 769
Helix -4.20 5 base pairs.
Interior loop 3.70External closing pair is T 750-A 768
Stack -1.00External closing pair is T 752-A 765
Stack -2.10External closing pair is G 753-T 764
Stack -2.20External closing pair is G 754-C 763
Stack -2.40External closing pair is T 755-A 762
Helix -7.70 5 base pairs.
Hairpin loop 4.20Closing pair is C 756-G 761
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Interior loop -0.40External closing pair is T 387-A 523
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 9
seq.txt
ΔG = -816.90

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 4.00External closing pair is T 211-A 1912
18 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -3.40External closing pair is G 221-C 1879
Stack -2.10External closing pair is C 222-G 1878
Helix -5.50 3 base pairs.
Multi-loop 4.00External closing pair is A 223-T 1877
14 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1322-A 1875
Stack -0.90External closing pair is T 1323-A 1874
Stack -1.30External closing pair is T 1324-A 1873
Stack -2.20External closing pair is A 1325-T 1872
Helix -5.30 5 base pairs.
Bulge loop 0.50External closing pair is C 1326-G 1871
Stack -2.40External closing pair is C 1328-G 1870
Stack -2.20External closing pair is G 1329-C 1869
Stack -0.90External closing pair is T 1330-A 1868
Helix -5.50 4 base pairs.
Multi-loop 2.10External closing pair is T 1331-A 1867
14 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1360-C 1863
Stack -2.50External closing pair is G 1361-T 1862
Stack -2.10External closing pair is C 1362-G 1861
Stack -0.90External closing pair is A 1363-T 1860
Helix -7.00 5 base pairs.
Multi-loop 4.20External closing pair is A 1364-T 1859
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 1427-T 1850
Stack -3.30External closing pair is C 1428-G 1849
Helix -5.50 3 base pairs.
Bulge loop 1.70External closing pair is C 1429-G 1848
Stack -2.40External closing pair is T 1431-A 1847
Stack -2.10External closing pair is C 1432-G 1846
Stack -2.10External closing pair is A 1433-T 1845
Helix -6.60 4 base pairs.
Interior loop 3.70External closing pair is G 1434-C 1844
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -1.30External closing pair is T 234-A 1318
Stack -2.10External closing pair is A 235-T 1317
Helix -3.40 3 base pairs.
Bulge loop 0.50External closing pair is G 236-C 1316
Stack -2.20External closing pair is G 237-C 1314
Stack -2.40External closing pair is T 238-A 1313
Helix -4.60 3 base pairs.
Multi-loop 1.50External closing pair is C 239-G 1312
24 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1291-T 1306
Stack -1.30External closing pair is T 1292-A 1305
Stack -2.20External closing pair is A 1293-T 1304
Stack -2.10External closing pair is C 1294-G 1303
Helix -6.70 5 base pairs.
Hairpin loop 5.10Closing pair is T 1295-G 1302
Stack -2.10External closing pair is C 242-G 1273
Stack -2.10External closing pair is T 243-A 1272
Stack -2.20External closing pair is G 244-C 1271
Stack -2.10External closing pair is T 245-A 1270
Helix -8.50 5 base pairs.
Interior loop 3.20External closing pair is G 246-C 1269
Stack -2.20External closing pair is A 253-T 1265
Stack -2.10External closing pair is C 254-G 1264
Stack -1.10External closing pair is A 255-T 1263
Stack -1.00External closing pair is T 256-A 1262
Stack -0.50External closing pair is G 257-T 1261
Stack -1.30External closing pair is G 258-T 1260
Helix -8.20 7 base pairs.
Interior loop 1.10External closing pair is A 259-T 1259
Stack -2.20External closing pair is G 261-C 1257
Stack -0.90External closing pair is T 262-A 1256
Helix -3.10 3 base pairs.
Interior loop 2.50External closing pair is T 263-A 1255
Stack -2.40External closing pair is T 266-A 1252
Stack -2.10External closing pair is C 267-G 1251
Stack -2.10External closing pair is A 268-T 1250
Helix -6.60 4 base pairs.
Multi-loop 2.50External closing pair is G 269-C 1249
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is G 1218-T 1247
Helix -2.10 2 base pairs.
Interior loop -1.00External closing pair is G 1219-C 1246
Stack -0.90External closing pair is A 1221-T 1244
Stack -0.90External closing pair is A 1222-T 1243
Stack -0.90External closing pair is A 1223-T 1242
Stack -2.10External closing pair is A 1224-T 1241
Helix -4.80 5 base pairs.
Bulge loop 1.40External closing pair is G 1225-C 1240
Stack -1.40External closing pair is A 1227-T 1239
Stack -1.50External closing pair is T 1228-G 1238
Stack -2.10External closing pair is C 1229-G 1237
Stack -0.60External closing pair is A 1230-T 1236
Helix -5.60 5 base pairs.
Hairpin loop 6.20Closing pair is G 1231-T 1235
Stack -2.40External closing pair is G 277-C 1212
Helix -2.40 2 base pairs.
Bulge loop 2.90External closing pair is A 278-T 1211
Stack -2.10External closing pair is A 279-T 1209
Stack -3.40External closing pair is G 280-C 1208
Stack -3.30External closing pair is C 281-G 1207
Stack -1.40External closing pair is C 282-G 1206
Stack -2.50External closing pair is G 283-T 1205
Helix -12.70 6 base pairs.
Multi-loop 0.70External closing pair is C 284-G 1204
30 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is C 298-G 1165
Stack -2.10External closing pair is C 299-G 1164
Stack -0.90External closing pair is T 300-A 1163
Helix -6.30 4 base pairs.
Interior loop 2.50External closing pair is T 301-A 1162
Stack -1.30External closing pair is T 307-A 1156
Helix -1.30 2 base pairs.
Interior loop 1.20External closing pair is A 308-T 1155
Stack -1.30External closing pair is T 310-A 1153
Stack -1.10External closing pair is A 311-T 1152
Stack -1.30External closing pair is T 312-A 1151
Stack -0.60External closing pair is T 313-G 1150
Stack -2.10External closing pair is T 314-A 1149
Stack -2.50External closing pair is G 315-C 1148
Helix -8.90 7 base pairs.
Multi-loop 3.70External closing pair is T 316-G 1147
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 334-T 1143
Stack -2.20External closing pair is G 335-C 1142
Helix -4.30 3 base pairs.
Interior loop 1.90External closing pair is T 336-A 1141
Stack -3.30External closing pair is G 339-C 1138
Stack -2.40External closing pair is G 340-C 1137
Stack -2.20External closing pair is A 341-T 1136
Stack -2.10External closing pair is C 342-G 1135
Stack -0.90External closing pair is A 343-T 1134
Stack -1.40External closing pair is A 344-T 1133
Stack -0.60External closing pair is T 345-G 1132
Stack -2.40External closing pair is T 346-A 1131
Helix -15.30 9 base pairs.
Interior loop 0.70External closing pair is C 347-G 1130
Stack -2.10External closing pair is C 353-G 1125
Stack -1.30External closing pair is T 354-A 1124
Stack -0.60External closing pair is T 355-G 1123
Helix -4.00 4 base pairs.
Multi-loop 1.70External closing pair is T 356-A 1122
5 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 317-G 326
Helix -2.10 2 base pairs.
Hairpin loop 4.90Closing pair is T 318-A 325
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 10
seq.txt
ΔG = -816.30

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 4.00External closing pair is T 211-A 1912
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1314-G 1908
Stack -2.40External closing pair is T 1315-A 1907
Stack -2.10External closing pair is C 1316-G 1906
Stack -1.30External closing pair is T 1317-A 1905
Helix -7.90 5 base pairs.
Interior loop 3.40External closing pair is A 1318-T 1904
Stack -0.90External closing pair is T 1322-A 1900
Stack -0.90External closing pair is T 1323-A 1899
Helix -1.80 3 base pairs.
Interior loop 1.10External closing pair is T 1324-A 1898
Stack -2.10External closing pair is C 1326-G 1896
Stack -2.40External closing pair is T 1327-A 1895
Helix -4.50 3 base pairs.
Multi-loop 2.00External closing pair is C 1328-G 1894
19 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1355-T 1885
Stack -1.30External closing pair is T 1356-A 1884
Helix -2.40 3 base pairs.
Interior loop 1.20External closing pair is A 1357-T 1883
Stack -2.10External closing pair is T 1359-A 1881
Stack -3.30External closing pair is G 1360-C 1880
Stack -3.40External closing pair is G 1361-C 1879
Stack -2.10External closing pair is C 1362-G 1878
Helix -10.90 5 base pairs.
Multi-loop 3.20External closing pair is A 1363-T 1877
11 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1426-A 1873
Stack -2.20External closing pair is A 1427-T 1872
Stack -3.30External closing pair is C 1428-G 1871
Helix -6.80 4 base pairs.
Multi-loop 1.60External closing pair is C 1429-G 1870
11 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1853-G 1864
Stack -2.40External closing pair is G 1854-C 1863
Helix -4.80 3 base pairs.
Hairpin loop 5.10Closing pair is A 1855-T 1862
Stack -2.40External closing pair is T 1431-A 1847
Stack -2.10External closing pair is C 1432-G 1846
Stack -2.10External closing pair is A 1433-T 1845
Helix -6.60 4 base pairs.
Interior loop 3.70External closing pair is G 1434-C 1844
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -0.90External closing pair is T 1339-A 1353
Stack -0.90External closing pair is T 1340-A 1352
Stack -1.30External closing pair is T 1341-A 1351
Stack -1.10External closing pair is A 1342-T 1350
Helix -4.20 5 base pairs.
Hairpin loop 5.60Closing pair is T 1343-A 1349
Interior loop -2.90External closing pair is T 212-A 1313
Stack -0.90External closing pair is A 215-T 1310
Stack -0.90External closing pair is A 216-T 1309
Helix -1.80 3 base pairs.
Interior loop 1.70External closing pair is A 217-T 1308
Stack -1.10External closing pair is A 219-T 1306
Stack -1.00External closing pair is T 220-A 1305
Stack -2.50External closing pair is G 221-T 1304
Helix -4.60 4 base pairs.
Multi-loop 0.30External closing pair is C 222-G 1303
26 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.30External closing pair is T 234-A 1201
Stack -2.10External closing pair is A 235-T 1200
Stack -1.50External closing pair is G 236-C 1199
Stack -1.40External closing pair is G 237-T 1198
Stack -2.40External closing pair is T 238-A 1197
Stack -2.10External closing pair is C 239-G 1196
Stack -2.40External closing pair is T 240-A 1195
Helix -13.20 8 base pairs.
Interior loop 5.40External closing pair is C 241-G 1194
Stack -2.10External closing pair is T 243-A 1187
Stack -2.20External closing pair is G 244-C 1186
Stack -2.10External closing pair is T 245-A 1185
Helix -6.40 4 base pairs.
Bulge loop 3.30External closing pair is G 246-C 1184
Stack -2.40External closing pair is T 247-A 1181
Stack -2.10External closing pair is C 248-G 1180
Stack -2.10External closing pair is T 249-A 1179
Stack -2.40External closing pair is G 250-C 1178
Helix -9.00 5 base pairs.
Bulge loop 4.50External closing pair is A 251-T 1177
Stack -3.30External closing pair is G 257-C 1176
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 258-C 1175
Stack -2.10External closing pair is A 260-T 1173
Stack -2.20External closing pair is G 261-C 1172
Stack -0.90External closing pair is T 262-A 1171
Helix -5.20 4 base pairs.
Multi-loop 1.70External closing pair is T 263-A 1170
25 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 298-G 1165
Stack -2.10External closing pair is C 299-G 1164
Stack -0.90External closing pair is T 300-A 1163
Helix -6.30 4 base pairs.
Interior loop 2.50External closing pair is T 301-A 1162
Stack -1.30External closing pair is T 307-A 1156
Helix -1.30 2 base pairs.
Interior loop 1.20External closing pair is A 308-T 1155
Stack -1.30External closing pair is T 310-A 1153
Stack -1.10External closing pair is A 311-T 1152
Stack -1.30External closing pair is T 312-A 1151
Stack -0.60External closing pair is T 313-G 1150
Stack -2.10External closing pair is T 314-A 1149
Stack -2.50External closing pair is G 315-C 1148
Helix -8.90 7 base pairs.
Multi-loop 3.70External closing pair is T 316-G 1147
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 334-T 1143
Stack -2.20External closing pair is G 335-C 1142
Helix -4.30 3 base pairs.
Interior loop 1.90External closing pair is T 336-A 1141
Stack -3.30External closing pair is G 339-C 1138
Stack -2.40External closing pair is G 340-C 1137
Stack -2.20External closing pair is A 341-T 1136
Stack -2.10External closing pair is C 342-G 1135
Stack -0.90External closing pair is A 343-T 1134
Stack -1.40External closing pair is A 344-T 1133
Stack -0.60External closing pair is T 345-G 1132
Stack -2.40External closing pair is T 346-A 1131
Helix -15.30 9 base pairs.
Interior loop 0.70External closing pair is C 347-G 1130
Stack -2.10External closing pair is C 353-G 1125
Stack -1.30External closing pair is T 354-A 1124
Stack -0.60External closing pair is T 355-G 1123
Helix -4.00 4 base pairs.
Multi-loop 1.70External closing pair is T 356-A 1122
5 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 317-G 326
Helix -2.10 2 base pairs.
Hairpin loop 4.90Closing pair is T 318-A 325
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 11
seq.txt
ΔG = -816.20

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.20External closing pair is T 384-G 2030
16 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 1329-C 2027
Stack -0.60External closing pair is T 1330-G 2026
Helix -3.10 3 base pairs.
Bulge loop 1.40External closing pair is T 1331-A 2025
Stack -3.30External closing pair is C 1333-G 2024
Stack -2.10External closing pair is C 1334-G 2023
Stack -0.90External closing pair is A 1335-T 2022
Stack -0.90External closing pair is A 1336-T 2021
Helix -7.20 5 base pairs.
Interior loop 4.60External closing pair is A 1337-T 2020
Stack -1.10External closing pair is A 1346-T 2013
Stack -1.30External closing pair is T 1347-A 2012
Stack -1.00External closing pair is T 1348-G 2011
Stack -1.10External closing pair is A 1349-T 2010
Stack -1.30External closing pair is T 1350-A 2009
Stack -0.90External closing pair is A 1351-T 2008
Helix -6.70 7 base pairs.
Multi-loop 3.90External closing pair is A 1352-T 2007
9 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.10External closing pair is A 1357-T 1970
Stack -0.90External closing pair is T 1358-A 1969
Stack -2.10External closing pair is T 1359-A 1968
Stack -3.30External closing pair is G 1360-C 1967
Stack -3.40External closing pair is G 1361-C 1966
Helix -10.80 6 base pairs.
Interior loop 1.10External closing pair is C 1362-G 1965
Stack -1.10External closing pair is A 1364-T 1963
Helix -1.10 2 base pairs.
Bulge loop 2.90External closing pair is T 1365-A 1962
Stack -2.40External closing pair is T 1367-A 1961
Stack -2.10External closing pair is C 1368-G 1960
Stack -2.10External closing pair is A 1369-T 1959
Stack -3.40External closing pair is G 1370-C 1958
Helix -10.00 5 base pairs.
Interior loop 4.90External closing pair is C 1371-G 1957
Stack -0.90External closing pair is A 1376-T 1947
Stack -2.10External closing pair is A 1377-T 1946
Stack -2.20External closing pair is G 1378-C 1945
Stack -2.10External closing pair is T 1379-A 1944
Helix -7.30 5 base pairs.
Bulge loop 1.30External closing pair is G 1380-C 1943
Stack -1.50External closing pair is T 1382-G 1942
Helix -1.50 2 base pairs.
Multi-loop 1.20External closing pair is C 1383-G 1941
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1412-G 1937
Stack -2.40External closing pair is T 1413-A 1936
Stack -3.30External closing pair is C 1414-G 1935
Helix -7.80 4 base pairs.
Bulge loop 3.30External closing pair is C 1415-G 1934
Stack -2.50External closing pair is G 1416-T 1931
Stack -2.10External closing pair is C 1417-G 1930
Stack -1.00External closing pair is T 1418-A 1929
Stack -1.30External closing pair is G 1419-T 1928
Stack -0.90External closing pair is A 1420-T 1927
Stack -0.90External closing pair is A 1421-T 1926
Helix -8.70 7 base pairs.
Multi-loop 3.60External closing pair is A 1422-T 1925
11 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1853-G 1919
Stack -2.40External closing pair is G 1854-C 1918
Helix -4.80 3 base pairs.
Interior loop 3.70External closing pair is A 1855-T 1917
Stack -2.10External closing pair is T 1860-A 1912
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -6.70 4 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.20External closing pair is A 1427-T 1850
Stack -3.30External closing pair is C 1428-G 1849
Helix -5.50 3 base pairs.
Bulge loop 1.70External closing pair is C 1429-G 1848
Stack -2.40External closing pair is T 1431-A 1847
Stack -2.10External closing pair is C 1432-G 1846
Stack -2.10External closing pair is A 1433-T 1845
Helix -6.60 4 base pairs.
Interior loop 3.70External closing pair is G 1434-C 1844
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.20External closing pair is G 385-C 1314
Helix -2.20 2 base pairs.
Interior loop -2.90External closing pair is T 386-A 1313
Interior loop 3.70External closing pair is A 389-T 1310
Stack -1.10External closing pair is A 392-T 1306
Stack -1.30External closing pair is T 393-A 1305
Stack -2.20External closing pair is A 394-T 1304
Stack -3.30External closing pair is C 395-G 1303
Helix -7.90 5 base pairs.
Multi-loop -0.60External closing pair is C 396-G 1302
17 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -2.90 3 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 12
seq.txt
ΔG = -815.90

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop 1.90External closing pair is C 114-G 1941
7 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 272-G 1934
Stack -1.30External closing pair is T 273-A 1933
Stack -0.90External closing pair is A 274-T 1932
Helix -4.30 4 base pairs.
Interior loop 3.10External closing pair is A 275-T 1931
Stack -1.30External closing pair is G 277-T 1928
Stack -0.90External closing pair is A 278-T 1927
Stack -0.60External closing pair is A 279-T 1926
Stack -2.50External closing pair is G 280-T 1925
Stack -3.30External closing pair is C 281-G 1924
Stack -2.40External closing pair is C 282-G 1923
Stack -3.40External closing pair is G 283-C 1922
Helix -14.40 8 base pairs.
Bulge loop 0.50External closing pair is C 284-G 1921
Stack -2.40External closing pair is C 285-G 1919
Stack -2.40External closing pair is G 286-C 1918
Helix -4.80 3 base pairs.
Multi-loop 3.90External closing pair is A 287-T 1917
27 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1860-A 1912
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -6.70 4 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -0.50External closing pair is T 301-G 1849
Stack -0.60External closing pair is T 302-G 1848
Stack -2.40External closing pair is T 303-A 1847
Stack -2.10External closing pair is C 304-G 1846
Helix -5.60 5 base pairs.
Interior loop 1.70External closing pair is A 305-T 1845
Stack -1.30External closing pair is T 307-A 1843
Stack -1.10External closing pair is A 308-T 1842
Stack -0.90External closing pair is T 309-A 1841
Stack -1.30External closing pair is T 310-A 1840
Stack -1.10External closing pair is A 311-T 1839
Stack -0.90External closing pair is T 312-A 1838
Stack -1.30External closing pair is T 313-A 1837
Stack 0.30External closing pair is T 314-G 1836
Helix -7.60 9 base pairs.
Bulge loop 6.50External closing pair is G 315-T 1835
Stack -2.40External closing pair is T 316-A 1816
Stack -2.10External closing pair is C 317-G 1815
Helix -4.50 3 base pairs.
Bulge loop 1.40External closing pair is T 318-A 1814
Stack -3.30External closing pair is C 320-G 1813
Stack -2.10External closing pair is C 321-G 1812
Stack -1.10External closing pair is A 322-T 1811
Stack -1.30External closing pair is T 323-A 1810
Stack -0.90External closing pair is A 324-T 1809
Stack -2.10External closing pair is A 325-T 1808
Stack -2.20External closing pair is G 326-C 1807
Stack -0.90External closing pair is T 327-A 1806
Stack -1.30External closing pair is T 328-A 1805
Helix -15.20 10 base pairs.
Multi-loop 4.50External closing pair is T 329-G 1804
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is T 330-A 1762
Stack -2.10External closing pair is C 331-G 1761
Stack -0.90External closing pair is A 332-T 1760
Stack -0.90External closing pair is A 333-T 1759
Stack -2.10External closing pair is A 334-T 1758
Stack -2.50External closing pair is G 335-C 1757
Stack -1.00External closing pair is T 336-G 1756
Helix -11.90 8 base pairs.
Interior loop 1.70External closing pair is A 337-T 1755
Stack -2.10External closing pair is G 339-T 1753
Stack -2.40External closing pair is G 340-C 1752
Stack -2.20External closing pair is A 341-T 1751
Helix -6.70 4 base pairs.
Interior loop 1.40External closing pair is C 342-G 1750
Stack -1.10External closing pair is A 344-T 1747
Stack -0.90External closing pair is T 345-A 1746
Stack -2.40External closing pair is T 346-A 1745
Helix -4.40 4 base pairs.
Multi-loop 0.50External closing pair is C 347-G 1744
29 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 1116-A 1738
Stack -0.60External closing pair is T 1117-G 1737
Stack -2.10External closing pair is T 1118-A 1736
Stack -3.30External closing pair is G 1119-C 1735
Stack -2.40External closing pair is G 1120-C 1734
Helix -9.70 6 base pairs.
Multi-loop 1.40External closing pair is A 1121-T 1733
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1142-G 1729
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is T 1143-A 1728
Stack -2.10External closing pair is C 1145-G 1726
Stack -2.10External closing pair is A 1146-T 1725
Helix -4.20 3 base pairs.
Bulge loop 1.40External closing pair is G 1147-C 1724
Stack -2.10External closing pair is A 1149-T 1723
Stack -2.40External closing pair is G 1150-C 1722
Stack -1.10External closing pair is A 1151-T 1721
Stack -1.30External closing pair is T 1152-A 1720
Helix -6.90 5 base pairs.
Bulge loop 2.70External closing pair is A 1153-T 1719
Stack -0.90External closing pair is T 1154-A 1717
Stack -1.30External closing pair is T 1155-A 1716
Stack -1.10External closing pair is A 1156-T 1715
Stack -1.30External closing pair is T 1157-A 1714
Stack -1.10External closing pair is A 1158-T 1713
Helix -5.70 6 base pairs.
Multi-loop 1.00External closing pair is T 1159-A 1712
26 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1203-G 1707
Stack -2.50External closing pair is G 1204-C 1706
Stack -1.40External closing pair is T 1205-G 1705
Stack -3.30External closing pair is G 1206-C 1704
Helix -9.60 5 base pairs.
Bulge loop 3.70External closing pair is G 1207-C 1703
Stack -2.40External closing pair is T 1211-A 1702
Stack -2.10External closing pair is C 1212-G 1701
Stack -1.40External closing pair is A 1213-T 1700
Helix -5.90 4 base pairs.
Bulge loop 5.60External closing pair is T 1214-G 1699
Stack -2.40External closing pair is T 1215-A 1691
Stack -2.10External closing pair is C 1216-G 1690
Stack -1.00External closing pair is T 1217-A 1689
Stack -2.10External closing pair is G 1218-T 1688
Stack -3.30External closing pair is G 1219-C 1687
Helix -10.90 6 base pairs.
Multi-loop 2.10External closing pair is G 1220-C 1686
4 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1271-G 1684
Stack -2.10External closing pair is A 1272-T 1683
Stack -2.40External closing pair is G 1273-C 1682
Helix -6.60 4 base pairs.
Multi-loop 2.30External closing pair is A 1274-T 1681
23 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is A 1277-T 1287
Stack -2.50External closing pair is G 1278-C 1286
Helix -4.60 3 base pairs.
Hairpin loop 4.80Closing pair is T 1279-G 1285
Stack -0.90External closing pair is A 1222-T 1268
Stack -0.90External closing pair is A 1223-T 1267
Stack -0.60External closing pair is A 1224-T 1266
Stack -2.50External closing pair is G 1225-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -8.10 7 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.10External closing pair is C 353-G 423
Stack -0.90External closing pair is T 354-A 422
Stack -0.90External closing pair is T 355-A 421
Stack -2.10External closing pair is T 356-A 420
Helix -6.00 5 base pairs.
Bulge loop 0.40External closing pair is G 357-C 419
Bulge loop 0.50External closing pair is C 358-G 417
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.40External closing pair is G 115-C 270
Stack -2.10External closing pair is C 116-G 269
Stack -2.10External closing pair is T 117-A 268
Helix -7.60 4 base pairs.
Interior loop 1.60External closing pair is G 118-C 267
Stack -1.30External closing pair is T 121-A 264
Helix -1.30 2 base pairs.
Interior loop 1.00External closing pair is A 122-T 263
Stack -2.10External closing pair is C 124-G 261
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is T 125-A 260
Stack -2.40External closing pair is T 127-A 259
Stack -3.30External closing pair is C 128-G 258
Stack -1.40External closing pair is C 129-G 257
Stack -1.40External closing pair is G 130-T 256
Helix -8.50 5 base pairs.
Bulge loop 4.90External closing pair is T 131-A 255
Stack -2.40External closing pair is G 132-C 248
Stack -2.20External closing pair is A 133-T 247
Stack -2.10External closing pair is C 134-G 246
Stack -2.20External closing pair is A 135-T 245
Stack -2.10External closing pair is C 136-G 244
Helix -11.00 6 base pairs.
Interior loop 4.30External closing pair is A 137-T 243
Stack -2.20External closing pair is A 143-T 238
Stack -3.30External closing pair is C 144-G 237
Stack -2.10External closing pair is C 145-G 236
Helix -7.60 4 base pairs.
Multi-loop 2.60External closing pair is T 146-A 235
28 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 191-C 222
Stack -2.10External closing pair is C 192-G 221
Stack -1.10External closing pair is A 193-T 220
Helix -6.60 4 base pairs.
Interior loop 3.60External closing pair is T 194-A 219
Stack -1.40External closing pair is C 200-G 214
Stack -0.50External closing pair is G 201-T 213
Stack -1.30External closing pair is G 202-T 212
Stack -1.40External closing pair is A 203-T 211
Helix -4.60 5 base pairs.
Hairpin loop 4.90Closing pair is T 204-G 210
Stack -1.00External closing pair is T 154-A 181
Stack -2.10External closing pair is G 155-T 180
Stack -2.40External closing pair is G 156-C 179
Stack -0.90External closing pair is A 157-T 178
Helix -6.40 5 base pairs.
Bulge loop 3.20External closing pair is A 158-T 177
Stack -2.50External closing pair is G 159-T 175
Stack -2.10External closing pair is C 160-G 174
Stack -2.10External closing pair is T 161-A 173
Stack -1.50External closing pair is G 162-C 172
Helix -8.20 5 base pairs.
Hairpin loop 6.10Closing pair is G 163-T 171
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 13
seq.txt
ΔG = -815.60

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 3.30External closing pair is T 384-G 2030
9 ss bases & 4 closing helices.
Stack -0.60External closing pair is T 1887-G 2026
Stack -2.40External closing pair is T 1888-A 2025
Stack -3.30External closing pair is C 1889-G 2024
Helix -6.30 4 base pairs.
Interior loop 0.30External closing pair is C 1890-G 2023
Stack -0.60External closing pair is A 1893-T 2020
Stack -1.30External closing pair is G 1894-T 2019
Helix -1.90 3 base pairs.
Multi-loop 0.70External closing pair is A 1895-T 2018
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1921-C 2016
Stack -2.40External closing pair is C 1922-G 2015
Stack -1.50External closing pair is G 1923-C 2014
Stack -1.40External closing pair is G 1924-T 2013
Stack -1.30External closing pair is T 1925-A 2012
Helix -10.00 6 base pairs.
Interior loop 1.70External closing pair is T 1926-G 2011
Stack -1.30External closing pair is T 1928-A 2009
Stack -0.60External closing pair is A 1929-T 2008
Stack -1.40External closing pair is G 1930-T 2007
Stack -1.30External closing pair is T 1931-A 2006
Stack -1.00External closing pair is T 1932-G 2005
Helix -5.60 6 base pairs.
Interior loop 4.70External closing pair is A 1933-T 2004
Stack -2.40External closing pair is G 1937-C 1995
Stack -0.90External closing pair is A 1938-T 1994
Helix -3.30 3 base pairs.
Interior loop 1.10External closing pair is A 1939-T 1993
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.20External closing pair is G 385-C 1869
Stack -0.90External closing pair is T 386-A 1868
Stack -2.10External closing pair is T 387-A 1867
Stack -2.40External closing pair is G 388-C 1866
Stack -2.20External closing pair is A 389-T 1865
Helix -9.80 6 base pairs.
Multi-loop 1.10External closing pair is C 390-G 1864
27 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1352-T 1860
Stack -2.10External closing pair is A 1353-T 1859
Stack -2.40External closing pair is G 1354-C 1858
Stack -1.10External closing pair is A 1355-T 1857
Helix -6.50 5 base pairs.
Bulge loop 2.90External closing pair is T 1356-A 1856
Stack -1.30External closing pair is T 1358-A 1855
Stack -1.40External closing pair is T 1359-G 1854
Stack -1.50External closing pair is G 1360-C 1853
Helix -4.20 4 base pairs.
Bulge loop 2.50External closing pair is G 1361-T 1852
Stack -0.90External closing pair is A 1363-T 1851
Stack -1.40External closing pair is A 1364-T 1850
Stack -1.50External closing pair is T 1365-G 1849
Stack -2.10External closing pair is C 1366-G 1848
Stack -2.40External closing pair is T 1367-A 1847
Stack -2.10External closing pair is C 1368-G 1846
Helix -10.40 7 base pairs.
Multi-loop 1.40External closing pair is A 1369-T 1845
29 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.30External closing pair is G 398-C 1334
Stack -2.20External closing pair is G 399-C 1333
Stack -1.30External closing pair is T 400-A 1332
Helix -6.80 4 base pairs.
Interior loop 3.90External closing pair is A 401-T 1331
Stack -1.30External closing pair is T 407-A 1325
Stack -0.90External closing pair is A 408-T 1324
Stack -0.60External closing pair is A 409-T 1323
Stack -1.40External closing pair is G 410-T 1322
Helix -4.20 5 base pairs.
Interior loop 2.60External closing pair is T 411-A 1321
Stack -2.10External closing pair is A 414-T 1317
Stack -2.40External closing pair is G 415-C 1316
Stack -2.10External closing pair is A 416-T 1315
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 417-C 1314
Stack -2.10External closing pair is C 419-G 1312
Stack -0.90External closing pair is A 420-T 1311
Stack -0.90External closing pair is A 421-T 1310
Stack -0.60External closing pair is A 422-T 1309
Helix -4.50 5 base pairs.
Bulge loop 2.50External closing pair is G 423-T 1308
Stack -1.10External closing pair is A 424-T 1306
Stack -1.30External closing pair is T 425-A 1305
Stack -2.20External closing pair is A 426-T 1304
Stack -3.30External closing pair is C 427-G 1303
Helix -7.90 5 base pairs.
Multi-loop 2.00External closing pair is C 428-G 1302
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1116-A 1298
Stack -0.90External closing pair is T 1117-A 1297
Stack -1.00External closing pair is T 1118-A 1296
Stack -2.10External closing pair is G 1119-T 1295
Helix -4.90 5 base pairs.
Multi-loop -0.90External closing pair is G 1120-C 1294
31 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 14
seq.txt
ΔG = -815.20

Structural elementδGInformation
External loop -0.40 5 ss bases & 2 closing helices.
Stack -0.90External closing pair is A 1837-T 3134
Stack -1.10External closing pair is A 1838-T 3133
Stack -1.30External closing pair is T 1839-A 3132
Stack -0.90External closing pair is A 1840-T 3131
Stack -1.10External closing pair is A 1841-T 3130
Helix -5.30 6 base pairs.
Interior loop 1.10External closing pair is T 1842-A 3129
Stack -2.10External closing pair is C 1844-G 3127
Stack -2.10External closing pair is T 1845-A 3126
Stack -2.40External closing pair is G 1846-C 3125
Stack -2.10External closing pair is A 1847-T 3124
Stack -3.30External closing pair is G 1848-C 3123
Stack -2.20External closing pair is G 1849-C 3122
Stack -0.90External closing pair is T 1850-A 3121
Stack -0.90External closing pair is T 1851-A 3120
Helix -16.00 9 base pairs.
Multi-loop 4.60External closing pair is T 1852-A 3119
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1857-A 2665
Stack -2.10External closing pair is C 1858-G 2664
Stack -0.90External closing pair is T 1859-A 2663
Stack -2.10External closing pair is T 1860-A 2662
Helix -7.50 5 base pairs.
Multi-loop 1.40External closing pair is G 1861-C 2661
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.50External closing pair is G 1864-C 1943
Stack -1.50External closing pair is T 1865-G 1942
Helix -4.00 3 base pairs.
Multi-loop 0.30External closing pair is C 1866-G 1941
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1939
Stack -2.40External closing pair is T 1888-A 1938
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 1889-G 1937
Stack -2.10External closing pair is C 1890-G 1935
Stack -0.60External closing pair is T 1891-G 1934
Stack -1.30External closing pair is T 1892-A 1933
Stack -0.60External closing pair is A 1893-T 1932
Helix -4.60 5 base pairs.
Interior loop 0.50External closing pair is G 1894-T 1931
Stack -0.90External closing pair is A 1897-T 1928
Stack -0.90External closing pair is A 1898-T 1927
Stack -0.90External closing pair is A 1899-T 1926
Helix -2.70 4 base pairs.
Interior loop 1.60External closing pair is A 1900-T 1925
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -1.10External closing pair is A 1-T 1835
Stack -2.10External closing pair is T 2-A 1834
Helix -3.20 3 base pairs.
Bulge loop 1.60External closing pair is G 3-C 1833
Stack -2.40External closing pair is T 4-A 1831
Helix -2.40 2 base pairs.
Multi-loop -2.30External closing pair is C 5-G 1830
39 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1361-C 1523
Stack -2.10External closing pair is C 1362-G 1522
Stack -0.90External closing pair is A 1363-T 1521
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1364-T 1520
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.40External closing pair is G 21-C 1344
Stack -1.10External closing pair is A 22-T 1343
Stack -1.30External closing pair is T 23-A 1342
Stack -0.60External closing pair is A 24-T 1341
Helix -5.40 5 base pairs.
Interior loop 4.10External closing pair is G 25-T 1340
Stack -1.10External closing pair is A 29-T 1338
Stack -0.90External closing pair is T 30-A 1337
Stack -0.90External closing pair is T 31-A 1336
Stack -2.10External closing pair is T 32-A 1335
Stack -3.30External closing pair is G 33-C 1334
Stack -2.20External closing pair is G 34-C 1333
Stack -1.30External closing pair is T 35-A 1332
Stack -0.90External closing pair is A 36-T 1331
Helix -12.70 9 base pairs.
Multi-loop 1.30External closing pair is A 37-T 1330
37 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 85-C 1314
Stack -2.40External closing pair is T 86-A 1313
Stack -2.10External closing pair is C 87-G 1312
Helix -6.70 4 base pairs.
Interior loop 0.80External closing pair is A 88-T 1311
Stack -1.40External closing pair is G 91-T 1308
Helix -1.40 2 base pairs.
Bulge loop 2.90External closing pair is T 92-A 1307
Stack -1.00External closing pair is T 93-A 1305
Helix -1.00 2 base pairs.
Interior loop -1.60External closing pair is G 94-T 1304
Bulge loop 1.60External closing pair is G 97-C 1301
Stack -2.10External closing pair is T 99-A 1300
Stack -2.20External closing pair is G 100-C 1299
Stack -0.90External closing pair is T 101-A 1298
Stack -0.90External closing pair is T 102-A 1297
Helix -6.10 5 base pairs.
Bulge loop 3.80External closing pair is T 103-A 1296
Stack -1.30External closing pair is T 104-A 1293
Stack -1.10External closing pair is A 105-T 1292
Stack -0.90External closing pair is T 106-A 1291
Stack -2.10External closing pair is T 107-A 1290
Helix -5.40 5 base pairs.
Bulge loop 1.40External closing pair is G 108-C 1289
Stack -2.10External closing pair is A 109-T 1287
Stack -2.50External closing pair is G 110-C 1286
Helix -4.60 3 base pairs.
Interior loop 3.80External closing pair is T 111-G 1285
Stack -2.50External closing pair is G 118-T 1279
Stack -2.10External closing pair is C 119-G 1278
Stack -0.90External closing pair is T 120-A 1277
Stack -1.30External closing pair is T 121-A 1276
Stack -1.10External closing pair is A 122-T 1275
Stack -2.40External closing pair is T 123-A 1274
Stack -2.10External closing pair is C 124-G 1273
Helix -12.40 8 base pairs.
Bulge loop 4.10External closing pair is T 125-A 1272
Stack -2.20External closing pair is G 130-C 1271
Stack -2.10External closing pair is T 131-A 1270
Stack -2.40External closing pair is G 132-C 1269
Helix -6.70 4 base pairs.
Multi-loop 4.60External closing pair is A 133-T 1268
27 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 189-T 1267
Stack -0.60External closing pair is A 190-T 1266
Stack -2.50External closing pair is G 191-T 1265
Stack -2.10External closing pair is C 192-G 1264
Stack -1.10External closing pair is A 193-T 1263
Stack -1.30External closing pair is T 194-A 1262
Stack -0.90External closing pair is A 195-T 1261
Stack -0.90External closing pair is A 196-T 1260
Stack -2.10External closing pair is A 197-T 1259
Helix -12.40 10 base pairs.
Multi-loop 3.10External closing pair is G 198-C 1258
12 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1223-T 1248
Stack -2.10External closing pair is A 1224-T 1247
Stack -3.40External closing pair is G 1225-C 1246
Stack -2.10External closing pair is C 1226-G 1245
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 1227-T 1244
Stack -2.10External closing pair is A 1230-T 1241
Helix -2.10 2 base pairs.
Hairpin loop 4.10Closing pair is G 1231-C 1240
Stack -3.30External closing pair is C 199-G 1219
Stack -1.40External closing pair is C 200-G 1218
Stack -2.10External closing pair is G 201-T 1217
Stack -2.40External closing pair is G 202-C 1216
Helix -9.20 5 base pairs.
Multi-loop 1.20External closing pair is A 203-T 1215
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 277-C 1212
Helix -2.40 2 base pairs.
Bulge loop 2.90External closing pair is A 278-T 1211
Stack -2.10External closing pair is A 279-T 1209
Stack -3.40External closing pair is G 280-C 1208
Stack -3.30External closing pair is C 281-G 1207
Stack -1.40External closing pair is C 282-G 1206
Stack -2.50External closing pair is G 283-T 1205
Helix -12.70 6 base pairs.
Multi-loop 0.70External closing pair is C 284-G 1204
30 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is C 298-G 1165
Stack -2.10External closing pair is C 299-G 1164
Stack -0.90External closing pair is T 300-A 1163
Helix -6.30 4 base pairs.
Interior loop 2.50External closing pair is T 301-A 1162
Stack -1.30External closing pair is T 307-A 1156
Helix -1.30 2 base pairs.
Interior loop 1.20External closing pair is A 308-T 1155
Stack -1.30External closing pair is T 310-A 1153
Stack -1.10External closing pair is A 311-T 1152
Stack -1.30External closing pair is T 312-A 1151
Stack -0.60External closing pair is T 313-G 1150
Stack -2.10External closing pair is T 314-A 1149
Stack -2.50External closing pair is G 315-C 1148
Helix -8.90 7 base pairs.
Multi-loop 3.70External closing pair is T 316-G 1147
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 334-T 1143
Stack -2.20External closing pair is G 335-C 1142
Helix -4.30 3 base pairs.
Interior loop 1.90External closing pair is T 336-A 1141
Stack -3.30External closing pair is G 339-C 1138
Stack -2.40External closing pair is G 340-C 1137
Stack -2.20External closing pair is A 341-T 1136
Stack -2.10External closing pair is C 342-G 1135
Stack -0.90External closing pair is A 343-T 1134
Stack -1.40External closing pair is A 344-T 1133
Stack -0.60External closing pair is T 345-G 1132
Stack -2.40External closing pair is T 346-A 1131
Helix -15.30 9 base pairs.
Interior loop 0.70External closing pair is C 347-G 1130
Stack -2.10External closing pair is C 353-G 1125
Stack -1.30External closing pair is T 354-A 1124
Stack -0.60External closing pair is T 355-G 1123
Helix -4.00 4 base pairs.
Multi-loop 1.70External closing pair is T 356-A 1122
5 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 317-G 326
Helix -2.10 2 base pairs.
Hairpin loop 4.90Closing pair is T 318-A 325
Stack -2.40External closing pair is G 205-C 272
Stack -2.10External closing pair is A 206-T 271
Stack -2.50External closing pair is G 207-C 270
Stack -0.60External closing pair is T 208-G 269
Stack -2.10External closing pair is T 209-A 268
Helix -9.70 6 base pairs.
Interior loop 0.80External closing pair is G 210-C 267
Stack -1.00External closing pair is T 213-A 264
Stack -1.30External closing pair is G 214-T 263
Helix -2.30 3 base pairs.
Multi-loop 3.90External closing pair is A 215-T 262
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.20External closing pair is A 227-T 238
Stack -2.10External closing pair is C 228-G 237
Helix -4.30 3 base pairs.
Hairpin loop 4.90Closing pair is T 229-G 236
Stack -1.00External closing pair is T 154-A 181
Stack -2.10External closing pair is G 155-T 180
Stack -2.40External closing pair is G 156-C 179
Stack -0.90External closing pair is A 157-T 178
Helix -6.40 5 base pairs.
Bulge loop 3.20External closing pair is A 158-T 177
Stack -2.50External closing pair is G 159-T 175
Stack -2.10External closing pair is C 160-G 174
Stack -2.10External closing pair is T 161-A 173
Stack -1.50External closing pair is G 162-C 172
Helix -8.20 5 base pairs.
Hairpin loop 6.10Closing pair is G 163-T 171
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 15
seq.txt
ΔG = -815.20

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 4.80External closing pair is T 211-A 1912
24 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 247-A 1907
Stack -2.10External closing pair is C 248-G 1906
Stack -1.00External closing pair is T 249-A 1905
Stack -1.30External closing pair is G 250-T 1904
Stack -1.10External closing pair is A 251-T 1903
Helix -7.90 6 base pairs.
Multi-loop 1.10External closing pair is T 252-A 1902
12 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 1896
Stack -2.40External closing pair is T 271-A 1895
Stack -2.10External closing pair is C 272-G 1894
Stack -1.30External closing pair is T 273-A 1893
Stack -0.90External closing pair is A 274-T 1892
Helix -8.80 6 base pairs.
Interior loop 1.10External closing pair is A 275-T 1891
Stack -2.40External closing pair is G 277-C 1889
Stack -0.90External closing pair is A 278-T 1888
Helix -3.30 3 base pairs.
Multi-loop 1.10External closing pair is A 279-T 1887
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is C 285-G 1864
Stack -2.40External closing pair is G 286-C 1863
Stack -1.40External closing pair is A 287-T 1862
Stack -1.00External closing pair is T 288-G 1861
Helix -7.20 5 base pairs.
Interior loop 3.80External closing pair is A 289-T 1860
Stack -0.50External closing pair is T 301-G 1849
Stack -0.60External closing pair is T 302-G 1848
Stack -2.40External closing pair is T 303-A 1847
Stack -2.10External closing pair is C 304-G 1846
Helix -5.60 5 base pairs.
Interior loop 1.70External closing pair is A 305-T 1845
Stack -1.30External closing pair is T 307-A 1843
Stack -1.10External closing pair is A 308-T 1842
Stack -0.90External closing pair is T 309-A 1841
Stack -1.30External closing pair is T 310-A 1840
Stack -1.10External closing pair is A 311-T 1839
Stack -0.90External closing pair is T 312-A 1838
Stack -1.30External closing pair is T 313-A 1837
Stack 0.30External closing pair is T 314-G 1836
Helix -7.60 9 base pairs.
Bulge loop 6.50External closing pair is G 315-T 1835
Stack -2.40External closing pair is T 316-A 1816
Stack -2.10External closing pair is C 317-G 1815
Helix -4.50 3 base pairs.
Bulge loop 1.40External closing pair is T 318-A 1814
Stack -3.30External closing pair is C 320-G 1813
Stack -2.10External closing pair is C 321-G 1812
Stack -1.10External closing pair is A 322-T 1811
Stack -1.30External closing pair is T 323-A 1810
Stack -0.90External closing pair is A 324-T 1809
Stack -2.10External closing pair is A 325-T 1808
Stack -2.20External closing pair is G 326-C 1807
Helix -13.00 8 base pairs.
Multi-loop 2.20External closing pair is T 327-A 1806
16 ss bases & 4 closing helices.
Stack -3.30External closing pair is C 427-G 1804
Stack -2.10External closing pair is C 428-G 1803
Helix -5.40 3 base pairs.
Bulge loop 1.60External closing pair is A 429-T 1802
Stack -2.10External closing pair is C 431-G 1801
Stack -1.00External closing pair is T 432-A 1800
Stack -1.30External closing pair is G 433-T 1799
Stack -0.90External closing pair is A 434-T 1798
Helix -5.30 5 base pairs.
Multi-loop 3.60External closing pair is A 435-T 1797
9 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1117-A 1795
Stack -1.40External closing pair is T 1118-G 1794
Stack -1.50External closing pair is G 1119-C 1793
Helix -4.20 4 base pairs.
Interior loop 1.70External closing pair is G 1120-T 1792
Stack -0.60External closing pair is A 1122-T 1790
Stack -1.30External closing pair is G 1123-T 1789
Stack -2.10External closing pair is A 1124-T 1788
Stack -3.30External closing pair is G 1125-C 1787
Stack -2.40External closing pair is G 1126-C 1786
Stack -2.20External closing pair is A 1127-T 1785
Stack -2.40External closing pair is C 1128-G 1784
Stack -3.30External closing pair is G 1129-C 1783
Stack -2.40External closing pair is G 1130-C 1782
Helix -20.00 10 base pairs.
Multi-loop 1.90External closing pair is A 1131-T 1781
4 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1206-C 1778
Stack -3.40External closing pair is G 1207-C 1777
Stack -2.10External closing pair is C 1208-G 1776
Helix -8.80 4 base pairs.
Interior loop 3.30External closing pair is T 1209-A 1775
Stack -1.30External closing pair is T 1214-A 1772
Stack -1.50External closing pair is T 1215-G 1771
Stack -2.10External closing pair is C 1216-G 1770
Stack -2.10External closing pair is T 1217-A 1769
Stack -3.30External closing pair is G 1218-C 1768
Stack -3.30External closing pair is G 1219-C 1767
Stack -2.40External closing pair is G 1220-C 1766
Stack -0.90External closing pair is A 1221-T 1765
Helix -16.90 9 base pairs.
Multi-loop 2.10External closing pair is A 1222-T 1764
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1762
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 1752-G 1761
Stack -3.40External closing pair is G 1225-C 1749
Stack -2.10External closing pair is C 1226-G 1748
Stack -1.10External closing pair is A 1227-T 1747
Helix -6.60 4 base pairs.
Interior loop 0.60External closing pair is T 1228-A 1746
Stack -2.20External closing pair is G 1231-C 1743
Stack -0.90External closing pair is T 1232-A 1742
Stack -1.30External closing pair is T 1233-A 1741
Helix -4.40 4 base pairs.
Multi-loop 3.50External closing pair is A 1234-T 1740
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.40External closing pair is G 1238-T 1713
Stack -2.40External closing pair is T 1239-A 1712
Stack -2.10External closing pair is C 1240-G 1711
Stack -0.90External closing pair is T 1241-A 1710
Stack -0.90External closing pair is T 1242-A 1709
Stack -1.30External closing pair is T 1243-A 1708
Stack -1.40External closing pair is T 1244-G 1707
Stack -3.40External closing pair is G 1245-C 1706
Helix -13.80 9 base pairs.
Multi-loop 2.40External closing pair is C 1246-G 1705
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1292-G 1701
Stack -2.20External closing pair is A 1293-T 1700
Stack -2.10External closing pair is C 1294-G 1699
Helix -5.30 4 base pairs.
Multi-loop 1.80External closing pair is T 1295-A 1698
18 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.40External closing pair is T 1248-A 1274
Stack -2.10External closing pair is C 1249-G 1273
Stack -2.10External closing pair is T 1250-A 1272
Helix -6.60 4 base pairs.
Interior loop 3.40External closing pair is G 1251-C 1271
Stack -0.90External closing pair is A 1255-T 1266
Stack -2.20External closing pair is A 1256-T 1265
Helix -3.10 3 base pairs.
Hairpin loop 4.60Closing pair is C 1257-G 1264
Stack -2.20External closing pair is G 1132-C 1203
Stack -0.90External closing pair is T 1133-A 1202
Stack -1.00External closing pair is T 1134-A 1201
Helix -4.10 4 base pairs.
Multi-loop 3.10External closing pair is G 1135-T 1200
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1147-C 1175
Stack -2.10External closing pair is C 1148-G 1174
Stack -2.10External closing pair is A 1149-T 1173
Helix -7.60 4 base pairs.
Interior loop 3.00External closing pair is G 1150-C 1172
Stack -1.30External closing pair is T 1154-A 1169
Stack -1.00External closing pair is T 1155-G 1168
Stack -1.10External closing pair is A 1156-T 1167
Helix -3.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1157-A 1166
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 331-G 357
Stack -0.90External closing pair is A 332-T 356
Stack -0.90External closing pair is A 333-T 355
Stack -2.10External closing pair is A 334-T 354
Stack -2.20External closing pair is G 335-C 353
Helix -8.20 6 base pairs.
Interior loop 1.20External closing pair is T 336-A 352
Stack -2.40External closing pair is G 340-C 347
Helix -2.40 2 base pairs.
Hairpin loop 5.40Closing pair is A 341-T 346
Stack -2.40External closing pair is G 258-C 267
Helix -2.40 2 base pairs.
Hairpin loop 4.90Closing pair is A 259-T 266
Stack -1.00External closing pair is T 232-G 246
Stack -1.40External closing pair is A 233-T 245
Stack -1.00External closing pair is T 234-G 244
Stack -2.10External closing pair is A 235-T 243
Stack -3.30External closing pair is G 236-C 242
Helix -8.80 6 base pairs.
Hairpin loop 5.70Closing pair is G 237-C 241
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 16
seq.txt
ΔG = -814.90

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.90External closing pair is T 384-G 2030
7 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 525-C 1990
Stack -2.10External closing pair is C 526-G 1989
Stack -0.90External closing pair is A 527-T 1988
Stack -1.10External closing pair is A 528-T 1987
Stack -0.90External closing pair is T 529-A 1986
Stack -0.90External closing pair is T 530-A 1985
Stack -0.90External closing pair is T 531-A 1984
Helix -10.20 8 base pairs.
Multi-loop 2.80External closing pair is T 532-A 1983
8 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 1941-C 1980
Helix -3.30 2 base pairs.
Interior loop 3.00External closing pair is G 1942-C 1979
Stack -2.20External closing pair is A 1944-T 1976
Stack -2.10External closing pair is C 1945-G 1975
Helix -4.30 3 base pairs.
Interior loop 4.10External closing pair is T 1946-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Multi-loop 1.90External closing pair is G 611-T 1892
10 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1119-C 1890
Stack -2.40External closing pair is G 1120-C 1889
Stack -0.90External closing pair is A 1121-T 1888
Helix -6.60 4 base pairs.
Multi-loop 0.30External closing pair is A 1122-T 1887
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is G 1126-C 1866
Stack -2.20External closing pair is A 1127-T 1865
Stack -2.40External closing pair is C 1128-G 1864
Stack -1.50External closing pair is G 1129-C 1863
Helix -8.50 5 base pairs.
Multi-loop 2.10External closing pair is G 1130-T 1862
16 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 1163-T 1860
Stack -2.10External closing pair is G 1164-T 1859
Stack -2.40External closing pair is G 1165-C 1858
Stack -1.10External closing pair is A 1166-T 1857
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is T 1167-A 1856
Stack -2.50External closing pair is G 1174-T 1850
Stack -3.30External closing pair is C 1175-G 1849
Stack -2.10External closing pair is C 1176-G 1848
Stack -2.40External closing pair is T 1177-A 1847
Stack -2.10External closing pair is C 1178-G 1846
Stack -2.10External closing pair is A 1179-T 1845
Helix -14.50 7 base pairs.
Multi-loop 0.50External closing pair is G 1180-C 1844
23 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is G 1196-C 1437
Stack -1.10External closing pair is A 1197-T 1436
Stack -2.40External closing pair is T 1198-A 1435
Stack -2.10External closing pair is C 1199-G 1434
Helix -8.00 5 base pairs.
Multi-loop 0.10External closing pair is T 1200-A 1433
18 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1429
Stack -2.20External closing pair is G 1303-C 1428
Stack -1.30External closing pair is T 1304-A 1427
Stack -1.10External closing pair is A 1305-T 1426
Helix -7.90 5 base pairs.
Multi-loop 3.90External closing pair is T 1306-A 1425
27 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -1.40External closing pair is G 1329-T 1365
Stack -0.90External closing pair is T 1330-A 1364
Helix -2.30 3 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1363
Stack -3.30External closing pair is C 1333-G 1361
Stack -2.10External closing pair is C 1334-G 1360
Stack -0.90External closing pair is A 1335-T 1359
Helix -6.30 4 base pairs.
Bulge loop 4.60External closing pair is A 1336-T 1358
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.50External closing pair is G 1132-C 1148
Stack -0.60External closing pair is T 1133-G 1147
Stack -2.10External closing pair is T 1134-A 1146
Stack -2.20External closing pair is G 1135-C 1145
Helix -7.40 5 base pairs.
Hairpin loop 5.90Closing pair is T 1136-A 1144
Stack -2.10External closing pair is C 616-G 1113
Stack -2.10External closing pair is T 617-A 1112
Stack -2.20External closing pair is G 618-C 1111
Stack -1.30External closing pair is T 619-A 1110
Stack -0.60External closing pair is T 620-G 1109
Helix -8.30 6 base pairs.
Interior loop 1.70External closing pair is T 621-A 1108
Stack -1.10External closing pair is A 623-T 1106
Stack -2.10External closing pair is T 624-A 1105
Stack -2.40External closing pair is G 625-C 1104
Stack -2.20External closing pair is A 626-T 1103
Helix -7.80 5 base pairs.
Multi-loop -0.80External closing pair is C 627-G 1102
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 641-C 1097
Stack -1.10External closing pair is A 642-T 1096
Stack -2.40External closing pair is T 643-A 1095
Helix -5.90 4 base pairs.
Multi-loop 2.80External closing pair is C 644-G 1094
26 ss bases & 4 closing helices.
Stack -2.40External closing pair is T 714-A 1076
Helix -2.40 2 base pairs.
Bulge loop 0.50External closing pair is C 715-G 1075
Stack -2.10External closing pair is C 717-G 1074
Stack -2.10External closing pair is A 718-T 1073
Stack -2.50External closing pair is G 719-C 1072
Stack -0.60External closing pair is T 720-G 1071
Helix -7.30 5 base pairs.
Bulge loop 2.50External closing pair is T 721-A 1070
Stack -1.00External closing pair is T 722-G 1068
Stack -1.10External closing pair is A 723-T 1067
Stack -0.90External closing pair is T 724-A 1066
Stack -2.10External closing pair is T 725-A 1065
Stack -2.40External closing pair is G 726-C 1064
Helix -7.50 6 base pairs.
Interior loop 1.70External closing pair is A 727-T 1063
Stack -1.30External closing pair is G 729-T 1061
Stack -0.90External closing pair is A 730-T 1060
Stack -0.90External closing pair is A 731-T 1059
Helix -3.10 4 base pairs.
Interior loop 2.50External closing pair is A 732-T 1058
Stack -3.30External closing pair is G 735-C 1056
Stack -3.40External closing pair is G 736-C 1055
Helix -6.70 3 base pairs.
Multi-loop 1.60External closing pair is C 737-G 1054
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -1.30External closing pair is T 746-A 772
Stack -0.90External closing pair is A 747-T 771
Stack -0.60External closing pair is A 748-T 770
Stack -1.40External closing pair is G 749-T 769
Helix -4.20 5 base pairs.
Interior loop 3.70External closing pair is T 750-A 768
Stack -1.00External closing pair is T 752-A 765
Stack -2.10External closing pair is G 753-T 764
Stack -2.20External closing pair is G 754-C 763
Stack -2.40External closing pair is T 755-A 762
Helix -7.70 5 base pairs.
Hairpin loop 4.20Closing pair is C 756-G 761
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.10External closing pair is A 647-T 679
Stack -2.20External closing pair is G 648-C 678
Stack -0.90External closing pair is T 649-A 677
Stack -0.90External closing pair is T 650-A 676
Helix -6.10 5 base pairs.
Bulge loop 1.70External closing pair is T 651-A 675
Stack -1.50External closing pair is G 653-C 674
Helix -1.50 2 base pairs.
Interior loop 2.70External closing pair is G 654-T 673
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -2.40External closing pair is G 630-C 639
Helix -2.40 2 base pairs.
Hairpin loop 4.30Closing pair is A 631-T 638
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Interior loop -0.40External closing pair is T 387-A 523
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 17
seq.txt
ΔG = -814.90

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Bulge loop 5.20External closing pair is T 361-G 2222
Stack -3.30External closing pair is C 362-G 2213
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 363-G 2212
Stack -1.30External closing pair is T 365-A 2210
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 366-G 2209
Stack -2.10External closing pair is T 369-A 2206
Helix -2.10 2 base pairs.
Bulge loop 2.80External closing pair is G 370-C 2205
Stack -2.20External closing pair is G 373-C 2204
Stack -0.90External closing pair is T 374-A 2203
Stack -1.30External closing pair is T 375-A 2202
Helix -4.40 4 base pairs.
Interior loop 2.30External closing pair is A 376-T 2201
Stack -2.20External closing pair is A 380-T 2198
Stack -2.10External closing pair is C 381-G 2197
Stack -2.10External closing pair is A 382-T 2196
Helix -6.40 4 base pairs.
Bulge loop 1.60External closing pair is G 383-C 2195
Stack -2.10External closing pair is T 384-A 2193
Stack -2.20External closing pair is G 385-C 2192
Stack -0.90External closing pair is T 386-A 2191
Stack -2.10External closing pair is T 387-A 2190
Helix -7.30 5 base pairs.
Bulge loop 1.40External closing pair is G 388-C 2189
Stack -2.20External closing pair is A 389-T 2187
Stack -3.30External closing pair is C 390-G 2186
Stack -2.10External closing pair is C 391-G 2185
Helix -7.60 4 base pairs.
Bulge loop 2.40External closing pair is A 392-T 2184
Stack -1.00External closing pair is T 393-G 2182
Stack -2.20External closing pair is A 394-T 2181
Stack -3.30External closing pair is C 395-G 2180
Stack -2.10External closing pair is C 396-G 2179
Stack -2.10External closing pair is A 397-T 2178
Helix -10.70 6 base pairs.
Multi-loop 1.90External closing pair is G 398-C 2177
26 ss bases & 4 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.20External closing pair is G 410-C 2109
Stack -2.10External closing pair is T 411-A 2108
Stack -2.40External closing pair is G 412-C 2107
Helix -6.70 4 base pairs.
Interior loop 1.70External closing pair is A 413-T 2106
Stack -1.30External closing pair is G 415-T 2104
Stack -2.10External closing pair is A 416-T 2103
Helix -3.40 3 base pairs.
Multi-loop 4.20External closing pair is G 417-C 2102
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -3.30External closing pair is C 418-G 2078
Stack -2.10External closing pair is C 419-G 2077
Stack -0.90External closing pair is A 420-T 2076
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 421-T 2075
Stack -1.40External closing pair is A 424-T 2072
Stack -1.00External closing pair is T 425-G 2071
Stack -2.20External closing pair is A 426-T 2070
Stack -3.30External closing pair is C 427-G 2069
Stack -2.10External closing pair is C 428-G 2068
Stack -0.90External closing pair is A 429-T 2067
Stack -2.20External closing pair is A 430-T 2066
Stack -2.10External closing pair is C 431-G 2065
Stack -2.10External closing pair is T 432-A 2064
Helix -17.30 10 base pairs.
Multi-loop 3.10External closing pair is G 433-C 2063
14 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 2059
Stack -2.10External closing pair is T 1955-A 2058
Stack -3.30External closing pair is G 1956-C 2057
Stack -3.40External closing pair is G 1957-C 2056
Helix -9.70 5 base pairs.
Interior loop 2.30External closing pair is C 1958-G 2055
Stack -1.10External closing pair is A 1962-T 2052
Helix -1.10 2 base pairs.
Interior loop 1.10External closing pair is T 1963-A 2051
Stack -3.40External closing pair is G 1965-C 2049
Stack -3.30External closing pair is C 1966-G 2048
Helix -6.70 3 base pairs.
Multi-loop 2.60External closing pair is C 1967-G 2047
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2011-C 2046
Stack -1.10External closing pair is A 2012-T 2045
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 2013-A 2044
Stack -2.50External closing pair is G 2015-T 2042
Stack -1.40External closing pair is C 2016-G 2041
Stack -1.40External closing pair is G 2017-T 2040
Stack -0.90External closing pair is T 2018-A 2039
Stack -0.90External closing pair is T 2019-A 2038
Stack -0.90External closing pair is T 2020-A 2037
Stack -1.30External closing pair is T 2021-A 2036
Stack 0.30External closing pair is T 2022-G 2035
Helix -9.00 9 base pairs.
Interior loop -0.40External closing pair is G 2023-T 2034
Stack -2.10External closing pair is A 2025-T 2032
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 2026-C 2031
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.10External closing pair is A 438-T 1946
Stack -2.20External closing pair is G 439-C 1945
Stack -2.10External closing pair is T 440-A 1944
Stack -2.50External closing pair is G 441-C 1943
Stack -1.50External closing pair is T 442-G 1942
Stack -2.10External closing pair is C 443-G 1941
Helix -12.50 7 base pairs.
Multi-loop 4.10External closing pair is T 444-A 1940
4 ss bases & 4 closing helices.
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Bulge loop 6.50External closing pair is G 611-T 1892
Stack -0.90External closing pair is T 612-A 1874
Stack -1.00External closing pair is T 613-A 1873
Stack -2.50External closing pair is G 614-T 1872
Stack -3.30External closing pair is C 615-G 1871
Helix -7.70 5 base pairs.
Bulge loop 1.40External closing pair is C 616-G 1870
Stack -2.20External closing pair is G 618-C 1869
Stack -0.90External closing pair is T 619-A 1868
Helix -3.10 3 base pairs.
Interior loop 4.00External closing pair is T 620-A 1867
Stack -1.40External closing pair is A 623-T 1865
Stack -1.40External closing pair is T 624-G 1864
Stack -2.40External closing pair is G 625-C 1863
Stack -2.20External closing pair is A 626-T 1862
Stack -2.10External closing pair is C 627-G 1861
Helix -9.50 6 base pairs.
Multi-loop 4.10External closing pair is A 628-T 1860
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.30External closing pair is G 630-T 1789
Stack -2.10External closing pair is A 631-T 1788
Stack -3.30External closing pair is G 632-C 1787
Stack -2.40External closing pair is G 633-C 1786
Helix -9.10 5 base pairs.
Bulge loop 4.10External closing pair is A 634-T 1785
Stack -2.40External closing pair is C 639-G 1784
Stack -3.30External closing pair is G 640-C 1783
Stack -2.40External closing pair is G 641-C 1782
Stack -1.10External closing pair is A 642-T 1781
Helix -9.20 5 base pairs.
Interior loop 3.10External closing pair is T 643-A 1780
Stack -2.20External closing pair is G 648-C 1773
Stack -1.30External closing pair is T 649-A 1772
Stack -0.50External closing pair is T 650-G 1771
Stack -0.60External closing pair is T 651-G 1770
Stack -2.10External closing pair is T 652-A 1769
Stack -3.30External closing pair is G 653-C 1768
Helix -10.00 7 base pairs.
Multi-loop 4.00External closing pair is G 654-C 1767
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 676-T 1765
Stack -2.20External closing pair is A 677-T 1764
Stack -2.10External closing pair is C 678-G 1763
Stack -2.40External closing pair is T 679-A 1762
Helix -7.60 5 base pairs.
Interior loop 2.70External closing pair is C 680-G 1761
Stack -3.40External closing pair is G 682-C 1757
Stack -2.10External closing pair is C 683-G 1756
Stack -1.10External closing pair is A 684-T 1755
Helix -6.60 4 base pairs.
Bulge loop 3.80External closing pair is T 685-A 1754
Stack -2.50External closing pair is G 686-T 1751
Stack -2.40External closing pair is C 687-G 1750
Stack -3.40External closing pair is G 688-C 1749
Stack -2.10External closing pair is C 689-G 1748
Stack -1.10External closing pair is A 690-T 1747
Helix -11.50 6 base pairs.
Multi-loop 4.10External closing pair is T 691-A 1746
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.30External closing pair is T 692-A 1716
Stack -1.10External closing pair is A 693-T 1715
Stack -1.30External closing pair is T 694-A 1714
Stack -1.10External closing pair is A 695-T 1713
Stack -1.30External closing pair is T 696-A 1712
Stack -0.60External closing pair is T 697-G 1711
Helix -6.70 7 base pairs.
Interior loop 1.70External closing pair is T 698-A 1710
Stack -2.40External closing pair is T 700-A 1708
Stack -2.40External closing pair is C 701-G 1707
Stack -3.40External closing pair is G 702-C 1706
Helix -8.20 4 base pairs.
Interior loop 0.40External closing pair is C 703-G 1705
Stack -2.20External closing pair is G 705-C 1703
Helix -2.20 2 base pairs.
Bulge loop 1.40External closing pair is T 706-A 1702
Stack -2.10External closing pair is C 708-G 1701
Stack -2.20External closing pair is A 709-T 1700
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 710-G 1699
14 ss bases & 5 closing helices.
Stack -2.40External closing pair is G 1648-C 1696
Stack -2.10External closing pair is A 1649-T 1695
Stack -2.20External closing pair is G 1650-C 1694
Stack -0.90External closing pair is T 1651-A 1693
Stack -0.90External closing pair is T 1652-A 1692
Stack -1.30External closing pair is T 1653-A 1691
Helix -9.80 7 base pairs.
Bulge loop 4.50External closing pair is T 1654-G 1690
Stack -2.10External closing pair is C 1655-G 1684
Stack -2.10External closing pair is A 1656-T 1683
Stack -2.40External closing pair is G 1657-C 1682
Stack -0.90External closing pair is A 1658-T 1681
Helix -7.50 5 base pairs.
Bulge loop 4.10External closing pair is A 1659-T 1680
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1071-C 1630
Stack -2.10External closing pair is C 1072-G 1629
Stack -2.10External closing pair is T 1073-A 1628
Stack -1.50External closing pair is G 1074-C 1627
Stack -1.30External closing pair is G 1075-T 1626
Helix -10.40 6 base pairs.
Bulge loop 4.20External closing pair is A 1076-T 1625
Stack -1.00External closing pair is T 1080-G 1624
Stack -0.90External closing pair is A 1081-T 1623
Stack -2.20External closing pair is A 1082-T 1622
Stack -2.10External closing pair is C 1083-G 1621
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is A 1084-T 1620
Stack -2.40External closing pair is T 1089-A 1616
Stack -2.10External closing pair is C 1090-G 1615
Helix -4.50 3 base pairs.
Interior loop 0.80External closing pair is A 1091-T 1614
Stack -2.40External closing pair is G 1094-C 1611
Stack -1.10External closing pair is A 1095-T 1610
Stack -2.40External closing pair is T 1096-A 1609
Helix -5.90 4 base pairs.
Multi-loop 0.50External closing pair is C 1097-G 1608
23 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1117-A 1593
Stack -2.10External closing pair is T 1118-A 1592
Stack -3.30External closing pair is G 1119-C 1591
Stack -2.40External closing pair is G 1120-C 1590
Stack -0.90External closing pair is A 1121-T 1589
Stack -2.10External closing pair is A 1122-T 1588
Helix -11.70 7 base pairs.
Multi-loop 0.50External closing pair is G 1123-C 1587
17 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -0.90External closing pair is T 720-A 1070
Stack -1.30External closing pair is T 721-A 1069
Stack -1.00External closing pair is T 722-G 1068
Stack -1.10External closing pair is A 723-T 1067
Stack -0.90External closing pair is T 724-A 1066
Stack -2.10External closing pair is T 725-A 1065
Stack -2.40External closing pair is G 726-C 1064
Helix -9.70 8 base pairs.
Interior loop 1.70External closing pair is A 727-T 1063
Stack -1.30External closing pair is G 729-T 1061
Stack -0.90External closing pair is A 730-T 1060
Stack -0.90External closing pair is A 731-T 1059
Helix -3.10 4 base pairs.
Interior loop 2.50External closing pair is A 732-T 1058
Stack -3.30External closing pair is G 735-C 1056
Stack -3.40External closing pair is G 736-C 1055
Helix -6.70 3 base pairs.
Multi-loop 1.60External closing pair is C 737-G 1054
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -1.30External closing pair is T 746-A 772
Stack -0.90External closing pair is A 747-T 771
Stack -0.60External closing pair is A 748-T 770
Stack -1.40External closing pair is G 749-T 769
Helix -4.20 5 base pairs.
Interior loop 3.70External closing pair is T 750-A 768
Stack -1.00External closing pair is T 752-A 765
Stack -2.10External closing pair is G 753-T 764
Stack -2.20External closing pair is G 754-C 763
Stack -2.40External closing pair is T 755-A 762
Helix -7.70 5 base pairs.
Hairpin loop 4.20Closing pair is C 756-G 761
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -2.40External closing pair is G 445-C 533
Stack -0.90External closing pair is A 446-T 532
Stack -0.90External closing pair is A 447-T 531
Stack -0.90External closing pair is A 448-T 530
Helix -5.10 5 base pairs.
Multi-loop 2.50External closing pair is A 449-T 529
14 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 18
seq.txt
ΔG = -813.90

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Helix -12.50 8 base pairs.
Multi-loop 2.20External closing pair is G 210-C 1913
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1784-C 1911
Stack -2.40External closing pair is T 1785-A 1910
Stack -3.30External closing pair is C 1786-G 1909
Stack -2.10External closing pair is C 1787-G 1908
Stack -1.30External closing pair is T 1788-A 1907
Stack -0.60External closing pair is T 1789-G 1906
Stack -1.30External closing pair is T 1790-A 1905
Helix -13.20 8 base pairs.
Multi-loop 2.60External closing pair is A 1791-T 1904
37 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.10External closing pair is A 233-T 1781
Stack -1.30External closing pair is T 234-A 1780
Stack -2.10External closing pair is A 235-T 1779
Stack -3.30External closing pair is G 236-C 1778
Helix -7.80 5 base pairs.
Bulge loop 1.60External closing pair is G 237-C 1777
Stack -2.40External closing pair is T 238-A 1775
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 239-G 1774
Stack -2.40External closing pair is T 240-A 1772
Stack -3.30External closing pair is C 241-G 1771
Stack -2.10External closing pair is C 242-G 1770
Stack -2.10External closing pair is T 243-A 1769
Helix -9.90 5 base pairs.
Multi-loop 4.40External closing pair is G 244-C 1768
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.40External closing pair is T 247-A 1658
Stack -2.10External closing pair is C 248-G 1657
Stack -2.10External closing pair is T 249-A 1656
Stack -2.40External closing pair is G 250-C 1655
Helix -9.00 5 base pairs.
Interior loop 2.70External closing pair is A 251-T 1654
Stack -2.20External closing pair is A 253-T 1651
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 254-G 1650
23 ss bases & 4 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.10External closing pair is T 256-A 1592
Stack -3.30External closing pair is G 257-C 1591
Stack -2.40External closing pair is G 258-C 1590
Stack -0.90External closing pair is A 259-T 1589
Stack -2.10External closing pair is A 260-T 1588
Stack -2.20External closing pair is G 261-C 1587
Stack -0.90External closing pair is T 262-A 1586
Helix -13.90 8 base pairs.
Multi-loop 1.50External closing pair is T 263-A 1585
12 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 3.60External closing pair is T 292-A 1353
60 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Helix -5.50 4 base pairs.
Bulge loop 2.80External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1243
Stack -0.60External closing pair is A 338-T 1242
Stack -2.10External closing pair is G 339-T 1241
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -8.20 6 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 2.80External closing pair is A 371-T 1211
13 ss bases & 3 closing helices.
Bulge loop 0.40External closing pair is G 1002-C 1208
Stack -2.10External closing pair is C 1004-G 1207
Stack -1.00External closing pair is T 1005-G 1206
Stack -2.20External closing pair is A 1006-T 1205
Helix -5.30 4 base pairs.
Multi-loop 1.50External closing pair is C 1007-G 1204
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1014-C 1175
Helix -3.40 2 base pairs.
Bulge loop 1.70External closing pair is C 1015-G 1174
Stack -2.10External closing pair is A 1017-T 1173
Stack -2.20External closing pair is G 1018-C 1172
Stack -0.90External closing pair is T 1019-A 1171
Stack -0.90External closing pair is T 1020-A 1170
Stack -1.30External closing pair is T 1021-A 1169
Helix -7.40 6 base pairs.
Interior loop 1.60External closing pair is T 1022-G 1168
Stack -2.10External closing pair is C 1026-G 1164
Stack -0.90External closing pair is T 1027-A 1163
Stack -1.00External closing pair is T 1028-A 1162
Helix -4.00 4 base pairs.
Interior loop 4.80External closing pair is G 1029-T 1161
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is T 379-A 997
Stack -2.20External closing pair is A 380-T 996
Stack -2.10External closing pair is C 381-G 995
Stack -2.10External closing pair is A 382-T 994
Helix -7.70 5 base pairs.
Interior loop 2.00External closing pair is G 383-C 993
Stack -1.40External closing pair is G 385-T 990
Stack -0.90External closing pair is T 386-A 989
Stack -2.10External closing pair is T 387-A 988
Stack -2.40External closing pair is G 388-C 987
Stack -2.20External closing pair is A 389-T 986
Stack -3.30External closing pair is C 390-G 985
Stack -2.10External closing pair is C 391-G 984
Helix -14.40 8 base pairs.
Interior loop 2.00External closing pair is A 392-T 983
Stack -3.30External closing pair is C 395-G 980
Helix -3.30 2 base pairs.
Multi-loop 0.10External closing pair is C 396-G 979
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 433-C 976
Stack -0.90External closing pair is A 434-T 975
Helix -3.30 3 base pairs.
Interior loop 4.10External closing pair is A 435-T 974
Stack -1.40External closing pair is G 439-T 972
Stack -2.10External closing pair is T 440-A 971
Stack -2.20External closing pair is G 441-C 970
Stack -2.40External closing pair is T 442-A 969
Stack -2.10External closing pair is C 443-G 968
Helix -10.20 6 base pairs.
Multi-loop 1.70External closing pair is T 444-A 967
8 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 498-C 965
Stack -2.10External closing pair is C 499-G 964
Stack -1.10External closing pair is A 500-T 963
Stack -1.30External closing pair is T 501-A 962
Stack -0.90External closing pair is A 502-T 961
Helix -8.80 6 base pairs.
Multi-loop 4.40External closing pair is A 503-T 960
5 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 524-T 957
Stack -3.40External closing pair is G 525-C 956
Stack -2.10External closing pair is C 526-G 955
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 527-T 954
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 573-G 953
Stack -1.10External closing pair is A 574-T 952
Stack -2.40External closing pair is T 575-A 951
Stack -3.30External closing pair is C 576-G 950
Helix -8.90 5 base pairs.
Multi-loop 1.10External closing pair is C 577-G 949
18 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 582-A 871
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -15.30 8 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -9.20 6 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -3.30External closing pair is G 398-C 419
Stack -2.50External closing pair is G 399-C 418
Helix -5.80 3 base pairs.
Interior loop 1.10External closing pair is T 400-G 417
Stack -2.10External closing pair is C 402-G 415
Stack -0.90External closing pair is T 403-A 414
Helix -3.00 3 base pairs.
Hairpin loop 5.00Closing pair is T 404-A 413
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 19
seq.txt
ΔG = -813.80

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.40External closing pair is T 384-G 2030
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1694-G 2026
Stack -2.40External closing pair is T 1695-A 2025
Stack -3.30External closing pair is C 1696-G 2024
Stack -2.10External closing pair is C 1697-G 2023
Stack -0.60External closing pair is A 1698-T 2022
Helix -10.50 6 base pairs.
Interior loop 1.70External closing pair is G 1699-T 2021
Stack -1.30External closing pair is G 1701-T 2019
Stack -2.20External closing pair is A 1702-T 2018
Helix -3.50 3 base pairs.
Bulge loop 1.40External closing pair is C 1703-G 2017
Stack -3.40External closing pair is G 1705-C 2016
Stack -2.40External closing pair is C 1706-G 2015
Stack -2.40External closing pair is G 1707-C 2014
Helix -8.20 4 base pairs.
Interior loop 4.70External closing pair is A 1708-T 2013
Stack -1.00External closing pair is T 1713-G 2011
Stack -1.10External closing pair is A 1714-T 2010
Stack -1.30External closing pair is T 1715-A 2009
Stack -0.90External closing pair is A 1716-T 2008
Stack -1.10External closing pair is A 1717-T 2007
Stack -1.30External closing pair is T 1718-A 2006
Stack -1.00External closing pair is T 1719-G 2005
Stack -1.10External closing pair is A 1720-T 2004
Helix -8.80 9 base pairs.
Interior loop 4.70External closing pair is T 1721-A 2003
Stack -2.40External closing pair is T 1723-A 1998
Stack -2.10External closing pair is C 1724-G 1997
Stack -2.10External closing pair is T 1725-A 1996
Stack -2.40External closing pair is G 1726-C 1995
Stack -0.90External closing pair is A 1727-T 1994
Stack -2.10External closing pair is A 1728-T 1993
Helix -12.00 7 base pairs.
Multi-loop 2.70External closing pair is G 1729-C 1992
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 1733-A 1936
Stack -3.30External closing pair is C 1734-G 1935
Helix -5.70 3 base pairs.
Multi-loop 2.20External closing pair is C 1735-G 1934
19 ss bases & 3 closing helices.
Stack -1.40External closing pair is T 1755-G 1923
Stack -3.40External closing pair is G 1756-C 1922
Helix -4.80 3 base pairs.
Interior loop 2.00External closing pair is C 1757-G 1921
Stack -1.40External closing pair is T 1760-G 1919
Stack -2.40External closing pair is G 1761-C 1918
Stack -2.10External closing pair is A 1762-T 1917
Stack -2.20External closing pair is G 1763-C 1916
Stack -0.90External closing pair is T 1764-A 1915
Helix -9.00 6 base pairs.
Multi-loop 4.70External closing pair is T 1765-A 1914
11 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 1860-A 1912
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -6.70 4 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.20External closing pair is A 1742-T 1751
Stack -2.40External closing pair is C 1743-G 1750
Helix -4.60 3 base pairs.
Hairpin loop 4.30Closing pair is G 1744-C 1749
Stack -3.30External closing pair is C 395-G 1685
Stack -2.10External closing pair is C 396-G 1684
Stack -2.10External closing pair is A 397-T 1683
Stack -1.50External closing pair is G 398-C 1682
Helix -9.00 5 base pairs.
Multi-loop 3.20External closing pair is G 399-T 1681
30 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.20External closing pair is A 401-T 1279
Stack -2.10External closing pair is C 402-G 1278
Stack -0.90External closing pair is T 403-A 1277
Stack -1.30External closing pair is T 404-A 1276
Stack -1.10External closing pair is A 405-T 1275
Stack -1.30External closing pair is T 406-A 1274
Helix -8.90 7 base pairs.
Interior loop 3.20External closing pair is T 407-G 1273
Stack -2.20External closing pair is G 410-C 1271
Stack -2.10External closing pair is T 411-A 1270
Stack -2.40External closing pair is G 412-C 1269
Stack -0.90External closing pair is A 413-T 1268
Helix -7.60 5 base pairs.
Bulge loop 6.50External closing pair is A 414-T 1267
Stack -1.30External closing pair is G 415-T 1248
Stack -2.10External closing pair is A 416-T 1247
Stack -3.40External closing pair is G 417-C 1246
Helix -6.80 4 base pairs.
Interior loop 1.10External closing pair is C 418-G 1245
Stack -0.90External closing pair is A 420-T 1243
Stack -0.90External closing pair is A 421-T 1242
Stack -2.10External closing pair is A 422-T 1241
Stack -2.40External closing pair is G 423-C 1240
Stack -1.40External closing pair is A 424-T 1239
Helix -7.70 6 base pairs.
Interior loop 3.00External closing pair is T 425-G 1238
Stack -0.90External closing pair is A 429-T 1233
Stack -2.20External closing pair is A 430-T 1232
Stack -2.10External closing pair is C 431-G 1231
Stack -2.10External closing pair is T 432-A 1230
Stack -2.40External closing pair is G 433-C 1229
Helix -9.70 6 base pairs.
Multi-loop 4.20External closing pair is A 434-T 1228
12 ss bases & 4 closing helices.
Stack -2.40External closing pair is T 1136-A 1221
Stack -3.30External closing pair is C 1137-G 1220
Stack -3.30External closing pair is C 1138-G 1219
Stack -2.10External closing pair is C 1139-G 1218
Helix -11.10 5 base pairs.
Interior loop 6.20External closing pair is A 1140-T 1217
Stack -2.10External closing pair is C 1142-G 1207
Stack -1.00External closing pair is T 1143-G 1206
Stack -2.20External closing pair is A 1144-T 1205
Helix -5.30 4 base pairs.
Multi-loop 1.50External closing pair is C 1145-G 1204
8 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1147-C 1175
Stack -2.10External closing pair is C 1148-G 1174
Stack -2.10External closing pair is A 1149-T 1173
Helix -7.60 4 base pairs.
Interior loop 3.00External closing pair is G 1150-C 1172
Stack -1.30External closing pair is T 1154-A 1169
Stack -1.00External closing pair is T 1155-G 1168
Stack -1.10External closing pair is A 1156-T 1167
Helix -3.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1157-A 1166
Stack -1.30External closing pair is G 1113-T 1134
Stack -2.20External closing pair is A 1114-T 1133
Stack -2.10External closing pair is C 1115-G 1132
Stack -1.30External closing pair is T 1116-A 1131
Stack -0.50External closing pair is T 1117-G 1130
Stack -1.40External closing pair is T 1118-G 1129
Helix -8.80 7 base pairs.
Hairpin loop 3.20Closing pair is G 1119-C 1128
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 20
seq.txt
ΔG = -813.80

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 3.40External closing pair is T 92-G 2680
5 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1589-A 2676
Stack -3.30External closing pair is C 1590-G 2675
Stack -2.10External closing pair is C 1591-G 2674
Stack -0.90External closing pair is A 1592-T 2673
Stack -2.20External closing pair is A 1593-T 2672
Stack -3.30External closing pair is C 1594-G 2671
Stack -2.10External closing pair is C 1595-G 2670
Helix -16.30 8 base pairs.
Multi-loop 3.60External closing pair is A 1596-T 2669
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1624-C 2667
Stack -0.90External closing pair is T 1625-A 2666
Stack -2.40External closing pair is T 1626-A 2665
Helix -5.50 4 base pairs.
Multi-loop 2.60External closing pair is C 1627-G 2664
18 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1629-T 1668
Helix -2.50 2 base pairs.
Multi-loop 1.20External closing pair is C 1630-G 1667
6 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1648-C 1663
Stack -2.10External closing pair is A 1649-T 1662
Stack -2.20External closing pair is G 1650-C 1661
Stack -0.90External closing pair is T 1651-A 1660
Stack -0.90External closing pair is T 1652-A 1659
Helix -8.50 6 base pairs.
Hairpin loop 5.10Closing pair is T 1653-A 1658
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.20External closing pair is G 94-C 1587
Stack -0.90External closing pair is T 95-A 1586
Helix -3.10 3 base pairs.
Multi-loop 2.30External closing pair is T 96-A 1585
4 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 237-C 1581
Helix -2.20 2 base pairs.
Interior loop 1.70External closing pair is T 238-A 1580
Stack -2.40External closing pair is T 240-A 1578
Stack -3.30External closing pair is C 241-G 1577
Stack -2.10External closing pair is C 242-G 1576
Stack -2.10External closing pair is T 243-A 1575
Stack -2.20External closing pair is G 244-C 1574
Stack -2.10External closing pair is T 245-A 1573
Helix -14.20 7 base pairs.
Multi-loop 1.10External closing pair is G 246-C 1572
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1554-C 1570
Stack -0.90External closing pair is A 1555-T 1569
Stack -1.10External closing pair is A 1556-T 1568
Helix -4.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1557-A 1567
Stack -2.40External closing pair is G 250-C 1545
Stack -1.40External closing pair is A 251-T 1544
Stack -1.00External closing pair is T 252-G 1543
Helix -4.80 4 base pairs.
Interior loop 4.10External closing pair is A 253-T 1542
Stack -1.10External closing pair is A 255-T 1538
Stack -2.10External closing pair is T 256-A 1537
Stack -3.30External closing pair is G 257-C 1536
Stack -2.40External closing pair is G 258-C 1535
Stack -0.90External closing pair is A 259-T 1534
Stack -0.60External closing pair is A 260-T 1533
Stack -1.40External closing pair is G 261-T 1532
Helix -11.80 8 base pairs.
Bulge loop 2.50External closing pair is T 262-A 1531
Stack -2.20External closing pair is A 264-T 1530
Stack -2.10External closing pair is C 265-G 1529
Helix -4.30 3 base pairs.
Bulge loop 2.50External closing pair is T 266-A 1528
Stack -0.60External closing pair is A 268-T 1527
Stack -2.50External closing pair is G 269-T 1526
Stack -2.10External closing pair is C 270-G 1525
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is T 271-A 1524
Stack -1.00External closing pair is T 273-G 1522
Stack -0.90External closing pair is A 274-T 1521
Stack -0.90External closing pair is A 275-T 1520
Helix -2.80 4 base pairs.
Multi-loop 0.40External closing pair is A 276-T 1519
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -2.10External closing pair is C 98-G 236
Stack -1.00External closing pair is T 99-A 235
Stack -1.40External closing pair is G 100-T 234
Helix -4.50 4 base pairs.
Interior loop 1.60External closing pair is T 101-A 233
Stack -1.30External closing pair is T 104-A 230
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 105-T 229
Stack -2.10External closing pair is T 107-A 227
Helix -2.10 2 base pairs.
Interior loop 0.40External closing pair is G 108-C 226
Stack -2.20External closing pair is G 110-C 224
Stack -2.10External closing pair is T 111-A 223
Stack -3.40External closing pair is G 112-C 222
Helix -7.70 4 base pairs.
Multi-loop 2.00External closing pair is C 113-G 221
17 ss bases & 3 closing helices.
Stack -1.30External closing pair is G 163-T 209
Stack -2.20External closing pair is A 164-T 208
Stack -2.10External closing pair is C 165-G 207
Stack -2.40External closing pair is T 166-A 206
Helix -8.00 5 base pairs.
Multi-loop 2.50External closing pair is C 167-G 205
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 191-C 199
Helix -3.40 2 base pairs.
Hairpin loop 4.10Closing pair is C 192-G 198
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 21
seq.txt
ΔG = -813.50

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 1.90External closing pair is G 67-C 2934
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 629-A 2930
Stack -2.40External closing pair is G 630-C 2929
Stack -2.10External closing pair is A 631-T 2928
Stack -3.30External closing pair is G 632-C 2927
Stack -2.40External closing pair is G 633-C 2926
Helix -12.30 6 base pairs.
Multi-loop -0.80External closing pair is A 634-T 2925
16 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 641-C 2730
Stack -1.40External closing pair is A 642-T 2729
Stack -1.50External closing pair is T 643-G 2728
Stack -2.10External closing pair is C 644-G 2727
Stack -0.90External closing pair is A 645-T 2726
Stack -0.90External closing pair is A 646-T 2725
Helix -9.20 7 base pairs.
Multi-loop 3.30External closing pair is A 647-T 2724
8 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 680-G 2719
Stack -2.10External closing pair is T 681-A 2718
Stack -3.40External closing pair is G 682-C 2717
Helix -7.60 4 base pairs.
Interior loop 1.10External closing pair is C 683-G 2716
Stack -2.10External closing pair is T 685-A 2714
Stack -3.40External closing pair is G 686-C 2713
Stack -2.40External closing pair is C 687-G 2712
Stack -3.40External closing pair is G 688-C 2711
Helix -11.30 5 base pairs.
Multi-loop 1.70External closing pair is C 689-G 2710
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.30External closing pair is T 692-A 1160
Stack -1.10External closing pair is A 693-T 1159
Stack -1.30External closing pair is T 694-A 1158
Stack -1.10External closing pair is A 695-T 1157
Helix -4.80 5 base pairs.
Interior loop 2.70External closing pair is T 696-A 1156
Stack -1.30External closing pair is T 698-A 1153
Stack -1.10External closing pair is A 699-T 1152
Stack -2.40External closing pair is T 700-A 1151
Helix -4.80 4 base pairs.
Bulge loop 1.40External closing pair is C 701-G 1150
Stack -3.40External closing pair is G 702-C 1148
Stack -2.10External closing pair is C 703-G 1147
Stack -2.10External closing pair is T 704-A 1146
Stack -2.20External closing pair is G 705-C 1145
Stack -1.30External closing pair is T 706-A 1144
Helix -11.10 6 base pairs.
Interior loop 6.10External closing pair is A 707-T 1143
Stack -2.20External closing pair is A 709-T 1136
Stack -2.10External closing pair is C 710-G 1135
Stack -0.90External closing pair is A 711-T 1134
Stack -2.20External closing pair is A 712-T 1133
Stack -2.10External closing pair is C 713-G 1132
Stack -2.40External closing pair is T 714-A 1131
Helix -11.90 7 base pairs.
Interior loop 2.50External closing pair is C 715-G 1130
Stack -1.30External closing pair is T 720-A 1124
Stack -0.60External closing pair is T 721-G 1123
Helix -1.90 3 base pairs.
Interior loop 1.70External closing pair is T 722-A 1122
Interior loop -2.90External closing pair is T 724-G 1120
Stack -0.90External closing pair is A 727-T 1117
Stack -2.10External closing pair is A 728-T 1116
Helix -3.00 3 base pairs.
Multi-loop -0.60External closing pair is G 729-C 1115
32 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -3.30External closing pair is C 733-G 1075
Stack -1.40External closing pair is C 734-G 1074
Stack -2.10External closing pair is G 735-T 1073
Stack -3.40External closing pair is G 736-C 1072
Stack -2.10External closing pair is C 737-G 1071
Stack -0.90External closing pair is T 738-A 1070
Stack -2.40External closing pair is T 739-A 1069
Helix -15.60 8 base pairs.
Interior loop 1.10External closing pair is C 740-G 1068
Stack -0.90External closing pair is T 742-A 1066
Helix -0.90 2 base pairs.
Interior loop 1.70External closing pair is T 743-A 1065
Stack -1.30External closing pair is T 746-A 1062
Stack -0.90External closing pair is A 747-T 1061
Stack -0.60External closing pair is A 748-T 1060
Helix -2.80 4 base pairs.
Interior loop 2.70External closing pair is G 749-T 1059
Stack -2.10External closing pair is T 752-A 1057
Stack -3.30External closing pair is G 753-C 1056
Stack -2.50External closing pair is G 754-C 1055
Helix -7.90 4 base pairs.
Multi-loop 3.00External closing pair is T 755-G 1054
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -2.10External closing pair is T 759-A 768
Stack -3.30External closing pair is G 760-C 767
Helix -5.40 3 base pairs.
Hairpin loop 4.50Closing pair is G 761-C 766
Stack -0.90External closing pair is T 650-A 677
Stack -0.90External closing pair is T 651-A 676
Stack -2.10External closing pair is T 652-A 675
Stack -1.50External closing pair is G 653-C 674
Helix -5.40 5 base pairs.
Interior loop 2.70External closing pair is G 654-T 673
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -2.20External closing pair is G 85-C 627
Stack -2.40External closing pair is T 86-A 626
Stack -2.10External closing pair is C 87-G 625
Stack -1.10External closing pair is A 88-T 624
Stack -0.90External closing pair is T 89-A 623
Stack -1.00External closing pair is T 90-A 622
Helix -9.70 7 base pairs.
Multi-loop 3.80External closing pair is G 91-T 621
48 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -1.00External closing pair is T 96-A 176
Stack -2.50External closing pair is G 97-T 175
Stack -2.10External closing pair is C 98-G 174
Stack -2.10External closing pair is T 99-A 173
Helix -7.70 5 base pairs.
Interior loop 2.70External closing pair is G 100-C 172
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 22
seq.txt
ΔG = -813.30

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Interior loop 3.30External closing pair is G 67-C 2934
Stack -2.40External closing pair is G 69-C 2929
Stack -2.10External closing pair is A 70-T 2928
Helix -4.50 3 base pairs.
Interior loop 3.00External closing pair is G 71-C 2927
Stack -3.30External closing pair is C 76-G 2924
Stack -2.10External closing pair is C 77-G 2923
Helix -5.40 3 base pairs.
Interior loop 3.00External closing pair is A 78-T 2922
Stack -2.20External closing pair is A 83-T 2918
Stack -2.40External closing pair is C 84-G 2917
Stack -2.50External closing pair is G 85-C 2916
Stack -1.50External closing pair is T 86-G 2915
Helix -8.60 5 base pairs.
Multi-loop 2.60External closing pair is C 87-G 2914
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 883-C 2913
Stack -2.10External closing pair is A 884-T 2912
Stack -1.50External closing pair is G 885-C 2911
Helix -6.00 4 base pairs.
Interior loop 5.20External closing pair is G 886-T 2910
Stack -2.40External closing pair is T 894-A 2906
Stack -2.10External closing pair is C 895-G 2905
Stack -0.90External closing pair is A 896-T 2904
Stack -2.10External closing pair is A 897-T 2903
Helix -7.50 5 base pairs.
Interior loop 1.20External closing pair is G 898-C 2902
Stack -3.30External closing pair is G 901-C 2898
Stack -2.50External closing pair is G 902-C 2897
Stack -1.40External closing pair is T 903-G 2896
Stack -3.40External closing pair is G 904-C 2895
Stack -3.30External closing pair is C 905-G 2894
Stack -2.10External closing pair is C 906-G 2893
Helix -16.00 7 base pairs.
Interior loop 3.00External closing pair is T 907-G 2892
Stack -2.40External closing pair is T 914-A 2885
Stack -3.30External closing pair is C 915-G 2884
Stack -1.40External closing pair is C 916-G 2883
Helix -7.10 4 base pairs.
Interior loop 1.70External closing pair is G 917-T 2882
Stack -1.30External closing pair is G 919-T 2880
Stack -2.20External closing pair is A 920-T 2879
Helix -3.50 3 base pairs.
Multi-loop 1.40External closing pair is C 921-G 2878
6 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 2827-T 2874
Stack -1.50External closing pair is T 2828-G 2873
Stack -2.10External closing pair is C 2829-G 2872
Stack -1.50External closing pair is T 2830-G 2871
Stack -2.10External closing pair is C 2831-G 2870
Stack -1.40External closing pair is T 2832-G 2869
Stack -2.50External closing pair is G 2833-C 2868
Stack -0.50External closing pair is T 2834-G 2867
Helix -13.00 9 base pairs.
Interior loop 3.60External closing pair is T 2835-G 2866
Stack -1.00External closing pair is T 2840-A 2860
Stack -2.50External closing pair is G 2841-T 2859
Stack -3.30External closing pair is C 2842-G 2858
Stack -2.10External closing pair is C 2843-G 2857
Helix -8.90 5 base pairs.
Interior loop 1.00External closing pair is A 2844-T 2856
Stack -2.10External closing pair is C 2846-G 2854
Helix -2.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 2847-A 2853
Stack -2.10External closing pair is C 924-G 2825
Stack -0.90External closing pair is T 925-A 2824
Stack -1.30External closing pair is T 926-A 2823
Helix -4.30 4 base pairs.
Interior loop 0.60External closing pair is A 927-T 2822
Stack -1.30External closing pair is T 930-A 2819
Stack -1.00External closing pair is T 931-G 2818
Stack -1.40External closing pair is A 932-T 2817
Helix -3.70 4 base pairs.
Bulge loop 2.80External closing pair is T 933-G 2816
Stack -1.10External closing pair is A 934-T 2814
Stack -1.30External closing pair is T 935-A 2813
Stack -1.00External closing pair is T 936-G 2812
Stack -0.60External closing pair is A 937-T 2811
Stack -2.50External closing pair is G 938-T 2810
Stack -2.10External closing pair is C 939-G 2809
Helix -8.60 7 base pairs.
Bulge loop 1.40External closing pair is T 940-A 2808
Stack -3.30External closing pair is C 941-G 2806
Stack -2.10External closing pair is C 942-G 2805
Stack -0.90External closing pair is T 943-A 2804
Stack -2.40External closing pair is T 944-A 2803
Stack -2.10External closing pair is C 945-G 2802
Stack -1.10External closing pair is A 946-T 2801
Helix -11.90 7 base pairs.
Interior loop -2.90External closing pair is T 947-A 2800
Stack -1.30External closing pair is G 950-T 2797
Helix -1.30 2 base pairs.
Bulge loop 3.80External closing pair is A 951-T 2796
Stack -1.00External closing pair is T 952-A 2793
Stack -1.40External closing pair is G 953-T 2792
Stack -1.00External closing pair is T 954-A 2791
Stack -2.50External closing pair is G 955-T 2790
Helix -5.90 5 base pairs.
Multi-loop 2.90External closing pair is C 956-G 2789
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 1019-G 2780
Stack -0.90External closing pair is T 1020-A 2779
Stack -0.90External closing pair is T 1021-A 2778
Stack -2.40External closing pair is T 1022-A 2777
Stack -2.40External closing pair is C 1023-G 2776
Stack -2.40External closing pair is G 1024-C 2775
Stack -2.20External closing pair is A 1025-T 2774
Helix -11.80 8 base pairs.
Multi-loop 0.60External closing pair is C 1026-G 2773
27 ss bases & 4 closing helices.
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.10External closing pair is A 958-T 1013
Helix -1.10 2 base pairs.
Interior loop 1.10External closing pair is T 959-A 1012
Stack -1.10External closing pair is A 962-T 1009
Stack -2.10External closing pair is T 963-A 1008
Helix -3.20 3 base pairs.
Bulge loop 1.60External closing pair is G 964-C 1007
Stack -1.30External closing pair is T 966-A 1006
Stack -2.10External closing pair is A 967-T 1005
Stack -2.40External closing pair is G 968-C 1004
Stack -2.20External closing pair is A 969-T 1003
Stack -2.10External closing pair is C 970-G 1002
Helix -10.10 6 base pairs.
Interior loop 3.10External closing pair is A 971-T 1001
Stack -1.40External closing pair is C 978-G 995
Stack -2.10External closing pair is G 979-T 994
Stack -2.40External closing pair is G 980-C 993
Helix -5.90 4 base pairs.
Hairpin loop 5.40Closing pair is A 981-T 992
Stack -2.10External closing pair is T 90-A 874
Stack -2.20External closing pair is G 91-C 873
Stack -0.90External closing pair is T 92-A 872
Stack -2.10External closing pair is T 93-A 871
Helix -7.30 5 base pairs.
Bulge loop 1.60External closing pair is G 94-C 870
Stack -0.90External closing pair is T 95-A 868
Stack -1.00External closing pair is T 96-A 867
Stack -2.50External closing pair is G 97-T 866
Stack -2.10External closing pair is C 98-G 865
Stack -1.40External closing pair is T 99-G 864
Stack -2.20External closing pair is G 100-C 863
Stack -0.90External closing pair is T 101-A 862
Helix -11.00 8 base pairs.
Multi-loop 4.80External closing pair is T 102-A 861
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 1.90External closing pair is C 116-G 811
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -3.40External closing pair is G 118-C 796
Stack -2.10External closing pair is C 119-G 795
Stack -0.90External closing pair is T 120-A 794
Stack -1.30External closing pair is T 121-A 793
Helix -7.70 5 base pairs.
Multi-loop 3.90External closing pair is A 122-T 792
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -5.60 4 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -2.40External closing pair is T 127-A 762
Stack -3.30External closing pair is C 128-G 761
Helix -5.70 3 base pairs.
Bulge loop 2.40External closing pair is C 129-G 760
Stack -1.40External closing pair is G 130-T 758
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -8.10 5 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 23
seq.txt
ΔG = -813.20

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 1.10External closing pair is A 217-T 2392
38 ss bases & 4 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.20External closing pair is A 394-T 2262
Stack -3.30External closing pair is C 395-G 2261
Stack -2.10External closing pair is C 396-G 2260
Stack -2.10External closing pair is A 397-T 2259
Stack -1.50External closing pair is G 398-C 2258
Stack -1.40External closing pair is G 399-T 2257
Helix -12.60 7 base pairs.
Bulge loop 1.40External closing pair is T 400-A 2256
Stack -2.10External closing pair is C 402-G 2255
Stack -0.90External closing pair is T 403-A 2254
Stack -1.30External closing pair is T 404-A 2253
Stack -1.10External closing pair is A 405-T 2252
Stack -0.90External closing pair is T 406-A 2251
Stack -1.30External closing pair is T 407-A 2250
Stack -0.90External closing pair is A 408-T 2249
Helix -8.50 8 base pairs.
Bulge loop 1.70External closing pair is A 409-T 2248
Stack -2.20External closing pair is G 410-C 2246
Stack -1.00External closing pair is T 411-A 2245
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is G 412-T 2244
Stack -1.30External closing pair is G 415-T 2240
Stack -0.60External closing pair is A 416-T 2239
Stack -2.50External closing pair is G 417-T 2238
Helix -4.40 4 base pairs.
Multi-loop 1.90External closing pair is C 418-G 2237
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -6.70 4 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -1.10External closing pair is A 424-T 2216
Stack -1.30External closing pair is T 425-A 2215
Stack -2.20External closing pair is A 426-T 2214
Stack -3.30External closing pair is C 427-G 2213
Stack -2.10External closing pair is C 428-G 2212
Helix -10.00 6 base pairs.
Multi-loop 2.20External closing pair is A 429-T 2211
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1115-G 2209
Stack -0.90External closing pair is T 1116-A 2208
Stack -0.90External closing pair is T 1117-A 2207
Stack -2.10External closing pair is T 1118-A 2206
Stack -3.30External closing pair is G 1119-C 2205
Helix -9.30 6 base pairs.
Interior loop 1.90External closing pair is G 1120-C 2204
Stack -0.60External closing pair is A 1124-T 2201
Stack -0.50External closing pair is G 1125-T 2200
Stack -1.30External closing pair is G 1126-T 2199
Stack -2.20External closing pair is A 1127-T 2198
Stack -1.40External closing pair is C 1128-G 2197
Stack -2.10External closing pair is G 1129-T 2196
Helix -8.10 7 base pairs.
Interior loop 2.50External closing pair is G 1130-C 2195
Stack -2.20External closing pair is G 1132-C 2192
Stack -0.90External closing pair is T 1133-A 2191
Stack -2.10External closing pair is T 1134-A 2190
Helix -5.20 4 base pairs.
Interior loop -1.90External closing pair is G 1135-C 2189
Stack -3.30External closing pair is C 1138-G 2186
Stack -2.10External closing pair is C 1139-G 2185
Helix -5.40 3 base pairs.
Bulge loop 1.60External closing pair is A 1140-T 2184
Stack -2.10External closing pair is C 1142-G 2183
Stack -1.00External closing pair is T 1143-G 2182
Stack -2.20External closing pair is A 1144-T 2181
Helix -5.30 4 base pairs.
Multi-loop 1.10External closing pair is C 1145-G 2180
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1368-G 2179
Stack -2.10External closing pair is A 1369-T 2178
Stack -3.40External closing pair is G 1370-C 2177
Stack -2.10External closing pair is C 1371-G 2176
Helix -9.70 5 base pairs.
Multi-loop 3.90External closing pair is A 1372-T 2175
7 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.90External closing pair is A 1376-T 2138
Stack -0.60External closing pair is A 1377-T 2137
Helix -1.50 3 base pairs.
Interior loop -2.50External closing pair is G 1378-T 2136
Stack -1.40External closing pair is A 1381-T 2133
Stack -1.50External closing pair is T 1382-G 2132
Helix -2.90 3 base pairs.
Bulge loop 3.30External closing pair is C 1383-G 2131
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -3.30External closing pair is G 236-C 391
Stack -2.20External closing pair is G 237-C 390
Stack -2.40External closing pair is T 238-A 389
Helix -7.90 4 base pairs.
Interior loop 2.30External closing pair is C 239-G 388
Stack -2.10External closing pair is C 242-G 383
Stack -2.10External closing pair is T 243-A 382
Stack -2.20External closing pair is G 244-C 381
Stack -1.00External closing pair is T 245-A 380
Helix -7.40 5 base pairs.
Interior loop 1.40External closing pair is G 246-T 379
Stack -1.00External closing pair is T 249-A 376
Stack -1.30External closing pair is G 250-T 375
Helix -2.30 3 base pairs.
Multi-loop 2.10External closing pair is A 251-T 374
6 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -1.10External closing pair is A 255-T 323
Stack -2.10External closing pair is T 256-A 322
Stack -3.30External closing pair is G 257-C 321
Helix -6.50 4 base pairs.
Multi-loop 0.50External closing pair is G 258-C 320
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 286-C 317
Stack -1.40External closing pair is A 287-T 316
Stack -1.00External closing pair is T 288-G 315
Helix -4.80 4 base pairs.
Interior loop 0.60External closing pair is A 289-T 314
Stack -1.30External closing pair is T 292-A 311
Helix -1.30 2 base pairs.
Hairpin loop 5.90Closing pair is A 293-T 310
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 24
seq.txt
ΔG = -812.50

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Bulge loop 5.20External closing pair is T 361-G 2222
Stack -3.30External closing pair is C 362-G 2213
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 363-G 2212
Stack -1.30External closing pair is T 365-A 2210
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 366-G 2209
Stack -2.10External closing pair is T 369-A 2206
Helix -2.10 2 base pairs.
Bulge loop 2.80External closing pair is G 370-C 2205
Stack -2.20External closing pair is G 373-C 2204
Stack -0.90External closing pair is T 374-A 2203
Stack -1.30External closing pair is T 375-A 2202
Helix -4.40 4 base pairs.
Interior loop 2.30External closing pair is A 376-T 2201
Stack -2.20External closing pair is A 380-T 2198
Stack -2.10External closing pair is C 381-G 2197
Stack -2.10External closing pair is A 382-T 2196
Helix -6.40 4 base pairs.
Bulge loop 1.60External closing pair is G 383-C 2195
Stack -2.10External closing pair is T 384-A 2193
Stack -2.20External closing pair is G 385-C 2192
Stack -0.90External closing pair is T 386-A 2191
Stack -2.10External closing pair is T 387-A 2190
Helix -7.30 5 base pairs.
Bulge loop 1.40External closing pair is G 388-C 2189
Stack -2.20External closing pair is A 389-T 2187
Stack -3.30External closing pair is C 390-G 2186
Stack -2.10External closing pair is C 391-G 2185
Helix -7.60 4 base pairs.
Bulge loop 2.40External closing pair is A 392-T 2184
Stack -1.00External closing pair is T 393-G 2182
Stack -2.20External closing pair is A 394-T 2181
Stack -3.30External closing pair is C 395-G 2180
Stack -2.10External closing pair is C 396-G 2179
Stack -2.10External closing pair is A 397-T 2178
Helix -10.70 6 base pairs.
Multi-loop 1.90External closing pair is G 398-C 2177
26 ss bases & 4 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.20External closing pair is G 410-C 2109
Stack -2.10External closing pair is T 411-A 2108
Stack -2.40External closing pair is G 412-C 2107
Helix -6.70 4 base pairs.
Interior loop 1.70External closing pair is A 413-T 2106
Stack -1.30External closing pair is G 415-T 2104
Stack -2.10External closing pair is A 416-T 2103
Helix -3.40 3 base pairs.
Multi-loop 4.20External closing pair is G 417-C 2102
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -3.30External closing pair is C 418-G 2078
Stack -2.10External closing pair is C 419-G 2077
Stack -0.90External closing pair is A 420-T 2076
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 421-T 2075
Stack -1.40External closing pair is A 424-T 2072
Stack -1.00External closing pair is T 425-G 2071
Stack -2.20External closing pair is A 426-T 2070
Stack -3.30External closing pair is C 427-G 2069
Stack -2.10External closing pair is C 428-G 2068
Stack -0.90External closing pair is A 429-T 2067
Stack -2.20External closing pair is A 430-T 2066
Stack -2.10External closing pair is C 431-G 2065
Stack -2.10External closing pair is T 432-A 2064
Helix -17.30 10 base pairs.
Multi-loop 1.70External closing pair is G 433-C 2063
15 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.40External closing pair is G 2011-C 2046
Stack -1.10External closing pair is A 2012-T 2045
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 2013-A 2044
Stack -2.50External closing pair is G 2015-T 2042
Stack -1.40External closing pair is C 2016-G 2041
Stack -1.40External closing pair is G 2017-T 2040
Stack -0.90External closing pair is T 2018-A 2039
Stack -0.90External closing pair is T 2019-A 2038
Stack -0.90External closing pair is T 2020-A 2037
Stack -1.30External closing pair is T 2021-A 2036
Stack 0.30External closing pair is T 2022-G 2035
Helix -9.00 9 base pairs.
Interior loop -0.40External closing pair is G 2023-T 2034
Stack -2.10External closing pair is A 2025-T 2032
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 2026-C 2031
Stack -1.30External closing pair is T 437-A 2003
Stack -0.60External closing pair is A 438-T 2002
Stack -1.40External closing pair is G 439-T 2001
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 440-A 2000
Stack -2.40External closing pair is T 442-A 1998
Stack -2.10External closing pair is C 443-G 1997
Stack -2.10External closing pair is T 444-A 1996
Stack -2.40External closing pair is G 445-C 1995
Stack -0.90External closing pair is A 446-T 1994
Helix -9.90 6 base pairs.
Interior loop 3.40External closing pair is A 447-T 1993
Stack -3.30External closing pair is G 451-C 1991
Helix -3.30 2 base pairs.
Interior loop 3.10External closing pair is G 452-C 1990
Stack -1.40External closing pair is T 460-G 1981
Stack -3.30External closing pair is G 461-C 1980
Stack -2.40External closing pair is G 462-C 1979
Stack -0.60External closing pair is A 463-T 1978
Stack -1.30External closing pair is G 464-T 1977
Stack -1.40External closing pair is A 465-T 1976
Stack -0.60External closing pair is T 466-G 1975
Stack -1.00External closing pair is T 467-A 1974
Stack -1.30External closing pair is G 468-T 1973
Helix -13.30 10 base pairs.
Multi-loop 1.40External closing pair is A 469-T 1972
8 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 898-C 1949
Stack -0.90External closing pair is A 899-T 1948
Stack -0.60External closing pair is A 900-T 1947
Stack -2.10External closing pair is G 901-T 1946
Stack -2.20External closing pair is G 902-C 1945
Stack -2.10External closing pair is T 903-A 1944
Stack -3.40External closing pair is G 904-C 1943
Stack -3.30External closing pair is C 905-G 1942
Stack -2.10External closing pair is C 906-G 1941
Helix -19.10 10 base pairs.
Interior loop 4.20External closing pair is T 907-A 1940
Stack -2.40External closing pair is T 914-A 1936
Stack -3.30External closing pair is C 915-G 1935
Helix -5.70 3 base pairs.
Interior loop 1.40External closing pair is C 916-G 1934
Stack -1.30External closing pair is G 919-T 1932
Stack -2.20External closing pair is A 920-T 1931
Stack -2.10External closing pair is C 921-G 1930
Stack -1.30External closing pair is T 922-A 1929
Helix -6.90 5 base pairs.
Multi-loop 4.70External closing pair is A 923-T 1928
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 967-T 1927
Stack -1.30External closing pair is G 968-T 1926
Stack -2.20External closing pair is A 969-T 1925
Helix -4.10 4 base pairs.
Multi-loop 0.60External closing pair is C 970-G 1924
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1225-C 1922
Stack -2.10External closing pair is C 1226-G 1921
Stack -1.40External closing pair is A 1227-T 1920
Helix -6.90 4 base pairs.
Interior loop 1.70External closing pair is T 1228-G 1919
Stack -2.10External closing pair is A 1230-T 1917
Stack -2.20External closing pair is G 1231-C 1916
Stack -0.90External closing pair is T 1232-A 1915
Helix -5.20 4 base pairs.
Multi-loop 2.50External closing pair is T 1233-A 1914
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1257-G 1909
Stack -2.10External closing pair is C 1258-G 1908
Stack -1.30External closing pair is T 1259-A 1907
Stack -0.60External closing pair is T 1260-G 1906
Stack -1.30External closing pair is T 1261-A 1905
Helix -8.60 6 base pairs.
Interior loop 1.90External closing pair is A 1262-T 1904
Stack -0.90External closing pair is T 1265-A 1900
Stack -0.90External closing pair is T 1266-A 1899
Stack -0.90External closing pair is T 1267-A 1898
Stack -2.40External closing pair is T 1268-A 1897
Helix -5.10 5 base pairs.
Multi-loop -1.20External closing pair is C 1269-G 1896
24 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is G 1273-C 1863
Stack -1.40External closing pair is A 1274-T 1862
Stack -1.00External closing pair is T 1275-G 1861
Stack -0.90External closing pair is A 1276-T 1860
Stack -2.10External closing pair is A 1277-T 1859
Helix -7.80 6 base pairs.
Multi-loop 0.10External closing pair is G 1278-C 1858
31 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -7.40 5 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -0.90External closing pair is T 974-A 1222
Stack -2.40External closing pair is T 975-A 1221
Stack -3.30External closing pair is C 976-G 1220
Stack -3.30External closing pair is C 977-G 1219
Stack -1.40External closing pair is C 978-G 1218
Stack -2.10External closing pair is G 979-T 1217
Stack -2.40External closing pair is G 980-C 1216
Helix -15.80 8 base pairs.
Interior loop 4.70External closing pair is A 981-T 1215
Stack -1.00External closing pair is T 983-A 1210
Stack -2.10External closing pair is G 984-T 1209
Stack -2.50External closing pair is G 985-C 1208
Stack -1.50External closing pair is T 986-G 1207
Stack -2.10External closing pair is C 987-G 1206
Helix -9.20 6 base pairs.
Multi-loop 3.00External closing pair is A 988-T 1205
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -2.50External closing pair is G 995-C 1175
Stack -1.00External closing pair is T 996-G 1174
Helix -3.50 3 base pairs.
Bulge loop 2.70External closing pair is A 997-T 1173
Stack -0.90External closing pair is T 998-A 1171
Stack -0.90External closing pair is T 999-A 1170
Helix -1.80 3 base pairs.
Interior loop -2.50External closing pair is T 1000-A 1169
Stack -2.40External closing pair is T 1003-A 1166
Stack -2.10External closing pair is C 1004-G 1165
Helix -4.50 3 base pairs.
Multi-loop 2.60External closing pair is T 1005-G 1164
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -3.40External closing pair is G 1014-C 1030
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1015-G 1029
Stack -2.10External closing pair is A 1017-T 1027
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -5.60 4 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.40External closing pair is G 470-C 895
Stack -0.90External closing pair is A 471-T 894
Stack -0.90External closing pair is A 472-T 893
Stack -2.20External closing pair is A 473-T 892
Stack -2.10External closing pair is C 474-G 891
Helix -8.50 6 base pairs.
Interior loop 3.70External closing pair is A 475-T 890
Stack -2.10External closing pair is A 478-T 888
Stack -3.40External closing pair is G 479-C 887
Helix -5.50 3 base pairs.
Multi-loop 1.30External closing pair is C 480-G 886
29 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 582-A 871
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -15.30 8 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -3.30External closing pair is G 492-C 577
Stack -2.40External closing pair is G 493-C 576
Helix -5.70 3 base pairs.
Multi-loop 4.10External closing pair is A 494-T 575
14 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -2.10External closing pair is T 497-A 527
Stack -3.40External closing pair is G 498-C 526
Helix -5.50 3 base pairs.
Bulge loop 4.90External closing pair is C 499-G 525
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 25
seq.txt
ΔG = -812.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 0.70External closing pair is G 46-C 3102
15 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -3.30External closing pair is G 1485-C 2661
Stack -2.40External closing pair is G 1486-C 2660
Helix -5.70 3 base pairs.
Interior loop 3.40External closing pair is A 1487-T 2659
Stack -1.10External closing pair is A 1491-T 2655
Stack -0.90External closing pair is T 1492-A 2654
Stack -0.90External closing pair is T 1493-A 2653
Stack -1.30External closing pair is T 1494-A 2652
Helix -4.20 5 base pairs.
Bulge loop 3.80External closing pair is A 1495-T 2651
Stack -2.40External closing pair is T 1496-A 2648
Stack -2.10External closing pair is C 1497-G 2647
Stack -0.60External closing pair is A 1498-T 2646
Stack -2.50External closing pair is G 1499-T 2645
Helix -7.60 5 base pairs.
Multi-loop 2.10External closing pair is C 1500-G 2644
11 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -1.00External closing pair is T 1505-G 2617
Stack -2.20External closing pair is A 1506-T 2616
Stack -2.10External closing pair is C 1507-G 2615
Stack -0.90External closing pair is T 1508-A 2614
Stack -0.90External closing pair is T 1509-A 2613
Stack -0.90External closing pair is T 1510-A 2612
Stack -0.90External closing pair is T 1511-A 2611
Helix -8.90 8 base pairs.
Interior loop 2.70External closing pair is T 1512-A 2610
Stack -2.50External closing pair is G 1516-T 2606
Helix -2.50 2 base pairs.
Multi-loop 2.30External closing pair is C 1517-G 2605
5 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1569-A 2603
Stack -2.10External closing pair is C 1570-G 2602
Stack -2.20External closing pair is A 1571-T 2601
Helix -6.70 4 base pairs.
Bulge loop 0.50External closing pair is C 1572-G 2600
Stack -2.10External closing pair is C 1574-G 2599
Stack -2.10External closing pair is A 1575-T 2598
Stack -3.30External closing pair is G 1576-C 2597
Stack -2.40External closing pair is G 1577-C 2596
Helix -9.90 5 base pairs.
Multi-loop 4.70External closing pair is A 1578-T 2595
3 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -2.20External closing pair is A 1580-T 2136
Stack -2.10External closing pair is C 1581-G 2135
Helix -4.30 3 base pairs.
Interior loop 1.90External closing pair is A 1582-T 2134
Stack -2.10External closing pair is C 1587-G 2131
Stack -0.90External closing pair is T 1588-A 2130
Stack -2.40External closing pair is T 1589-A 2129
Stack -3.30External closing pair is C 1590-G 2128
Helix -8.70 5 base pairs.
Multi-loop 0.60External closing pair is C 1591-G 2127
12 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2040-A 2121
Stack -2.50External closing pair is G 2041-C 2120
Stack -1.50External closing pair is T 2042-G 2119
Stack -2.10External closing pair is C 2043-G 2118
Stack -1.10External closing pair is A 2044-T 2117
Helix -9.30 6 base pairs.
Interior loop 1.10External closing pair is T 2045-A 2116
Stack -3.30External closing pair is G 2047-C 2114
Helix -3.30 2 base pairs.
Multi-loop 2.80External closing pair is G 2048-C 2113
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -2.10External closing pair is C 1595-G 2035
Stack -2.20External closing pair is A 1596-T 2034
Helix -4.30 3 base pairs.
Multi-loop 2.60External closing pair is C 1597-G 2033
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1628-T 2032
Stack -3.40External closing pair is G 1629-C 2031
Stack -2.10External closing pair is C 1630-G 2030
Stack -0.90External closing pair is A 1631-T 2029
Helix -8.50 5 base pairs.
Multi-loop 3.30External closing pair is A 1632-T 2028
11 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -0.90External closing pair is T 1651-A 1985
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -5.10 5 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 50-C 1478
Stack -2.10External closing pair is C 51-G 1477
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is A 52-T 1476
Stack -2.10External closing pair is T 54-A 1474
Stack -3.40External closing pair is G 55-C 1473
Stack -2.10External closing pair is C 56-G 1472
Stack -1.30External closing pair is T 57-A 1471
Stack -0.60External closing pair is A 58-T 1470
Helix -9.50 6 base pairs.
Multi-loop 3.90External closing pair is G 59-T 1469
16 ss bases & 3 closing helices.
Stack -1.30External closing pair is G 1434-T 1465
Stack -1.10External closing pair is A 1435-T 1464
Stack -2.40External closing pair is T 1436-A 1463
Stack -1.40External closing pair is C 1437-G 1462
Stack -1.30External closing pair is G 1438-T 1461
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 1439-T 1460
Stack -2.40External closing pair is G 1441-C 1458
Stack -1.10External closing pair is A 1442-T 1457
Helix -3.50 3 base pairs.
Interior loop 1.60External closing pair is T 1443-A 1456
Hairpin loop 3.70Closing pair is G 1447-C 1453
Stack -0.90External closing pair is T 61-A 1421
Stack -1.30External closing pair is T 62-A 1420
Stack -1.00External closing pair is T 63-G 1419
Stack -2.10External closing pair is A 64-T 1418
Stack -2.50External closing pair is G 65-C 1417
Stack -1.40External closing pair is T 66-G 1416
Helix -9.20 7 base pairs.
Bulge loop 0.50External closing pair is G 67-C 1415
Stack -2.40External closing pair is G 69-C 1414
Stack -2.10External closing pair is A 70-T 1413
Helix -4.50 3 base pairs.
Multi-loop 3.20External closing pair is G 71-C 1412
24 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.40External closing pair is G 85-T 1382
Stack -2.40External closing pair is T 86-A 1381
Stack -2.10External closing pair is C 87-G 1380
Stack -1.40External closing pair is A 88-T 1379
Stack -0.60External closing pair is T 89-G 1378
Helix -7.90 6 base pairs.
Interior loop 2.60External closing pair is T 90-A 1377
Stack -1.40External closing pair is G 94-T 1374
Stack -0.90External closing pair is T 95-A 1373
Stack -2.10External closing pair is T 96-A 1372
Stack -3.40External closing pair is G 97-C 1371
Stack -2.10External closing pair is C 98-G 1370
Stack -2.10External closing pair is T 99-A 1369
Helix -12.00 7 base pairs.
Multi-loop 1.60External closing pair is G 100-C 1368
23 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 283-C 1362
Stack -3.30External closing pair is C 284-G 1361
Stack -1.40External closing pair is C 285-G 1360
Stack -1.30External closing pair is G 286-T 1359
Stack -1.10External closing pair is A 287-T 1358
Stack -1.30External closing pair is T 288-A 1357
Stack -1.10External closing pair is A 289-T 1356
Stack -1.30External closing pair is T 290-A 1355
Stack -0.60External closing pair is T 291-G 1354
Helix -14.80 10 base pairs.
Multi-loop 1.50External closing pair is T 292-A 1353
58 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -0.90External closing pair is T 309-A 1277
Stack -1.30External closing pair is T 310-A 1276
Stack -1.10External closing pair is A 311-T 1275
Stack -1.30External closing pair is T 312-A 1274
Stack -0.60External closing pair is T 313-G 1273
Stack -2.10External closing pair is T 314-A 1272
Stack -2.20External closing pair is G 315-C 1271
Helix -9.50 8 base pairs.
Interior loop 3.60External closing pair is T 316-A 1270
Stack -2.10External closing pair is C 321-G 1264
Stack -1.10External closing pair is A 322-T 1263
Stack -1.30External closing pair is T 323-A 1262
Stack -0.90External closing pair is A 324-T 1261
Helix -5.40 5 base pairs.
Bulge loop 3.30External closing pair is A 325-T 1260
Stack -2.20External closing pair is G 326-C 1257
Stack -0.90External closing pair is T 327-A 1256
Helix -3.10 3 base pairs.
Interior loop 3.20External closing pair is T 328-A 1255
Stack -2.40External closing pair is T 330-A 1252
Stack -2.10External closing pair is C 331-G 1251
Helix -4.50 3 base pairs.
Bulge loop 2.90External closing pair is A 332-T 1250
Stack -0.90External closing pair is A 333-T 1248
Stack -2.10External closing pair is A 334-T 1247
Stack -2.50External closing pair is G 335-C 1246
Stack -1.00External closing pair is T 336-G 1245
Stack -0.90External closing pair is A 337-T 1244
Stack -0.60External closing pair is A 338-T 1243
Helix -8.00 7 base pairs.
Bulge loop 1.70External closing pair is G 339-T 1242
Stack -2.40External closing pair is G 340-C 1240
Stack -2.20External closing pair is A 341-T 1239
Helix -4.60 3 base pairs.
Bulge loop 3.60External closing pair is C 342-G 1238
Stack -2.10External closing pair is C 347-G 1237
Stack -0.90External closing pair is A 348-T 1236
Helix -3.00 3 base pairs.
Interior loop -0.30External closing pair is A 349-T 1235
Stack -2.20External closing pair is A 352-T 1232
Stack -2.10External closing pair is C 353-G 1231
Helix -4.30 3 base pairs.
Interior loop 3.20External closing pair is T 354-A 1230
Stack -2.10External closing pair is T 356-A 1227
Stack -3.40External closing pair is G 357-C 1226
Helix -5.50 3 base pairs.
Interior loop 3.10External closing pair is C 358-G 1225
Stack -0.90External closing pair is T 360-A 1222
Stack -2.40External closing pair is T 361-A 1221
Stack -3.30External closing pair is C 362-G 1220
Stack -3.30External closing pair is C 363-G 1219
Helix -9.90 5 base pairs.
Interior loop 0.90External closing pair is C 364-G 1218
Stack -1.30External closing pair is G 367-T 1215
Stack -1.10External closing pair is A 368-T 1214
Stack -2.10External closing pair is T 369-A 1213
Stack -2.40External closing pair is G 370-C 1212
Helix -6.90 5 base pairs.
Multi-loop 1.70External closing pair is A 371-T 1211
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 390-G 1207
Stack -2.10External closing pair is C 391-G 1206
Stack -1.40External closing pair is A 392-T 1205
Helix -6.80 4 base pairs.
Interior loop 3.40External closing pair is T 393-G 1204
Stack -2.10External closing pair is A 397-T 1200
Stack -1.50External closing pair is G 398-C 1199
Stack -1.40External closing pair is G 399-T 1198
Helix -5.00 4 base pairs.
Bulge loop 1.40External closing pair is T 400-A 1197
Stack -2.10External closing pair is C 402-G 1196
Stack -1.30External closing pair is T 403-A 1195
Stack -1.00External closing pair is T 404-G 1194
Helix -4.40 4 base pairs.
Interior loop 0.80External closing pair is A 405-T 1193
Stack -0.90External closing pair is A 408-T 1190
Stack -0.60External closing pair is A 409-T 1189
Stack -1.40External closing pair is G 410-T 1188
Stack -2.10External closing pair is T 411-A 1187
Helix -5.00 5 base pairs.
Multi-loop -0.20External closing pair is G 412-C 1186
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 1178
Stack -2.10External closing pair is A 1124-T 1177
Stack -3.30External closing pair is G 1125-C 1176
Helix -7.80 4 base pairs.
Bulge loop 0.40External closing pair is G 1126-C 1175
Stack -1.40External closing pair is C 1128-G 1174
Stack -2.10External closing pair is G 1129-T 1173
Helix -3.50 3 base pairs.
Interior loop 0.90External closing pair is G 1130-C 1172
Interior loop -2.50External closing pair is T 1133-A 1169
Stack -2.40External closing pair is T 1136-A 1166
Stack -3.30External closing pair is C 1137-G 1165
Helix -5.70 3 base pairs.
Hairpin loop 6.50Closing pair is C 1138-G 1164
Stack -3.30External closing pair is C 418-G 1120
Stack -2.10External closing pair is C 419-G 1119
Stack -0.90External closing pair is A 420-T 1118
Stack -0.90External closing pair is A 421-T 1117
Stack -2.10External closing pair is A 422-T 1116
Helix -9.30 6 base pairs.
Multi-loop 1.50External closing pair is G 423-C 1115
9 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -11.20 6 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.20External closing pair is A 430-T 440
Stack -2.10External closing pair is C 431-G 439
Stack -1.00External closing pair is T 432-A 438
Helix -5.30 4 base pairs.
Hairpin loop 6.20Closing pair is G 433-T 437
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -0.60External closing pair is T 106-G 269
Stack -2.10External closing pair is T 107-A 268
Stack -2.40External closing pair is G 108-C 267
Stack -2.10External closing pair is A 109-T 266
Stack -2.20External closing pair is G 110-C 265
Stack -1.00External closing pair is T 111-A 264
Helix -10.40 7 base pairs.
Bulge loop 3.80External closing pair is G 112-T 263
Stack -2.50External closing pair is G 115-T 262
Stack -2.10External closing pair is C 116-G 261
Helix -4.60 3 base pairs.
Interior loop 2.10External closing pair is T 117-A 260
Stack -0.50External closing pair is T 120-G 258
Stack -1.00External closing pair is T 121-G 257
Stack -1.10External closing pair is A 122-T 256
Helix -2.60 4 base pairs.
Interior loop 1.70External closing pair is T 123-A 255
Stack -1.30External closing pair is T 125-A 253
Stack -1.10External closing pair is A 126-T 252
Stack -2.40External closing pair is T 127-A 251
Helix -4.80 4 base pairs.
Interior loop 2.70External closing pair is C 128-G 250
Stack -2.40External closing pair is G 132-C 248
Stack -2.20External closing pair is A 133-T 247
Stack -2.10External closing pair is C 134-G 246
Stack -2.20External closing pair is A 135-T 245
Stack -2.10External closing pair is C 136-G 244
Helix -11.00 6 base pairs.
Interior loop 4.30External closing pair is A 137-T 243
Stack -2.20External closing pair is A 143-T 238
Stack -3.30External closing pair is C 144-G 237
Stack -2.10External closing pair is C 145-G 236
Helix -7.60 4 base pairs.
Multi-loop 2.60External closing pair is T 146-A 235
28 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 191-C 222
Stack -2.10External closing pair is C 192-G 221
Stack -1.10External closing pair is A 193-T 220
Helix -6.60 4 base pairs.
Interior loop 3.60External closing pair is T 194-A 219
Stack -1.40External closing pair is C 200-G 214
Stack -0.50External closing pair is G 201-T 213
Stack -1.30External closing pair is G 202-T 212
Stack -1.40External closing pair is A 203-T 211
Helix -4.60 5 base pairs.
Hairpin loop 4.90Closing pair is T 204-G 210
Stack -1.00External closing pair is T 154-A 181
Stack -2.10External closing pair is G 155-T 180
Stack -2.40External closing pair is G 156-C 179
Stack -0.90External closing pair is A 157-T 178
Helix -6.40 5 base pairs.
Bulge loop 3.20External closing pair is A 158-T 177
Stack -2.50External closing pair is G 159-T 175
Stack -2.10External closing pair is C 160-G 174
Stack -2.10External closing pair is T 161-A 173
Stack -1.50External closing pair is G 162-C 172
Helix -8.20 5 base pairs.
Hairpin loop 6.10Closing pair is G 163-T 171

Structure 26
seq.txt
ΔG = -811.80

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Bulge loop 5.20External closing pair is T 361-G 2222
Stack -3.30External closing pair is C 362-G 2213
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 363-G 2212
Stack -1.30External closing pair is T 365-A 2210
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 366-G 2209
Stack -2.10External closing pair is T 369-A 2206
Helix -2.10 2 base pairs.
Bulge loop 2.80External closing pair is G 370-C 2205
Stack -2.20External closing pair is G 373-C 2204
Stack -0.90External closing pair is T 374-A 2203
Stack -1.30External closing pair is T 375-A 2202
Helix -4.40 4 base pairs.
Interior loop 2.30External closing pair is A 376-T 2201
Stack -2.20External closing pair is A 380-T 2198
Stack -2.10External closing pair is C 381-G 2197
Stack -2.10External closing pair is A 382-T 2196
Helix -6.40 4 base pairs.
Bulge loop 1.60External closing pair is G 383-C 2195
Stack -2.10External closing pair is T 384-A 2193
Stack -2.20External closing pair is G 385-C 2192
Stack -0.90External closing pair is T 386-A 2191
Stack -2.10External closing pair is T 387-A 2190
Helix -7.30 5 base pairs.
Bulge loop 1.40External closing pair is G 388-C 2189
Stack -2.20External closing pair is A 389-T 2187
Stack -3.30External closing pair is C 390-G 2186
Stack -2.10External closing pair is C 391-G 2185
Helix -7.60 4 base pairs.
Bulge loop 2.40External closing pair is A 392-T 2184
Stack -1.00External closing pair is T 393-G 2182
Stack -2.20External closing pair is A 394-T 2181
Stack -3.30External closing pair is C 395-G 2180
Stack -2.10External closing pair is C 396-G 2179
Stack -2.10External closing pair is A 397-T 2178
Helix -10.70 6 base pairs.
Multi-loop 1.90External closing pair is G 398-C 2177
26 ss bases & 4 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.20External closing pair is G 410-C 2109
Stack -2.10External closing pair is T 411-A 2108
Stack -2.40External closing pair is G 412-C 2107
Helix -6.70 4 base pairs.
Interior loop 1.70External closing pair is A 413-T 2106
Stack -1.30External closing pair is G 415-T 2104
Stack -2.10External closing pair is A 416-T 2103
Helix -3.40 3 base pairs.
Multi-loop 4.20External closing pair is G 417-C 2102
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -3.30External closing pair is C 418-G 2078
Stack -2.10External closing pair is C 419-G 2077
Stack -0.90External closing pair is A 420-T 2076
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 421-T 2075
Stack -1.40External closing pair is A 424-T 2072
Stack -1.00External closing pair is T 425-G 2071
Stack -2.20External closing pair is A 426-T 2070
Stack -3.30External closing pair is C 427-G 2069
Stack -2.10External closing pair is C 428-G 2068
Stack -0.90External closing pair is A 429-T 2067
Stack -2.20External closing pair is A 430-T 2066
Stack -2.10External closing pair is C 431-G 2065
Stack -2.10External closing pair is T 432-A 2064
Helix -17.30 10 base pairs.
Multi-loop 0.80External closing pair is G 433-C 2063
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 632-C 2057
Helix -3.30 2 base pairs.
Multi-loop 1.20External closing pair is G 633-C 2056
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1965-C 2049
Stack -3.30External closing pair is C 1966-G 2048
Helix -6.70 3 base pairs.
Multi-loop 2.60External closing pair is C 1967-G 2047
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2011-C 2046
Stack -1.10External closing pair is A 2012-T 2045
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 2013-A 2044
Stack -2.50External closing pair is G 2015-T 2042
Stack -1.40External closing pair is C 2016-G 2041
Stack -1.40External closing pair is G 2017-T 2040
Stack -0.90External closing pair is T 2018-A 2039
Stack -0.90External closing pair is T 2019-A 2038
Stack -0.90External closing pair is T 2020-A 2037
Stack -1.30External closing pair is T 2021-A 2036
Stack 0.30External closing pair is T 2022-G 2035
Helix -9.00 9 base pairs.
Interior loop -0.40External closing pair is G 2023-T 2034
Stack -2.10External closing pair is A 2025-T 2032
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 2026-C 2031
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.40External closing pair is T 638-A 1961
Stack -1.40External closing pair is C 639-G 1960
Stack -2.10External closing pair is G 640-T 1959
Helix -5.90 4 base pairs.
Bulge loop 1.30External closing pair is G 641-C 1958
Stack -1.50External closing pair is T 643-G 1957
Stack -2.10External closing pair is C 644-G 1956
Stack -0.90External closing pair is A 645-T 1955
Stack -0.90External closing pair is A 646-T 1954
Stack -2.10External closing pair is A 647-T 1953
Stack -2.20External closing pair is G 648-C 1952
Stack -0.90External closing pair is T 649-A 1951
Helix -10.60 8 base pairs.
Interior loop 3.00External closing pair is T 650-A 1950
Stack -2.10External closing pair is G 653-T 1946
Stack -2.20External closing pair is G 654-C 1945
Helix -4.30 3 base pairs.
Bulge loop 3.70External closing pair is T 655-A 1944
Stack -3.40External closing pair is G 659-C 1943
Stack -2.10External closing pair is C 660-G 1942
Stack -0.60External closing pair is T 661-G 1941
Stack -0.90External closing pair is T 662-A 1940
Stack -0.90External closing pair is T 663-A 1939
Stack -2.40External closing pair is T 664-A 1938
Stack -2.10External closing pair is C 665-G 1937
Helix -12.40 8 base pairs.
Interior loop -1.00External closing pair is T 666-A 1936
Stack -2.10External closing pair is C 668-G 1934
Helix -2.10 2 base pairs.
Interior loop 1.40External closing pair is T 669-A 1933
Stack -0.60External closing pair is T 672-G 1930
Helix -0.60 2 base pairs.
Interior loop 1.70External closing pair is T 673-A 1929
Stack -0.90External closing pair is A 675-T 1927
Stack -0.90External closing pair is A 676-T 1926
Stack -2.20External closing pair is A 677-T 1925
Stack -2.10External closing pair is C 678-G 1924
Helix -6.10 5 base pairs.
Bulge loop 3.30External closing pair is T 679-G 1923
Stack -3.40External closing pair is G 682-C 1922
Stack -2.10External closing pair is C 683-G 1921
Stack -1.40External closing pair is A 684-T 1920
Stack -1.40External closing pair is T 685-G 1919
Helix -8.30 5 base pairs.
Multi-loop 2.70External closing pair is G 686-C 1918
13 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -4.60 3 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -0.60External closing pair is A 1163-T 1860
Stack -2.10External closing pair is G 1164-T 1859
Stack -2.40External closing pair is G 1165-C 1858
Stack -1.10External closing pair is A 1166-T 1857
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is T 1167-A 1856
Stack -2.50External closing pair is G 1174-T 1850
Stack -3.30External closing pair is C 1175-G 1849
Stack -2.10External closing pair is C 1176-G 1848
Stack -2.40External closing pair is T 1177-A 1847
Stack -2.10External closing pair is C 1178-G 1846
Stack -2.10External closing pair is A 1179-T 1845
Helix -14.50 7 base pairs.
Multi-loop 0.50External closing pair is G 1180-C 1844
23 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is G 1196-C 1437
Stack -1.10External closing pair is A 1197-T 1436
Stack -2.40External closing pair is T 1198-A 1435
Stack -2.10External closing pair is C 1199-G 1434
Helix -8.00 5 base pairs.
Multi-loop 0.10External closing pair is T 1200-A 1433
18 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1429
Stack -2.20External closing pair is G 1303-C 1428
Stack -1.30External closing pair is T 1304-A 1427
Stack -1.10External closing pair is A 1305-T 1426
Helix -7.90 5 base pairs.
Multi-loop 3.90External closing pair is T 1306-A 1425
27 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -1.40External closing pair is G 1329-T 1365
Stack -0.90External closing pair is T 1330-A 1364
Helix -2.30 3 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1363
Stack -3.30External closing pair is C 1333-G 1361
Stack -2.10External closing pair is C 1334-G 1360
Stack -0.90External closing pair is A 1335-T 1359
Helix -6.30 4 base pairs.
Bulge loop 4.60External closing pair is A 1336-T 1358
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.30External closing pair is T 692-A 1160
Stack -1.10External closing pair is A 693-T 1159
Stack -1.30External closing pair is T 694-A 1158
Stack -1.10External closing pair is A 695-T 1157
Helix -4.80 5 base pairs.
Interior loop 2.70External closing pair is T 696-A 1156
Stack -1.30External closing pair is T 698-A 1153
Stack -1.10External closing pair is A 699-T 1152
Stack -2.40External closing pair is T 700-A 1151
Helix -4.80 4 base pairs.
Bulge loop 1.40External closing pair is C 701-G 1150
Stack -3.40External closing pair is G 702-C 1148
Stack -2.10External closing pair is C 703-G 1147
Stack -2.10External closing pair is T 704-A 1146
Stack -2.20External closing pair is G 705-C 1145
Stack -1.30External closing pair is T 706-A 1144
Helix -11.10 6 base pairs.
Interior loop 6.10External closing pair is A 707-T 1143
Stack -2.20External closing pair is A 709-T 1136
Stack -2.10External closing pair is C 710-G 1135
Stack -0.90External closing pair is A 711-T 1134
Stack -2.20External closing pair is A 712-T 1133
Stack -2.10External closing pair is C 713-G 1132
Stack -2.40External closing pair is T 714-A 1131
Helix -11.90 7 base pairs.
Interior loop 2.50External closing pair is C 715-G 1130
Stack -1.30External closing pair is T 720-A 1124
Stack -0.60External closing pair is T 721-G 1123
Helix -1.90 3 base pairs.
Interior loop 1.70External closing pair is T 722-A 1122
Interior loop -2.90External closing pair is T 724-G 1120
Stack -0.90External closing pair is A 727-T 1117
Stack -2.10External closing pair is A 728-T 1116
Helix -3.00 3 base pairs.
Multi-loop -0.60External closing pair is G 729-C 1115
32 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -3.30External closing pair is C 733-G 1075
Stack -1.40External closing pair is C 734-G 1074
Stack -2.10External closing pair is G 735-T 1073
Stack -3.40External closing pair is G 736-C 1072
Stack -2.10External closing pair is C 737-G 1071
Stack -0.90External closing pair is T 738-A 1070
Stack -2.40External closing pair is T 739-A 1069
Helix -15.60 8 base pairs.
Interior loop 1.10External closing pair is C 740-G 1068
Stack -0.90External closing pair is T 742-A 1066
Helix -0.90 2 base pairs.
Interior loop 1.70External closing pair is T 743-A 1065
Stack -1.30External closing pair is T 746-A 1062
Stack -0.90External closing pair is A 747-T 1061
Stack -0.60External closing pair is A 748-T 1060
Helix -2.80 4 base pairs.
Interior loop 2.70External closing pair is G 749-T 1059
Stack -2.10External closing pair is T 752-A 1057
Stack -3.30External closing pair is G 753-C 1056
Stack -2.50External closing pair is G 754-C 1055
Helix -7.90 4 base pairs.
Multi-loop 3.00External closing pair is T 755-G 1054
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -2.10External closing pair is T 759-A 768
Stack -3.30External closing pair is G 760-C 767
Helix -5.40 3 base pairs.
Hairpin loop 4.50Closing pair is G 761-C 766
Stack -1.40External closing pair is G 439-T 629
Stack -2.10External closing pair is T 440-A 628
Stack -2.20External closing pair is G 441-C 627
Stack -2.40External closing pair is T 442-A 626
Helix -8.10 5 base pairs.
Interior loop 2.00External closing pair is C 443-G 625
Stack -0.90External closing pair is A 447-T 621
Stack -0.90External closing pair is A 448-T 620
Stack -2.20External closing pair is A 449-T 619
Stack -1.40External closing pair is C 450-G 618
Stack -2.10External closing pair is G 451-T 617
Helix -7.50 6 base pairs.
Interior loop 3.30External closing pair is G 452-C 616
Stack -0.90External closing pair is A 458-T 613
Stack -1.40External closing pair is A 459-T 612
Stack 0.30External closing pair is T 460-G 611
Stack -2.10External closing pair is G 461-T 610
Stack -2.40External closing pair is G 462-C 609
Stack -2.10External closing pair is A 463-T 608
Stack -2.40External closing pair is G 464-C 607
Helix -11.00 8 base pairs.
Interior loop 4.10External closing pair is A 465-T 606
Stack -1.00External closing pair is T 467-A 602
Stack -1.30External closing pair is G 468-T 601
Stack -0.60External closing pair is A 469-T 600
Stack -1.30External closing pair is G 470-T 599
Stack -0.90External closing pair is A 471-T 598
Stack -0.90External closing pair is A 472-T 597
Helix -6.00 7 base pairs.
Multi-loop 3.00External closing pair is A 473-T 596
19 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 519-C 589
Stack -2.20External closing pair is G 520-C 588
Stack -1.00External closing pair is T 521-A 587
Stack -1.30External closing pair is G 522-T 586
Helix -7.80 5 base pairs.
Bulge loop 3.80External closing pair is A 523-T 585
Stack -2.10External closing pair is A 524-T 582
Stack -3.40External closing pair is G 525-C 581
Helix -5.50 3 base pairs.
Interior loop 4.10External closing pair is C 526-G 580
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 486-A 517
Stack -1.10External closing pair is A 487-T 516
Stack -0.90External closing pair is T 488-A 515
Stack -0.90External closing pair is T 489-A 514
Stack -1.30External closing pair is T 490-A 513
Stack -1.40External closing pair is T 491-G 512
Stack -3.30External closing pair is G 492-C 511
Helix -10.20 8 base pairs.
Hairpin loop 5.90Closing pair is G 493-C 510
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 27
seq.txt
ΔG = -811.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Bulge loop 5.20External closing pair is T 361-G 2222
Stack -3.30External closing pair is C 362-G 2213
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 363-G 2212
Stack -1.30External closing pair is T 365-A 2210
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 366-G 2209
Stack -2.10External closing pair is T 369-A 2206
Helix -2.10 2 base pairs.
Bulge loop 2.80External closing pair is G 370-C 2205
Stack -2.20External closing pair is G 373-C 2204
Stack -0.90External closing pair is T 374-A 2203
Stack -1.30External closing pair is T 375-A 2202
Helix -4.40 4 base pairs.
Interior loop 2.30External closing pair is A 376-T 2201
Stack -2.20External closing pair is A 380-T 2198
Stack -2.10External closing pair is C 381-G 2197
Stack -2.10External closing pair is A 382-T 2196
Helix -6.40 4 base pairs.
Bulge loop 1.60External closing pair is G 383-C 2195
Stack -2.10External closing pair is T 384-A 2193
Stack -2.20External closing pair is G 385-C 2192
Stack -0.90External closing pair is T 386-A 2191
Stack -2.10External closing pair is T 387-A 2190
Helix -7.30 5 base pairs.
Bulge loop 1.40External closing pair is G 388-C 2189
Stack -2.20External closing pair is A 389-T 2187
Stack -3.30External closing pair is C 390-G 2186
Stack -2.10External closing pair is C 391-G 2185
Helix -7.60 4 base pairs.
Bulge loop 2.40External closing pair is A 392-T 2184
Stack -1.00External closing pair is T 393-G 2182
Stack -2.20External closing pair is A 394-T 2181
Stack -3.30External closing pair is C 395-G 2180
Stack -2.10External closing pair is C 396-G 2179
Stack -2.10External closing pair is A 397-T 2178
Helix -10.70 6 base pairs.
Multi-loop 1.90External closing pair is G 398-C 2177
26 ss bases & 4 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.20External closing pair is G 410-C 2109
Stack -2.10External closing pair is T 411-A 2108
Stack -2.40External closing pair is G 412-C 2107
Helix -6.70 4 base pairs.
Interior loop 1.70External closing pair is A 413-T 2106
Stack -1.30External closing pair is G 415-T 2104
Stack -2.10External closing pair is A 416-T 2103
Helix -3.40 3 base pairs.
Multi-loop 4.20External closing pair is G 417-C 2102
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -3.30External closing pair is C 418-G 2078
Stack -2.10External closing pair is C 419-G 2077
Stack -0.90External closing pair is A 420-T 2076
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 421-T 2075
Stack -1.40External closing pair is A 424-T 2072
Stack -1.00External closing pair is T 425-G 2071
Stack -2.20External closing pair is A 426-T 2070
Stack -3.30External closing pair is C 427-G 2069
Stack -2.10External closing pair is C 428-G 2068
Stack -0.90External closing pair is A 429-T 2067
Stack -2.20External closing pair is A 430-T 2066
Stack -2.10External closing pair is C 431-G 2065
Stack -2.10External closing pair is T 432-A 2064
Helix -17.30 10 base pairs.
Multi-loop 1.10External closing pair is G 433-C 2063
10 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is T 849-A 2044
Stack -2.40External closing pair is G 850-C 2043
Stack -2.20External closing pair is A 851-T 2042
Stack -2.10External closing pair is C 852-G 2041
Helix -8.80 5 base pairs.
Interior loop 4.60External closing pair is A 853-T 2040
Stack -2.20External closing pair is A 862-T 2034
Stack -1.40External closing pair is C 863-G 2033
Stack -2.10External closing pair is G 864-T 2032
Stack -2.50External closing pair is G 865-C 2031
Stack -1.00External closing pair is T 866-G 2030
Stack -0.90External closing pair is A 867-T 2029
Stack -2.10External closing pair is A 868-T 2028
Stack -3.40External closing pair is G 869-C 2027
Helix -15.60 9 base pairs.
Multi-loop 2.40External closing pair is C 870-G 2026
15 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -10.00 9 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.30External closing pair is G 885-C 1991
Stack -3.40External closing pair is G 886-C 1990
Helix -6.70 3 base pairs.
Interior loop 1.20External closing pair is C 887-G 1989
Stack -0.90External closing pair is T 892-A 1984
Stack -0.90External closing pair is T 893-A 1983
Stack -2.40External closing pair is T 894-A 1982
Helix -4.20 4 base pairs.
Multi-loop 0.40External closing pair is C 895-G 1981
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 898-C 1949
Stack -0.90External closing pair is A 899-T 1948
Stack -0.60External closing pair is A 900-T 1947
Stack -2.10External closing pair is G 901-T 1946
Stack -2.20External closing pair is G 902-C 1945
Stack -2.10External closing pair is T 903-A 1944
Stack -3.40External closing pair is G 904-C 1943
Stack -3.30External closing pair is C 905-G 1942
Stack -2.10External closing pair is C 906-G 1941
Helix -19.10 10 base pairs.
Interior loop 4.20External closing pair is T 907-A 1940
Stack -2.40External closing pair is T 914-A 1936
Stack -3.30External closing pair is C 915-G 1935
Helix -5.70 3 base pairs.
Interior loop 1.40External closing pair is C 916-G 1934
Stack -1.30External closing pair is G 919-T 1932
Stack -2.20External closing pair is A 920-T 1931
Stack -2.10External closing pair is C 921-G 1930
Stack -1.30External closing pair is T 922-A 1929
Helix -6.90 5 base pairs.
Multi-loop 4.70External closing pair is A 923-T 1928
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 967-T 1927
Stack -1.30External closing pair is G 968-T 1926
Stack -2.20External closing pair is A 969-T 1925
Helix -4.10 4 base pairs.
Multi-loop 0.60External closing pair is C 970-G 1924
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1225-C 1922
Stack -2.10External closing pair is C 1226-G 1921
Stack -1.40External closing pair is A 1227-T 1920
Helix -6.90 4 base pairs.
Interior loop 1.70External closing pair is T 1228-G 1919
Stack -2.10External closing pair is A 1230-T 1917
Stack -2.20External closing pair is G 1231-C 1916
Stack -0.90External closing pair is T 1232-A 1915
Helix -5.20 4 base pairs.
Multi-loop 2.50External closing pair is T 1233-A 1914
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1257-G 1909
Stack -2.10External closing pair is C 1258-G 1908
Stack -1.30External closing pair is T 1259-A 1907
Stack -0.60External closing pair is T 1260-G 1906
Stack -1.30External closing pair is T 1261-A 1905
Helix -8.60 6 base pairs.
Interior loop 1.90External closing pair is A 1262-T 1904
Stack -0.90External closing pair is T 1265-A 1900
Stack -0.90External closing pair is T 1266-A 1899
Stack -0.90External closing pair is T 1267-A 1898
Stack -2.40External closing pair is T 1268-A 1897
Helix -5.10 5 base pairs.
Multi-loop -1.20External closing pair is C 1269-G 1896
24 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is G 1273-C 1863
Stack -1.40External closing pair is A 1274-T 1862
Stack -1.00External closing pair is T 1275-G 1861
Stack -0.90External closing pair is A 1276-T 1860
Stack -2.10External closing pair is A 1277-T 1859
Helix -7.80 6 base pairs.
Multi-loop 0.10External closing pair is G 1278-C 1858
31 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -7.40 5 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -0.90External closing pair is T 974-A 1222
Stack -2.40External closing pair is T 975-A 1221
Stack -3.30External closing pair is C 976-G 1220
Stack -3.30External closing pair is C 977-G 1219
Stack -1.40External closing pair is C 978-G 1218
Stack -2.10External closing pair is G 979-T 1217
Stack -2.40External closing pair is G 980-C 1216
Helix -15.80 8 base pairs.
Interior loop 4.70External closing pair is A 981-T 1215
Stack -1.00External closing pair is T 983-A 1210
Stack -2.10External closing pair is G 984-T 1209
Stack -2.50External closing pair is G 985-C 1208
Stack -1.50External closing pair is T 986-G 1207
Stack -2.10External closing pair is C 987-G 1206
Helix -9.20 6 base pairs.
Multi-loop 3.00External closing pair is A 988-T 1205
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -2.50External closing pair is G 995-C 1175
Stack -1.00External closing pair is T 996-G 1174
Helix -3.50 3 base pairs.
Bulge loop 2.70External closing pair is A 997-T 1173
Stack -0.90External closing pair is T 998-A 1171
Stack -0.90External closing pair is T 999-A 1170
Helix -1.80 3 base pairs.
Interior loop -2.50External closing pair is T 1000-A 1169
Stack -2.40External closing pair is T 1003-A 1166
Stack -2.10External closing pair is C 1004-G 1165
Helix -4.50 3 base pairs.
Multi-loop 2.60External closing pair is T 1005-G 1164
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -3.40External closing pair is G 1014-C 1030
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1015-G 1029
Stack -2.10External closing pair is A 1017-T 1027
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -5.60 4 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.20External closing pair is A 435-T 846
Stack -2.10External closing pair is C 436-G 845
Stack -1.30External closing pair is T 437-A 844
Stack -0.60External closing pair is A 438-T 843
Stack -1.40External closing pair is G 439-T 842
Helix -7.60 6 base pairs.
Bulge loop 2.90External closing pair is T 440-A 841
Stack -2.40External closing pair is T 442-A 840
Stack -2.10External closing pair is C 443-G 839
Stack -2.10External closing pair is T 444-A 838
Helix -6.60 4 base pairs.
Interior loop 4.00External closing pair is G 445-C 837
Stack -3.30External closing pair is G 451-C 835
Stack -2.40External closing pair is G 452-C 834
Stack -0.90External closing pair is A 453-T 833
Helix -6.60 4 base pairs.
Multi-loop 1.70External closing pair is A 454-T 832
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -0.90External closing pair is A 457-T 771
Stack -0.90External closing pair is A 458-T 770
Stack -1.10External closing pair is A 459-T 769
Stack -2.10External closing pair is T 460-A 768
Stack -3.30External closing pair is G 461-C 767
Helix -8.30 6 base pairs.
Multi-loop 0.90External closing pair is G 462-C 766
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is C 474-G 614
Stack -0.90External closing pair is A 475-T 613
Stack -2.20External closing pair is A 476-T 612
Stack -2.10External closing pair is C 477-G 611
Stack -2.10External closing pair is A 478-T 610
Helix -9.40 6 base pairs.
Multi-loop 2.60External closing pair is G 479-C 609
26 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 519-C 589
Stack -2.20External closing pair is G 520-C 588
Stack -1.00External closing pair is T 521-A 587
Stack -1.30External closing pair is G 522-T 586
Helix -7.80 5 base pairs.
Bulge loop 3.80External closing pair is A 523-T 585
Stack -2.10External closing pair is A 524-T 582
Stack -3.40External closing pair is G 525-C 581
Helix -5.50 3 base pairs.
Interior loop 4.10External closing pair is C 526-G 580
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 486-A 517
Stack -1.10External closing pair is A 487-T 516
Stack -0.90External closing pair is T 488-A 515
Stack -0.90External closing pair is T 489-A 514
Stack -1.30External closing pair is T 490-A 513
Stack -1.40External closing pair is T 491-G 512
Stack -3.30External closing pair is G 492-C 511
Helix -10.20 8 base pairs.
Hairpin loop 5.90Closing pair is G 493-C 510
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 28
seq.txt
ΔG = -810.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.90External closing pair is T 384-G 2030
7 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 525-C 1990
Stack -2.10External closing pair is C 526-G 1989
Stack -0.90External closing pair is A 527-T 1988
Stack -1.10External closing pair is A 528-T 1987
Stack -0.90External closing pair is T 529-A 1986
Stack -0.90External closing pair is T 530-A 1985
Stack -0.90External closing pair is T 531-A 1984
Helix -10.20 8 base pairs.
Multi-loop 2.80External closing pair is T 532-A 1983
8 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 1941-C 1980
Helix -3.30 2 base pairs.
Interior loop 3.00External closing pair is G 1942-C 1979
Stack -2.20External closing pair is A 1944-T 1976
Stack -2.10External closing pair is C 1945-G 1975
Helix -4.30 3 base pairs.
Interior loop 4.10External closing pair is T 1946-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Bulge loop 6.50External closing pair is G 611-T 1892
Stack -0.90External closing pair is T 612-A 1874
Stack -1.00External closing pair is T 613-A 1873
Stack -2.50External closing pair is G 614-T 1872
Stack -3.30External closing pair is C 615-G 1871
Helix -7.70 5 base pairs.
Bulge loop 1.40External closing pair is C 616-G 1870
Stack -2.20External closing pair is G 618-C 1869
Stack -0.90External closing pair is T 619-A 1868
Helix -3.10 3 base pairs.
Interior loop 4.00External closing pair is T 620-A 1867
Stack -1.40External closing pair is A 623-T 1865
Stack -1.40External closing pair is T 624-G 1864
Stack -2.40External closing pair is G 625-C 1863
Stack -2.20External closing pair is A 626-T 1862
Stack -2.10External closing pair is C 627-G 1861
Helix -9.50 6 base pairs.
Interior loop 1.10External closing pair is A 628-T 1860
Stack -2.40External closing pair is G 630-C 1858
Helix -2.40 2 base pairs.
Bulge loop 3.70External closing pair is A 631-T 1857
Stack -1.50External closing pair is G 632-C 1853
Stack -1.30External closing pair is G 633-T 1852
Stack -0.90External closing pair is A 634-T 1851
Helix -3.70 4 base pairs.
Interior loop 0.30External closing pair is A 635-T 1850
Stack -2.40External closing pair is T 638-A 1847
Stack -1.40External closing pair is C 639-G 1846
Stack -2.10External closing pair is G 640-T 1845
Helix -5.90 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 1844
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 666-A 1823
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 667-C 1822
Stack -2.40External closing pair is T 669-A 1820
Stack -2.10External closing pair is C 670-G 1819
Stack -0.90External closing pair is T 671-A 1818
Stack -0.90External closing pair is T 672-A 1817
Stack -2.40External closing pair is T 673-A 1816
Helix -8.70 6 base pairs.
Multi-loop 1.20External closing pair is C 674-G 1815
13 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -3.40External closing pair is G 682-C 1757
Stack -2.10External closing pair is C 683-G 1756
Stack -1.10External closing pair is A 684-T 1755
Helix -6.60 4 base pairs.
Bulge loop 3.80External closing pair is T 685-A 1754
Stack -2.50External closing pair is G 686-T 1751
Stack -2.40External closing pair is C 687-G 1750
Stack -3.40External closing pair is G 688-C 1749
Stack -2.10External closing pair is C 689-G 1748
Stack -1.10External closing pair is A 690-T 1747
Helix -11.50 6 base pairs.
Multi-loop 4.10External closing pair is T 691-A 1746
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.30External closing pair is T 692-A 1716
Stack -1.10External closing pair is A 693-T 1715
Stack -1.30External closing pair is T 694-A 1714
Stack -1.10External closing pair is A 695-T 1713
Stack -1.30External closing pair is T 696-A 1712
Stack -0.60External closing pair is T 697-G 1711
Helix -6.70 7 base pairs.
Interior loop 1.70External closing pair is T 698-A 1710
Stack -2.40External closing pair is T 700-A 1708
Stack -2.40External closing pair is C 701-G 1707
Stack -3.40External closing pair is G 702-C 1706
Helix -8.20 4 base pairs.
Interior loop 0.40External closing pair is C 703-G 1705
Stack -2.20External closing pair is G 705-C 1703
Helix -2.20 2 base pairs.
Bulge loop 1.40External closing pair is T 706-A 1702
Stack -2.10External closing pair is C 708-G 1701
Stack -2.20External closing pair is A 709-T 1700
Helix -4.30 3 base pairs.
Multi-loop 1.80External closing pair is C 710-G 1699
15 ss bases & 5 closing helices.
Stack -2.40External closing pair is G 1648-C 1696
Stack -2.10External closing pair is A 1649-T 1695
Stack -2.20External closing pair is G 1650-C 1694
Stack -0.90External closing pair is T 1651-A 1693
Stack -0.90External closing pair is T 1652-A 1692
Stack -1.30External closing pair is T 1653-A 1691
Helix -9.80 7 base pairs.
Bulge loop 4.50External closing pair is T 1654-G 1690
Stack -2.10External closing pair is C 1655-G 1684
Stack -2.10External closing pair is A 1656-T 1683
Stack -2.40External closing pair is G 1657-C 1682
Stack -0.90External closing pair is A 1658-T 1681
Helix -7.50 5 base pairs.
Bulge loop 4.10External closing pair is A 1659-T 1680
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 963-A 1631
Stack -3.40External closing pair is G 964-C 1630
Stack -2.10External closing pair is C 965-G 1629
Helix -7.60 4 base pairs.
Interior loop 0.00External closing pair is T 966-A 1628
Stack -2.20External closing pair is A 969-T 1625
Helix -2.20 2 base pairs.
Multi-loop 1.10External closing pair is C 970-G 1624
15 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 979-C 1595
Helix -3.30 2 base pairs.
Bulge loop 1.60External closing pair is G 980-C 1594
Stack -0.90External closing pair is T 982-A 1593
Stack -2.10External closing pair is T 983-A 1592
Stack -3.30External closing pair is G 984-C 1591
Helix -6.30 4 base pairs.
Interior loop 3.30External closing pair is G 985-C 1590
Stack -0.90External closing pair is T 991-A 1586
Stack -2.40External closing pair is T 992-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 993-G 1584
Stack -2.10External closing pair is T 994-A 1582
Stack -2.20External closing pair is G 995-C 1581
Stack -1.30External closing pair is T 996-A 1580
Stack -1.10External closing pair is A 997-T 1579
Stack -1.30External closing pair is T 998-A 1578
Stack -0.50External closing pair is T 999-G 1577
Stack -0.60External closing pair is T 1000-G 1576
Stack -2.10External closing pair is T 1001-A 1575
Stack -2.20External closing pair is G 1002-C 1574
Helix -13.40 10 base pairs.
Multi-loop 3.90External closing pair is T 1003-A 1573
30 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1511-A 1567
Stack -0.90External closing pair is T 1512-A 1566
Stack -0.90External closing pair is T 1513-A 1565
Stack -0.90External closing pair is T 1514-A 1564
Stack -2.10External closing pair is T 1515-A 1563
Stack -3.40External closing pair is G 1516-C 1562
Stack -2.10External closing pair is C 1517-G 1561
Helix -11.20 8 base pairs.
Bulge loop 3.70External closing pair is A 1518-T 1560
Stack -3.40External closing pair is G 1522-C 1559
Stack -2.10External closing pair is C 1523-G 1558
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is A 1524-T 1557
Stack -1.30External closing pair is T 1526-A 1555
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -7.90 6 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -1.30External closing pair is G 1024-T 1505
Stack -2.20External closing pair is A 1025-T 1504
Stack -2.10External closing pair is C 1026-G 1503
Stack -0.90External closing pair is T 1027-A 1502
Stack -2.10External closing pair is T 1028-A 1501
Stack -3.40External closing pair is G 1029-C 1500
Stack -2.10External closing pair is C 1030-G 1499
Helix -14.10 8 base pairs.
Multi-loop 4.70External closing pair is T 1031-A 1498
14 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -0.90External closing pair is A 1121-T 1455
Stack -2.10External closing pair is A 1122-T 1454
Helix -3.00 3 base pairs.
Bulge loop 1.40External closing pair is G 1123-C 1453
Stack -2.10External closing pair is A 1124-T 1451
Stack -1.50External closing pair is G 1125-C 1450
Stack -1.30External closing pair is G 1126-T 1449
Stack -2.20External closing pair is A 1127-T 1448
Stack -1.40External closing pair is C 1128-G 1447
Stack -2.10External closing pair is G 1129-T 1446
Stack -2.40External closing pair is G 1130-C 1445
Stack -0.60External closing pair is A 1131-T 1444
Stack -1.40External closing pair is G 1132-T 1443
Stack -1.30External closing pair is T 1133-A 1442
Helix -16.30 11 base pairs.
Interior loop 1.70External closing pair is T 1134-G 1441
Stack -2.40External closing pair is T 1136-A 1439
Helix -2.40 2 base pairs.
Multi-loop 1.20External closing pair is C 1137-G 1438
30 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -1.30External closing pair is T 1032-A 1114
Stack -0.60External closing pair is T 1033-G 1113
Stack -2.10External closing pair is T 1034-A 1112
Stack -2.20External closing pair is G 1035-C 1111
Stack -2.40External closing pair is T 1036-A 1110
Stack -2.10External closing pair is C 1037-G 1109
Stack -2.10External closing pair is T 1038-A 1108
Helix -12.80 8 base pairs.
Interior loop 3.40External closing pair is G 1039-C 1107
Stack -2.40External closing pair is T 1051-A 1095
Stack -2.10External closing pair is C 1052-G 1094
Stack -2.10External closing pair is T 1053-A 1093
Helix -6.60 4 base pairs.
Bulge loop 5.60External closing pair is G 1054-C 1092
Stack -2.10External closing pair is T 1067-A 1091
Stack -2.40External closing pair is G 1068-C 1090
Stack -0.90External closing pair is A 1069-T 1089
Helix -5.40 4 base pairs.
Interior loop 2.60External closing pair is A 1070-T 1088
Stack -2.10External closing pair is T 1073-A 1084
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 1074-C 1083
Stack -2.10External closing pair is C 715-G 955
Stack -2.20External closing pair is A 716-T 954
Stack -2.10External closing pair is C 717-G 953
Helix -6.40 4 base pairs.
Bulge loop 2.70External closing pair is A 718-T 952
Stack -1.30External closing pair is T 720-A 951
Stack -0.50External closing pair is T 721-G 950
Stack -1.00External closing pair is T 722-G 949
Helix -2.80 4 base pairs.
Interior loop 1.20External closing pair is A 723-T 948
Stack -2.10External closing pair is T 725-A 946
Stack -2.40External closing pair is G 726-C 945
Stack -0.90External closing pair is A 727-T 944
Stack -2.10External closing pair is A 728-T 943
Helix -7.50 5 base pairs.
Interior loop 4.70External closing pair is G 729-C 942
Stack -2.10External closing pair is G 735-T 940
Stack -3.40External closing pair is G 736-C 939
Stack -2.10External closing pair is C 737-G 938
Helix -7.60 4 base pairs.
Interior loop 4.00External closing pair is T 738-A 937
Stack -1.30External closing pair is T 746-A 927
Stack -0.90External closing pair is A 747-T 926
Stack -2.10External closing pair is A 748-T 925
Stack -2.20External closing pair is G 749-C 924
Helix -6.50 5 base pairs.
Bulge loop 3.80External closing pair is T 750-A 923
Stack -2.10External closing pair is G 753-T 922
Stack -2.20External closing pair is G 754-C 921
Stack -2.40External closing pair is T 755-A 920
Helix -6.70 4 base pairs.
Multi-loop 0.30External closing pair is C 756-G 919
14 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 787-C 916
Helix -3.30 2 base pairs.
Interior loop 2.10External closing pair is G 788-C 915
Stack -0.90External closing pair is T 791-A 913
Stack -1.30External closing pair is T 792-A 912
Stack -0.90External closing pair is A 793-T 911
Stack -2.10External closing pair is A 794-T 910
Helix -5.20 5 base pairs.
Multi-loop 1.70External closing pair is G 795-C 909
8 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 813-C 906
Stack -3.40External closing pair is G 814-C 905
Stack -2.10External closing pair is C 815-G 904
Stack -1.40External closing pair is A 816-T 903
Helix -10.20 5 base pairs.
Interior loop -0.20External closing pair is T 817-G 902
Stack -2.40External closing pair is T 820-A 899
Helix -2.40 2 base pairs.
Interior loop 2.20External closing pair is C 821-G 898
Stack -2.20External closing pair is A 825-T 892
Stack -2.10External closing pair is C 826-G 891
Helix -4.30 3 base pairs.
Multi-loop 3.30External closing pair is A 827-T 890
27 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 868-T 888
Stack -3.40External closing pair is G 869-C 887
Helix -5.50 3 base pairs.
Interior loop 0.00External closing pair is C 870-G 886
Stack -2.10External closing pair is C 873-G 883
Stack -1.10External closing pair is A 874-T 882
Helix -3.20 3 base pairs.
Hairpin loop 4.80Closing pair is T 875-A 881
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -2.20External closing pair is A 762-T 779
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -7.80 5 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Interior loop -0.40External closing pair is T 387-A 523
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 29
seq.txt
ΔG = -809.60

Structural elementδGInformation
External loop -4.30 18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 2644-C 3128
Stack -0.60External closing pair is T 2645-G 3127
Stack -2.10External closing pair is T 2646-A 3126
Stack -2.40External closing pair is G 2647-C 3125
Helix -7.60 5 base pairs.
Multi-loop 3.20External closing pair is A 2648-T 3124
30 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -3.40External closing pair is G 811-C 2639
Stack -2.40External closing pair is C 812-G 2638
Stack -3.30External closing pair is G 813-C 2637
Helix -9.10 4 base pairs.
Interior loop 3.20External closing pair is G 814-C 2636
Stack -2.40External closing pair is T 820-A 2630
Stack -2.40External closing pair is C 821-G 2629
Stack -3.40External closing pair is G 822-C 2628
Stack -2.10External closing pair is C 823-G 2627
Helix -10.30 5 base pairs.
Multi-loop 3.30External closing pair is T 824-A 2626
25 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -0.90External closing pair is T 832-A 2098
Stack -2.40External closing pair is T 833-A 2097
Stack -3.30External closing pair is C 834-G 2096
Stack -2.10External closing pair is C 835-G 2095
Helix -8.70 5 base pairs.
Bulge loop 1.60External closing pair is A 836-T 2094
Stack -2.10External closing pair is C 837-G 2092
Stack -0.60External closing pair is A 838-T 2091
Helix -2.70 3 base pairs.
Bulge loop 2.50External closing pair is G 839-T 2090
Stack -0.90External closing pair is A 840-T 2088
Stack -1.10External closing pair is A 841-T 2087
Stack -0.90External closing pair is T 842-A 2086
Stack -1.30External closing pair is T 843-A 2085
Stack -0.60External closing pair is A 844-T 2084
Stack -1.40External closing pair is G 845-T 2083
Helix -6.20 7 base pairs.
Multi-loop 3.00External closing pair is T 846-A 2082
5 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2047-C 2080
Stack -2.50External closing pair is G 2048-T 2079
Stack -2.10External closing pair is C 2049-G 2078
Stack -1.00External closing pair is T 2050-G 2077
Helix -7.10 5 base pairs.
Bulge loop 3.80External closing pair is A 2051-T 2076
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -2.10External closing pair is T 849-A 2044
Stack -2.40External closing pair is G 850-C 2043
Stack -2.20External closing pair is A 851-T 2042
Stack -2.10External closing pair is C 852-G 2041
Helix -8.80 5 base pairs.
Interior loop 4.60External closing pair is A 853-T 2040
Stack -2.20External closing pair is A 862-T 2034
Stack -1.40External closing pair is C 863-G 2033
Stack -2.10External closing pair is G 864-T 2032
Stack -2.50External closing pair is G 865-C 2031
Stack -1.00External closing pair is T 866-G 2030
Stack -0.90External closing pair is A 867-T 2029
Stack -2.10External closing pair is A 868-T 2028
Stack -3.40External closing pair is G 869-C 2027
Helix -15.60 9 base pairs.
Multi-loop 2.40External closing pair is C 870-G 2026
15 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -10.00 9 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.30External closing pair is G 885-C 1991
Stack -3.40External closing pair is G 886-C 1990
Helix -6.70 3 base pairs.
Interior loop 1.20External closing pair is C 887-G 1989
Stack -0.90External closing pair is T 892-A 1984
Stack -0.90External closing pair is T 893-A 1983
Stack -2.40External closing pair is T 894-A 1982
Helix -4.20 4 base pairs.
Multi-loop 0.40External closing pair is C 895-G 1981
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 898-C 1949
Stack -0.90External closing pair is A 899-T 1948
Stack -0.60External closing pair is A 900-T 1947
Stack -2.10External closing pair is G 901-T 1946
Stack -2.20External closing pair is G 902-C 1945
Stack -2.10External closing pair is T 903-A 1944
Stack -3.40External closing pair is G 904-C 1943
Stack -3.30External closing pair is C 905-G 1942
Stack -2.10External closing pair is C 906-G 1941
Helix -19.10 10 base pairs.
Interior loop 4.20External closing pair is T 907-A 1940
Stack -2.40External closing pair is T 914-A 1936
Stack -3.30External closing pair is C 915-G 1935
Helix -5.70 3 base pairs.
Interior loop 1.40External closing pair is C 916-G 1934
Stack -1.30External closing pair is G 919-T 1932
Stack -2.20External closing pair is A 920-T 1931
Stack -2.10External closing pair is C 921-G 1930
Stack -1.30External closing pair is T 922-A 1929
Helix -6.90 5 base pairs.
Multi-loop 4.70External closing pair is A 923-T 1928
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 967-T 1927
Stack -1.30External closing pair is G 968-T 1926
Stack -2.20External closing pair is A 969-T 1925
Helix -4.10 4 base pairs.
Multi-loop 0.60External closing pair is C 970-G 1924
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1225-C 1922
Stack -2.10External closing pair is C 1226-G 1921
Stack -1.40External closing pair is A 1227-T 1920
Helix -6.90 4 base pairs.
Interior loop 1.70External closing pair is T 1228-G 1919
Stack -2.10External closing pair is A 1230-T 1917
Stack -2.20External closing pair is G 1231-C 1916
Stack -0.90External closing pair is T 1232-A 1915
Helix -5.20 4 base pairs.
Multi-loop 2.50External closing pair is T 1233-A 1914
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1257-G 1909
Stack -2.10External closing pair is C 1258-G 1908
Stack -1.30External closing pair is T 1259-A 1907
Stack -0.60External closing pair is T 1260-G 1906
Stack -1.30External closing pair is T 1261-A 1905
Helix -8.60 6 base pairs.
Interior loop 1.90External closing pair is A 1262-T 1904
Stack -0.90External closing pair is T 1265-A 1900
Stack -0.90External closing pair is T 1266-A 1899
Stack -0.90External closing pair is T 1267-A 1898
Stack -2.40External closing pair is T 1268-A 1897
Helix -5.10 5 base pairs.
Multi-loop -1.20External closing pair is C 1269-G 1896
24 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is G 1273-C 1863
Stack -1.40External closing pair is A 1274-T 1862
Stack -1.00External closing pair is T 1275-G 1861
Stack -0.90External closing pair is A 1276-T 1860
Stack -2.10External closing pair is A 1277-T 1859
Helix -7.80 6 base pairs.
Multi-loop 0.10External closing pair is G 1278-C 1858
31 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -7.40 5 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -0.90External closing pair is T 974-A 1222
Stack -2.40External closing pair is T 975-A 1221
Stack -3.30External closing pair is C 976-G 1220
Stack -3.30External closing pair is C 977-G 1219
Stack -1.40External closing pair is C 978-G 1218
Stack -2.10External closing pair is G 979-T 1217
Stack -2.40External closing pair is G 980-C 1216
Helix -15.80 8 base pairs.
Interior loop 4.70External closing pair is A 981-T 1215
Stack -1.00External closing pair is T 983-A 1210
Stack -2.10External closing pair is G 984-T 1209
Stack -2.50External closing pair is G 985-C 1208
Stack -1.50External closing pair is T 986-G 1207
Stack -2.10External closing pair is C 987-G 1206
Helix -9.20 6 base pairs.
Multi-loop 3.00External closing pair is A 988-T 1205
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -2.50External closing pair is G 995-C 1175
Stack -1.00External closing pair is T 996-G 1174
Helix -3.50 3 base pairs.
Bulge loop 2.70External closing pair is A 997-T 1173
Stack -0.90External closing pair is T 998-A 1171
Stack -0.90External closing pair is T 999-A 1170
Helix -1.80 3 base pairs.
Interior loop -2.50External closing pair is T 1000-A 1169
Stack -2.40External closing pair is T 1003-A 1166
Stack -2.10External closing pair is C 1004-G 1165
Helix -4.50 3 base pairs.
Multi-loop 2.60External closing pair is T 1005-G 1164
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -3.40External closing pair is G 1014-C 1030
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1015-G 1029
Stack -2.10External closing pair is A 1017-T 1027
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -5.60 4 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.20External closing pair is G 3-C 808
Stack -2.40External closing pair is T 4-A 807
Helix -4.60 3 base pairs.
Bulge loop 3.30External closing pair is C 5-G 806
Stack -2.20External closing pair is A 6-T 803
Stack -2.10External closing pair is C 7-G 802
Stack -0.90External closing pair is T 8-A 801
Helix -5.20 4 base pairs.
Interior loop 3.70External closing pair is T 9-A 800
Stack -2.10External closing pair is C 12-G 795
Stack -0.90External closing pair is T 13-A 794
Stack -1.30External closing pair is T 14-A 793
Stack -0.90External closing pair is A 15-T 792
Stack -0.90External closing pair is A 16-T 791
Helix -6.10 6 base pairs.
Interior loop 0.00External closing pair is A 17-T 790
Stack -1.40External closing pair is C 20-G 787
Stack -1.30External closing pair is G 21-T 786
Stack -1.10External closing pair is A 22-T 785
Stack -1.30External closing pair is T 23-A 784
Stack -0.60External closing pair is A 24-T 783
Stack -1.40External closing pair is G 25-T 782
Helix -7.10 7 base pairs.
Multi-loop 3.50External closing pair is T 26-A 781
4 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 115-T 779
Stack -2.10External closing pair is C 116-G 778
Stack -1.00External closing pair is T 117-A 777
Stack -2.50External closing pair is G 118-T 776
Helix -8.10 5 base pairs.
Multi-loop 3.20External closing pair is C 119-G 775
16 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 759-A 768
Stack -3.30External closing pair is G 760-C 767
Helix -5.40 3 base pairs.
Hairpin loop 4.50Closing pair is G 761-C 766
Stack -1.40External closing pair is G 130-T 758
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -8.10 5 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -2.10External closing pair is C 28-G 112
Stack -1.40External closing pair is A 29-T 111
Stack -0.60External closing pair is T 30-G 110
Helix -4.10 4 base pairs.
Interior loop -2.90External closing pair is T 31-A 109
Stack -1.40External closing pair is G 34-T 106
Stack -1.30External closing pair is T 35-A 105
Stack -0.90External closing pair is A 36-T 104
Stack -0.90External closing pair is A 37-T 103
Stack -0.60External closing pair is A 38-T 102
Stack -2.50External closing pair is G 39-T 101
Helix -7.60 7 base pairs.
Multi-loop 1.80External closing pair is C 40-G 100
13 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 77-G 97
Stack -0.90External closing pair is A 78-T 96
Stack -1.40External closing pair is A 79-T 95
Helix -4.40 4 base pairs.
Interior loop 3.70External closing pair is T 80-G 94
Stack -2.20External closing pair is A 83-T 92
Stack -1.40External closing pair is C 84-G 91
Helix -3.60 3 base pairs.
Hairpin loop 4.50Closing pair is G 85-T 90
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 30
seq.txt
ΔG = -809.60

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 3.30External closing pair is T 384-G 2030
9 ss bases & 4 closing helices.
Stack -0.60External closing pair is T 1887-G 2026
Stack -2.40External closing pair is T 1888-A 2025
Stack -3.30External closing pair is C 1889-G 2024
Helix -6.30 4 base pairs.
Interior loop 0.30External closing pair is C 1890-G 2023
Stack -0.60External closing pair is A 1893-T 2020
Stack -1.30External closing pair is G 1894-T 2019
Helix -1.90 3 base pairs.
Multi-loop 0.70External closing pair is A 1895-T 2018
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1921-C 2016
Stack -2.40External closing pair is C 1922-G 2015
Stack -1.50External closing pair is G 1923-C 2014
Stack -1.40External closing pair is G 1924-T 2013
Stack -1.30External closing pair is T 1925-A 2012
Helix -10.00 6 base pairs.
Interior loop 1.70External closing pair is T 1926-G 2011
Stack -1.30External closing pair is T 1928-A 2009
Stack -0.60External closing pair is A 1929-T 2008
Stack -1.40External closing pair is G 1930-T 2007
Stack -1.30External closing pair is T 1931-A 2006
Stack -1.00External closing pair is T 1932-G 2005
Helix -5.60 6 base pairs.
Interior loop 4.70External closing pair is A 1933-T 2004
Stack -2.40External closing pair is G 1937-C 1995
Stack -0.90External closing pair is A 1938-T 1994
Helix -3.30 3 base pairs.
Interior loop 1.10External closing pair is A 1939-T 1993
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.20External closing pair is G 385-C 1869
Stack -0.90External closing pair is T 386-A 1868
Stack -2.10External closing pair is T 387-A 1867
Stack -2.40External closing pair is G 388-C 1866
Stack -2.20External closing pair is A 389-T 1865
Helix -9.80 6 base pairs.
Multi-loop 1.10External closing pair is C 390-G 1864
27 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1352-T 1860
Stack -2.10External closing pair is A 1353-T 1859
Stack -2.40External closing pair is G 1354-C 1858
Stack -1.10External closing pair is A 1355-T 1857
Helix -6.50 5 base pairs.
Bulge loop 2.90External closing pair is T 1356-A 1856
Stack -1.30External closing pair is T 1358-A 1855
Stack -1.40External closing pair is T 1359-G 1854
Stack -1.50External closing pair is G 1360-C 1853
Helix -4.20 4 base pairs.
Bulge loop 2.50External closing pair is G 1361-T 1852
Stack -0.90External closing pair is A 1363-T 1851
Stack -1.40External closing pair is A 1364-T 1850
Stack -1.50External closing pair is T 1365-G 1849
Stack -2.10External closing pair is C 1366-G 1848
Stack -2.40External closing pair is T 1367-A 1847
Stack -2.10External closing pair is C 1368-G 1846
Helix -10.40 7 base pairs.
Multi-loop 1.40External closing pair is A 1369-T 1845
29 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.30External closing pair is G 398-C 1334
Stack -2.20External closing pair is G 399-C 1333
Stack -1.30External closing pair is T 400-A 1332
Helix -6.80 4 base pairs.
Interior loop 3.90External closing pair is A 401-T 1331
Stack -1.30External closing pair is T 407-A 1325
Stack -0.90External closing pair is A 408-T 1324
Stack -0.60External closing pair is A 409-T 1323
Stack -1.40External closing pair is G 410-T 1322
Helix -4.20 5 base pairs.
Interior loop 2.60External closing pair is T 411-A 1321
Stack -2.10External closing pair is A 414-T 1317
Stack -2.40External closing pair is G 415-C 1316
Stack -2.10External closing pair is A 416-T 1315
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 417-C 1314
Stack -2.10External closing pair is C 419-G 1312
Stack -0.90External closing pair is A 420-T 1311
Stack -0.90External closing pair is A 421-T 1310
Stack -0.60External closing pair is A 422-T 1309
Helix -4.50 5 base pairs.
Bulge loop 2.50External closing pair is G 423-T 1308
Stack -1.10External closing pair is A 424-T 1306
Stack -1.30External closing pair is T 425-A 1305
Stack -2.20External closing pair is A 426-T 1304
Stack -3.30External closing pair is C 427-G 1303
Helix -7.90 5 base pairs.
Interior loop 3.40External closing pair is C 428-G 1302
Stack -2.10External closing pair is T 432-A 1300
Helix -2.10 2 base pairs.
Interior loop 3.00External closing pair is G 433-C 1299
Stack -1.30External closing pair is T 437-A 1296
Stack -2.10External closing pair is A 438-T 1295
Stack -2.20External closing pair is G 439-C 1294
Stack -1.00External closing pair is T 440-A 1293
Stack -1.40External closing pair is G 441-T 1292
Helix -8.00 6 base pairs.
Multi-loop 4.20External closing pair is T 442-A 1291
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1277-T 1287
Stack -2.50External closing pair is G 1278-C 1286
Helix -4.60 3 base pairs.
Hairpin loop 4.80Closing pair is T 1279-G 1285
Stack -2.10External closing pair is T 444-A 1270
Stack -2.40External closing pair is G 445-C 1269
Stack -0.90External closing pair is A 446-T 1268
Stack -0.90External closing pair is A 447-T 1267
Stack -0.90External closing pair is A 448-T 1266
Stack -2.20External closing pair is A 449-T 1265
Stack -1.40External closing pair is C 450-G 1264
Helix -10.80 8 base pairs.
Multi-loop 3.40External closing pair is G 451-T 1263
15 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1063-A 1252
Stack -2.10External closing pair is C 1064-G 1251
Helix -4.50 3 base pairs.
Bulge loop 3.30External closing pair is A 1065-T 1250
Stack -2.40External closing pair is G 1068-C 1249
Stack -0.90External closing pair is A 1069-T 1248
Stack -2.10External closing pair is A 1070-T 1247
Stack -3.40External closing pair is G 1071-C 1246
Helix -8.80 5 base pairs.
Interior loop 3.40External closing pair is C 1072-G 1245
Stack -2.10External closing pair is G 1074-T 1241
Stack -2.40External closing pair is G 1075-C 1240
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is A 1076-T 1239
Stack -1.30External closing pair is T 1080-A 1234
Stack -0.90External closing pair is A 1081-T 1233
Stack -2.20External closing pair is A 1082-T 1232
Helix -4.40 4 base pairs.
Multi-loop 2.20External closing pair is C 1083-G 1231
7 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1173-A 1227
Stack -3.40External closing pair is G 1174-C 1226
Helix -5.50 3 base pairs.
Bulge loop 3.60External closing pair is C 1175-G 1225
Stack -2.10External closing pair is C 1176-G 1220
Stack -1.50External closing pair is T 1177-G 1219
Stack -2.10External closing pair is C 1178-G 1218
Stack -2.10External closing pair is A 1179-T 1217
Stack -2.40External closing pair is G 1180-C 1216
Stack -0.90External closing pair is A 1181-T 1215
Helix -11.10 7 base pairs.
Bulge loop 4.90External closing pair is A 1182-T 1214
Stack -3.30External closing pair is C 1183-G 1207
Stack -2.10External closing pair is C 1184-G 1206
Stack -2.20External closing pair is A 1185-T 1205
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is C 1186-G 1204
Stack -2.40External closing pair is T 1085-A 1169
Stack -2.10External closing pair is C 1086-G 1168
Stack -1.10External closing pair is A 1087-T 1167
Stack -1.30External closing pair is T 1088-A 1166
Stack -1.50External closing pair is T 1089-G 1165
Helix -8.40 6 base pairs.
Multi-loop -0.60External closing pair is C 1090-G 1164
25 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 1132-C 1148
Stack -0.60External closing pair is T 1133-G 1147
Stack -2.10External closing pair is T 1134-A 1146
Stack -2.20External closing pair is G 1135-C 1145
Helix -7.40 5 base pairs.
Hairpin loop 5.90Closing pair is T 1136-A 1144
Stack -3.30External closing pair is C 1100-G 1130
Stack -2.40External closing pair is C 1101-G 1129
Stack -2.20External closing pair is G 1102-C 1128
Stack -2.40External closing pair is T 1103-A 1127
Helix -10.30 5 base pairs.
Interior loop 1.10External closing pair is C 1104-G 1126
Stack -2.40External closing pair is T 1106-A 1124
Helix -2.40 2 base pairs.
Interior loop 0.90External closing pair is C 1107-G 1123
Stack -2.10External closing pair is C 1111-G 1119
Stack -0.60External closing pair is A 1112-T 1118
Helix -2.70 3 base pairs.
Hairpin loop 6.20Closing pair is G 1113-T 1117
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 31
seq.txt
ΔG = -809.30

Structural elementδGInformation
External loop -0.40 5 ss bases & 2 closing helices.
Stack -0.90External closing pair is A 1837-T 3134
Stack -1.10External closing pair is A 1838-T 3133
Stack -1.30External closing pair is T 1839-A 3132
Stack -0.90External closing pair is A 1840-T 3131
Stack -1.10External closing pair is A 1841-T 3130
Helix -5.30 6 base pairs.
Interior loop 1.10External closing pair is T 1842-A 3129
Stack -2.10External closing pair is C 1844-G 3127
Stack -2.10External closing pair is T 1845-A 3126
Stack -2.40External closing pair is G 1846-C 3125
Stack -2.10External closing pair is A 1847-T 3124
Stack -3.30External closing pair is G 1848-C 3123
Stack -2.20External closing pair is G 1849-C 3122
Stack -0.90External closing pair is T 1850-A 3121
Stack -0.90External closing pair is T 1851-A 3120
Helix -16.00 9 base pairs.
Multi-loop 4.60External closing pair is T 1852-A 3119
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1857-A 2665
Stack -2.10External closing pair is C 1858-G 2664
Stack -0.90External closing pair is T 1859-A 2663
Stack -2.10External closing pair is T 1860-A 2662
Helix -7.50 5 base pairs.
Multi-loop 1.40External closing pair is G 1861-C 2661
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.50External closing pair is G 1864-C 1943
Stack -1.50External closing pair is T 1865-G 1942
Helix -4.00 3 base pairs.
Multi-loop 0.30External closing pair is C 1866-G 1941
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1939
Stack -2.40External closing pair is T 1888-A 1938
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 1889-G 1937
Stack -2.10External closing pair is C 1890-G 1935
Stack -0.60External closing pair is T 1891-G 1934
Stack -1.30External closing pair is T 1892-A 1933
Stack -0.60External closing pair is A 1893-T 1932
Helix -4.60 5 base pairs.
Interior loop 0.50External closing pair is G 1894-T 1931
Stack -0.90External closing pair is A 1897-T 1928
Stack -0.90External closing pair is A 1898-T 1927
Stack -0.90External closing pair is A 1899-T 1926
Helix -2.70 4 base pairs.
Interior loop 1.60External closing pair is A 1900-T 1925
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -1.10External closing pair is A 1-T 1835
Stack -2.10External closing pair is T 2-A 1834
Helix -3.20 3 base pairs.
Bulge loop 1.60External closing pair is G 3-C 1833
Stack -2.40External closing pair is T 4-A 1831
Helix -2.40 2 base pairs.
Multi-loop 0.30External closing pair is C 5-G 1830
19 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 418-G 1813
Stack -2.10External closing pair is C 419-G 1812
Helix -5.40 3 base pairs.
Bulge loop 2.90External closing pair is A 420-T 1811
Stack -0.90External closing pair is A 421-T 1809
Stack -2.10External closing pair is A 422-T 1808
Helix -3.00 3 base pairs.
Interior loop 2.30External closing pair is G 423-C 1807
Stack -3.30External closing pair is C 427-G 1804
Stack -2.10External closing pair is C 428-G 1803
Helix -5.40 3 base pairs.
Bulge loop 1.60External closing pair is A 429-T 1802
Stack -2.10External closing pair is C 431-G 1801
Stack -1.00External closing pair is T 432-A 1800
Stack -1.30External closing pair is G 433-T 1799
Stack -0.90External closing pair is A 434-T 1798
Helix -5.30 5 base pairs.
Multi-loop 3.60External closing pair is A 435-T 1797
9 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1117-A 1795
Stack -1.40External closing pair is T 1118-G 1794
Stack -1.50External closing pair is G 1119-C 1793
Helix -4.20 4 base pairs.
Interior loop 1.70External closing pair is G 1120-T 1792
Stack -0.60External closing pair is A 1122-T 1790
Stack -1.30External closing pair is G 1123-T 1789
Stack -2.10External closing pair is A 1124-T 1788
Stack -3.30External closing pair is G 1125-C 1787
Stack -2.40External closing pair is G 1126-C 1786
Stack -2.20External closing pair is A 1127-T 1785
Stack -2.40External closing pair is C 1128-G 1784
Stack -3.30External closing pair is G 1129-C 1783
Stack -2.40External closing pair is G 1130-C 1782
Helix -20.00 10 base pairs.
Multi-loop 1.90External closing pair is A 1131-T 1781
4 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1206-C 1778
Stack -3.40External closing pair is G 1207-C 1777
Stack -2.10External closing pair is C 1208-G 1776
Helix -8.80 4 base pairs.
Interior loop 3.30External closing pair is T 1209-A 1775
Stack -1.30External closing pair is T 1214-A 1772
Stack -1.50External closing pair is T 1215-G 1771
Stack -2.10External closing pair is C 1216-G 1770
Stack -2.10External closing pair is T 1217-A 1769
Stack -3.30External closing pair is G 1218-C 1768
Stack -3.30External closing pair is G 1219-C 1767
Stack -2.40External closing pair is G 1220-C 1766
Stack -0.90External closing pair is A 1221-T 1765
Helix -16.90 9 base pairs.
Multi-loop 2.10External closing pair is A 1222-T 1764
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1762
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 1752-G 1761
Stack -3.40External closing pair is G 1225-C 1749
Stack -2.10External closing pair is C 1226-G 1748
Stack -1.10External closing pair is A 1227-T 1747
Helix -6.60 4 base pairs.
Interior loop 0.60External closing pair is T 1228-A 1746
Stack -2.20External closing pair is G 1231-C 1743
Stack -0.90External closing pair is T 1232-A 1742
Stack -1.30External closing pair is T 1233-A 1741
Helix -4.40 4 base pairs.
Multi-loop 3.50External closing pair is A 1234-T 1740
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.40External closing pair is G 1238-T 1713
Stack -2.40External closing pair is T 1239-A 1712
Stack -2.10External closing pair is C 1240-G 1711
Stack -0.90External closing pair is T 1241-A 1710
Stack -0.90External closing pair is T 1242-A 1709
Stack -1.30External closing pair is T 1243-A 1708
Stack -1.40External closing pair is T 1244-G 1707
Stack -3.40External closing pair is G 1245-C 1706
Helix -13.80 9 base pairs.
Multi-loop 2.40External closing pair is C 1246-G 1705
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1292-G 1701
Stack -2.20External closing pair is A 1293-T 1700
Stack -2.10External closing pair is C 1294-G 1699
Helix -5.30 4 base pairs.
Multi-loop 1.80External closing pair is T 1295-A 1698
18 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.40External closing pair is T 1248-A 1274
Stack -2.10External closing pair is C 1249-G 1273
Stack -2.10External closing pair is T 1250-A 1272
Helix -6.60 4 base pairs.
Interior loop 3.40External closing pair is G 1251-C 1271
Stack -0.90External closing pair is A 1255-T 1266
Stack -2.20External closing pair is A 1256-T 1265
Helix -3.10 3 base pairs.
Hairpin loop 4.60Closing pair is C 1257-G 1264
Stack -2.20External closing pair is G 1132-C 1203
Stack -0.90External closing pair is T 1133-A 1202
Stack -1.00External closing pair is T 1134-A 1201
Helix -4.10 4 base pairs.
Multi-loop 3.10External closing pair is G 1135-T 1200
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1147-C 1175
Stack -2.10External closing pair is C 1148-G 1174
Stack -2.10External closing pair is A 1149-T 1173
Helix -7.60 4 base pairs.
Interior loop 3.00External closing pair is G 1150-C 1172
Stack -1.30External closing pair is T 1154-A 1169
Stack -1.00External closing pair is T 1155-G 1168
Stack -1.10External closing pair is A 1156-T 1167
Helix -3.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1157-A 1166
Stack -2.10External closing pair is T 440-A 1112
Stack -2.20External closing pair is G 441-C 1111
Stack -2.40External closing pair is T 442-A 1110
Stack -2.10External closing pair is C 443-G 1109
Stack -2.10External closing pair is T 444-A 1108
Stack -2.40External closing pair is G 445-C 1107
Helix -13.30 7 base pairs.
Interior loop 2.30External closing pair is A 446-T 1106
Stack -2.20External closing pair is A 449-T 1103
Stack -2.40External closing pair is C 450-G 1102
Stack -3.30External closing pair is G 451-C 1101
Helix -7.90 4 base pairs.
Multi-loop 2.40External closing pair is G 452-C 1100
9 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.10External closing pair is C 7-G 415
Stack -0.90External closing pair is T 8-A 414
Stack -2.40External closing pair is T 9-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 10-G 412
Stack -2.10External closing pair is C 12-G 410
Stack -0.90External closing pair is T 13-A 409
Stack -1.30External closing pair is T 14-A 408
Stack -0.90External closing pair is A 15-T 407
Helix -5.20 5 base pairs.
Interior loop 5.60External closing pair is A 16-T 406
Stack -2.10External closing pair is A 24-T 403
Stack -2.20External closing pair is G 25-C 402
Stack -1.30External closing pair is T 26-A 401
Stack -2.20External closing pair is A 27-T 400
Helix -7.80 5 base pairs.
Bulge loop 3.30External closing pair is C 28-G 399
Stack -0.60External closing pair is T 31-G 398
Stack -2.10External closing pair is T 32-A 397
Stack -3.30External closing pair is G 33-C 396
Stack -2.20External closing pair is G 34-C 395
Stack -1.30External closing pair is T 35-A 394
Helix -9.50 6 base pairs.
Multi-loop 2.80External closing pair is A 36-T 393
39 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 83-T 374
Stack -2.40External closing pair is C 84-G 373
Stack -2.20External closing pair is G 85-C 372
Stack -2.40External closing pair is T 86-A 371
Stack -2.10External closing pair is C 87-G 370
Stack -1.10External closing pair is A 88-T 369
Stack -1.30External closing pair is T 89-A 368
Helix -13.70 8 base pairs.
Multi-loop 2.90External closing pair is T 90-G 367
8 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 201-C 359
Helix -3.30 2 base pairs.
Interior loop 1.70External closing pair is G 202-C 358
Stack -1.30External closing pair is G 205-T 355
Stack -2.10External closing pair is A 206-T 354
Stack -2.20External closing pair is G 207-C 353
Stack -1.30External closing pair is T 208-A 352
Stack -1.40External closing pair is T 209-G 351
Stack -2.20External closing pair is G 210-C 350
Stack -0.90External closing pair is T 211-A 349
Helix -11.40 8 base pairs.
Bulge loop 1.70External closing pair is T 212-A 348
Stack -2.40External closing pair is G 214-C 347
Stack -0.90External closing pair is A 215-T 346
Helix -3.30 3 base pairs.
Multi-loop 0.70External closing pair is A 216-T 345
35 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 298-G 340
Stack -2.10External closing pair is C 299-G 339
Stack -0.90External closing pair is T 300-A 338
Helix -6.30 4 base pairs.
Interior loop 3.10External closing pair is T 301-A 337
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -3.30External closing pair is G 236-C 285
Stack -2.50External closing pair is G 237-C 284
Helix -5.80 3 base pairs.
Multi-loop 3.70External closing pair is T 238-G 283
11 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 269-C 281
Stack -2.10External closing pair is C 270-G 280
Helix -5.50 3 base pairs.
Bulge loop 1.40External closing pair is T 271-A 279
Hairpin loop 3.90Closing pair is C 272-G 277
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.50External closing pair is G 91-C 199
Stack -0.60External closing pair is T 92-G 198
Helix -3.10 3 base pairs.
Interior loop 1.90External closing pair is T 93-A 197
Stack -2.10External closing pair is T 96-A 193
Stack -3.40External closing pair is G 97-C 192
Stack -2.10External closing pair is C 98-G 191
Helix -7.60 4 base pairs.
Multi-loop 3.00External closing pair is T 99-A 190
15 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 32
seq.txt
ΔG = -809.10

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 1.50External closing pair is T 211-A 1912
61 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1844-G 1894
Stack -1.00External closing pair is T 1845-A 1893
Stack -1.30External closing pair is G 1846-T 1892
Stack -2.10External closing pair is A 1847-T 1891
Stack -3.30External closing pair is G 1848-C 1890
Helix -9.80 6 base pairs.
Multi-loop 1.20External closing pair is G 1849-C 1889
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is C 1853-G 1864
Stack -2.40External closing pair is G 1854-C 1863
Helix -4.80 3 base pairs.
Hairpin loop 5.10Closing pair is A 1855-T 1862
Stack -2.10External closing pair is C 228-G 1815
Helix -2.10 2 base pairs.
Bulge loop 1.40External closing pair is T 229-A 1814
Stack -2.10External closing pair is C 231-G 1813
Stack -1.00External closing pair is T 232-G 1812
Stack -1.10External closing pair is A 233-T 1811
Stack -1.30External closing pair is T 234-A 1810
Stack -0.60External closing pair is A 235-T 1809
Stack -2.10External closing pair is G 236-T 1808
Stack -2.20External closing pair is G 237-C 1807
Helix -10.40 8 base pairs.
Bulge loop 2.90External closing pair is T 238-A 1806
Stack -2.40External closing pair is T 240-A 1805
Stack -3.30External closing pair is C 241-G 1804
Helix -5.70 3 base pairs.
Multi-loop 2.70External closing pair is C 242-G 1803
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1116-A 1796
Stack -1.30External closing pair is T 1117-A 1795
Stack -1.40External closing pair is T 1118-G 1794
Stack -1.50External closing pair is G 1119-C 1793
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is G 1120-T 1792
Stack -0.60External closing pair is A 1122-T 1790
Stack -1.30External closing pair is G 1123-T 1789
Stack -2.10External closing pair is A 1124-T 1788
Stack -3.30External closing pair is G 1125-C 1787
Stack -2.40External closing pair is G 1126-C 1786
Stack -2.20External closing pair is A 1127-T 1785
Stack -2.40External closing pair is C 1128-G 1784
Stack -3.30External closing pair is G 1129-C 1783
Stack -2.40External closing pair is G 1130-C 1782
Helix -20.00 10 base pairs.
Multi-loop 1.90External closing pair is A 1131-T 1781
4 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1206-C 1778
Stack -3.40External closing pair is G 1207-C 1777
Stack -2.10External closing pair is C 1208-G 1776
Helix -8.80 4 base pairs.
Interior loop 3.30External closing pair is T 1209-A 1775
Stack -1.30External closing pair is T 1214-A 1772
Stack -1.50External closing pair is T 1215-G 1771
Stack -2.10External closing pair is C 1216-G 1770
Stack -2.10External closing pair is T 1217-A 1769
Stack -3.30External closing pair is G 1218-C 1768
Stack -3.30External closing pair is G 1219-C 1767
Stack -2.40External closing pair is G 1220-C 1766
Stack -0.90External closing pair is A 1221-T 1765
Helix -16.90 9 base pairs.
Multi-loop 2.10External closing pair is A 1222-T 1764
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1762
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 1752-G 1761
Stack -3.40External closing pair is G 1225-C 1749
Stack -2.10External closing pair is C 1226-G 1748
Stack -1.10External closing pair is A 1227-T 1747
Helix -6.60 4 base pairs.
Interior loop 0.60External closing pair is T 1228-A 1746
Stack -2.20External closing pair is G 1231-C 1743
Stack -0.90External closing pair is T 1232-A 1742
Stack -1.30External closing pair is T 1233-A 1741
Helix -4.40 4 base pairs.
Multi-loop 3.50External closing pair is A 1234-T 1740
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.40External closing pair is G 1238-T 1713
Stack -2.40External closing pair is T 1239-A 1712
Stack -2.10External closing pair is C 1240-G 1711
Stack -0.90External closing pair is T 1241-A 1710
Stack -0.90External closing pair is T 1242-A 1709
Stack -1.30External closing pair is T 1243-A 1708
Stack -1.40External closing pair is T 1244-G 1707
Stack -3.40External closing pair is G 1245-C 1706
Helix -13.80 9 base pairs.
Multi-loop 2.40External closing pair is C 1246-G 1705
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1292-G 1701
Stack -2.20External closing pair is A 1293-T 1700
Stack -2.10External closing pair is C 1294-G 1699
Helix -5.30 4 base pairs.
Multi-loop 1.80External closing pair is T 1295-A 1698
18 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.40External closing pair is T 1248-A 1274
Stack -2.10External closing pair is C 1249-G 1273
Stack -2.10External closing pair is T 1250-A 1272
Helix -6.60 4 base pairs.
Interior loop 3.40External closing pair is G 1251-C 1271
Stack -0.90External closing pair is A 1255-T 1266
Stack -2.20External closing pair is A 1256-T 1265
Helix -3.10 3 base pairs.
Hairpin loop 4.60Closing pair is C 1257-G 1264
Stack -2.20External closing pair is G 1132-C 1203
Stack -0.90External closing pair is T 1133-A 1202
Stack -1.00External closing pair is T 1134-A 1201
Helix -4.10 4 base pairs.
Multi-loop 3.10External closing pair is G 1135-T 1200
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1147-C 1175
Stack -2.10External closing pair is C 1148-G 1174
Stack -2.10External closing pair is A 1149-T 1173
Helix -7.60 4 base pairs.
Interior loop 3.00External closing pair is G 1150-C 1172
Stack -1.30External closing pair is T 1154-A 1169
Stack -1.00External closing pair is T 1155-G 1168
Stack -1.10External closing pair is A 1156-T 1167
Helix -3.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1157-A 1166
Stack -2.10External closing pair is T 245-A 1112
Stack -2.20External closing pair is G 246-C 1111
Stack -2.40External closing pair is T 247-A 1110
Stack -2.10External closing pair is C 248-G 1109
Stack -2.10External closing pair is T 249-A 1108
Stack -2.40External closing pair is G 250-C 1107
Stack -1.10External closing pair is A 251-T 1106
Helix -14.40 8 base pairs.
Interior loop 3.70External closing pair is T 252-A 1105
Stack -1.40External closing pair is A 255-T 1103
Stack -1.40External closing pair is T 256-G 1102
Stack -3.30External closing pair is G 257-C 1101
Helix -6.10 4 base pairs.
Multi-loop 1.00External closing pair is G 258-C 1100
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1085-A 1095
Helix -2.40 2 base pairs.
Hairpin loop 4.40Closing pair is C 1086-G 1094
Stack -2.20External closing pair is G 261-C 1083
Stack -0.90External closing pair is T 262-A 1082
Stack -1.30External closing pair is T 263-A 1081
Helix -4.40 4 base pairs.
Interior loop 4.70External closing pair is A 264-T 1080
Stack -1.50External closing pair is T 266-G 1075
Stack -2.10External closing pair is C 267-G 1074
Stack -2.10External closing pair is A 268-T 1073
Stack -3.40External closing pair is G 269-C 1072
Stack -2.10External closing pair is C 270-G 1071
Helix -11.20 6 base pairs.
Interior loop 1.70External closing pair is T 271-A 1070
Stack -1.00External closing pair is T 273-G 1068
Helix -1.00 2 base pairs.
Interior loop 2.00External closing pair is A 274-T 1067
Stack -2.40External closing pair is G 277-C 1064
Helix -2.40 2 base pairs.
Multi-loop 2.50External closing pair is A 278-T 1063
9 ss bases & 3 closing helices.
Stack -1.30External closing pair is G 456-T 1061
Stack -0.90External closing pair is A 457-T 1060
Stack -0.90External closing pair is A 458-T 1059
Stack -1.10External closing pair is A 459-T 1058
Stack -2.10External closing pair is T 460-A 1057
Stack -3.30External closing pair is G 461-C 1056
Helix -9.60 7 base pairs.
Bulge loop 1.40External closing pair is G 462-C 1055
Stack -2.10External closing pair is A 463-T 1053
Stack -2.40External closing pair is G 464-C 1052
Helix -4.50 3 base pairs.
Interior loop 1.20External closing pair is A 465-T 1051
Stack -1.00External closing pair is T 467-A 1049
Stack -1.30External closing pair is G 468-T 1048
Stack -0.60External closing pair is A 469-T 1047
Stack -1.30External closing pair is G 470-T 1046
Stack -0.90External closing pair is A 471-T 1045
Helix -5.10 6 base pairs.
Bulge loop 5.60External closing pair is A 472-T 1044
Stack -2.20External closing pair is A 473-T 1036
Stack -2.10External closing pair is C 474-G 1035
Stack -0.90External closing pair is A 475-T 1034
Helix -5.20 4 base pairs.
Interior loop 1.70External closing pair is A 476-T 1033
Stack -2.10External closing pair is A 478-T 1031
Stack -3.40External closing pair is G 479-C 1030
Stack -2.10External closing pair is C 480-G 1029
Stack -0.90External closing pair is A 481-T 1028
Helix -8.50 5 base pairs.
Interior loop 1.70External closing pair is A 482-T 1027
Stack -1.30External closing pair is T 484-A 1025
Helix -1.30 2 base pairs.
Interior loop 5.00External closing pair is T 485-G 1024
Stack -0.50External closing pair is G 492-T 1021
Stack -1.30External closing pair is G 493-T 1020
Stack -2.20External closing pair is A 494-T 1019
Helix -4.00 4 base pairs.
Interior loop 0.30External closing pair is C 495-G 1018
Stack -3.40External closing pair is G 498-C 1015
Stack -2.10External closing pair is C 499-G 1014
Stack -1.10External closing pair is A 500-T 1013
Stack -1.30External closing pair is T 501-A 1012
Stack -0.90External closing pair is A 502-T 1011
Helix -8.80 6 base pairs.
Multi-loop 3.80External closing pair is A 503-T 1010
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 536-T 1003
Stack -2.10External closing pair is C 537-G 1002
Stack -0.90External closing pair is A 538-T 1001
Stack -0.90External closing pair is A 539-T 1000
Stack -0.90External closing pair is A 540-T 999
Helix -7.00 6 base pairs.
Interior loop 4.10External closing pair is A 541-T 998
Stack -2.50External closing pair is G 545-T 996
Helix -2.50 2 base pairs.
Bulge loop 1.40External closing pair is C 546-G 995
Stack -2.40External closing pair is G 547-C 993
Stack -0.90External closing pair is A 548-T 992
Helix -3.30 3 base pairs.
Interior loop 1.20External closing pair is A 549-T 991
Stack -0.90External closing pair is T 551-A 989
Stack -2.10External closing pair is T 552-A 988
Stack -2.40External closing pair is G 553-C 987
Stack -1.40External closing pair is A 554-T 986
Stack -1.50External closing pair is T 555-G 985
Stack -2.10External closing pair is C 556-G 984
Stack -0.60External closing pair is A 557-T 983
Stack -1.40External closing pair is G 558-T 982
Stack -1.30External closing pair is T 559-A 981
Stack -1.50External closing pair is T 560-G 980
Stack -2.40External closing pair is C 561-G 979
Helix -17.60 12 base pairs.
Interior loop 3.90External closing pair is G 562-C 978
Stack -2.10External closing pair is T 566-A 971
Stack -2.20External closing pair is G 567-C 970
Stack -1.30External closing pair is T 568-A 969
Stack -0.60External closing pair is T 569-G 968
Stack -1.30External closing pair is T 570-A 967
Helix -7.50 6 base pairs.
Interior loop 1.10External closing pair is A 571-T 966
Stack -2.10External closing pair is C 573-G 964
Stack -1.10External closing pair is A 574-T 963
Helix -3.20 3 base pairs.
Interior loop 3.70External closing pair is T 575-A 962
Stack -1.30External closing pair is T 578-A 958
Stack -2.10External closing pair is A 579-T 957
Stack -3.40External closing pair is G 580-C 956
Helix -6.80 4 base pairs.
Multi-loop 2.20External closing pair is C 581-G 955
2 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -13.20 7 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -3.30External closing pair is C 284-G 452
Stack -2.40External closing pair is C 285-G 451
Helix -5.70 3 base pairs.
Multi-loop 1.80External closing pair is G 286-C 450
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 33
seq.txt
ΔG = -808.70

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Interior loop 3.30External closing pair is G 67-C 2934
Stack -2.40External closing pair is G 69-C 2929
Stack -2.10External closing pair is A 70-T 2928
Helix -4.50 3 base pairs.
Interior loop 3.00External closing pair is G 71-C 2927
Stack -3.30External closing pair is C 76-G 2924
Stack -2.10External closing pair is C 77-G 2923
Helix -5.40 3 base pairs.
Interior loop 3.00External closing pair is A 78-T 2922
Stack -2.20External closing pair is A 83-T 2918
Stack -2.40External closing pair is C 84-G 2917
Stack -2.50External closing pair is G 85-C 2916
Stack -1.50External closing pair is T 86-G 2915
Helix -8.60 5 base pairs.
Multi-loop 2.60External closing pair is C 87-G 2914
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 883-C 2913
Stack -2.10External closing pair is A 884-T 2912
Stack -1.50External closing pair is G 885-C 2911
Helix -6.00 4 base pairs.
Interior loop 5.20External closing pair is G 886-T 2910
Stack -2.40External closing pair is T 894-A 2906
Stack -2.10External closing pair is C 895-G 2905
Stack -0.90External closing pair is A 896-T 2904
Stack -2.10External closing pair is A 897-T 2903
Helix -7.50 5 base pairs.
Interior loop 1.20External closing pair is G 898-C 2902
Stack -3.30External closing pair is G 901-C 2898
Stack -2.50External closing pair is G 902-C 2897
Stack -1.40External closing pair is T 903-G 2896
Stack -3.40External closing pair is G 904-C 2895
Stack -3.30External closing pair is C 905-G 2894
Stack -2.10External closing pair is C 906-G 2893
Helix -16.00 7 base pairs.
Interior loop 3.00External closing pair is T 907-G 2892
Stack -2.40External closing pair is T 914-A 2885
Stack -3.30External closing pair is C 915-G 2884
Stack -1.40External closing pair is C 916-G 2883
Helix -7.10 4 base pairs.
Interior loop 1.70External closing pair is G 917-T 2882
Stack -1.30External closing pair is G 919-T 2880
Stack -2.20External closing pair is A 920-T 2879
Helix -3.50 3 base pairs.
Multi-loop 1.40External closing pair is C 921-G 2878
6 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 2827-T 2874
Stack -1.50External closing pair is T 2828-G 2873
Stack -2.10External closing pair is C 2829-G 2872
Stack -1.50External closing pair is T 2830-G 2871
Stack -2.10External closing pair is C 2831-G 2870
Stack -1.40External closing pair is T 2832-G 2869
Stack -2.50External closing pair is G 2833-C 2868
Stack -0.50External closing pair is T 2834-G 2867
Helix -13.00 9 base pairs.
Interior loop 3.60External closing pair is T 2835-G 2866
Stack -1.00External closing pair is T 2840-A 2860
Stack -2.50External closing pair is G 2841-T 2859
Stack -3.30External closing pair is C 2842-G 2858
Stack -2.10External closing pair is C 2843-G 2857
Helix -8.90 5 base pairs.
Interior loop 1.00External closing pair is A 2844-T 2856
Stack -2.10External closing pair is C 2846-G 2854
Helix -2.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 2847-A 2853
Stack -2.10External closing pair is C 924-G 2825
Stack -0.90External closing pair is T 925-A 2824
Stack -1.30External closing pair is T 926-A 2823
Helix -4.30 4 base pairs.
Interior loop 0.60External closing pair is A 927-T 2822
Stack -1.30External closing pair is T 930-A 2819
Stack -1.00External closing pair is T 931-G 2818
Stack -1.40External closing pair is A 932-T 2817
Helix -3.70 4 base pairs.
Bulge loop 2.80External closing pair is T 933-G 2816
Stack -1.10External closing pair is A 934-T 2814
Stack -1.30External closing pair is T 935-A 2813
Stack -1.00External closing pair is T 936-G 2812
Stack -0.60External closing pair is A 937-T 2811
Stack -2.50External closing pair is G 938-T 2810
Stack -2.10External closing pair is C 939-G 2809
Helix -8.60 7 base pairs.
Bulge loop 1.40External closing pair is T 940-A 2808
Stack -3.30External closing pair is C 941-G 2806
Stack -2.10External closing pair is C 942-G 2805
Stack -0.90External closing pair is T 943-A 2804
Stack -2.40External closing pair is T 944-A 2803
Stack -2.10External closing pair is C 945-G 2802
Stack -1.10External closing pair is A 946-T 2801
Helix -11.90 7 base pairs.
Interior loop -2.90External closing pair is T 947-A 2800
Stack -1.30External closing pair is G 950-T 2797
Helix -1.30 2 base pairs.
Bulge loop 3.80External closing pair is A 951-T 2796
Stack -1.00External closing pair is T 952-A 2793
Stack -1.40External closing pair is G 953-T 2792
Stack -1.00External closing pair is T 954-A 2791
Stack -2.50External closing pair is G 955-T 2790
Helix -5.90 5 base pairs.
Multi-loop 2.90External closing pair is C 956-G 2789
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 1019-G 2780
Stack -0.90External closing pair is T 1020-A 2779
Stack -0.90External closing pair is T 1021-A 2778
Stack -2.40External closing pair is T 1022-A 2777
Stack -2.40External closing pair is C 1023-G 2776
Stack -2.40External closing pair is G 1024-C 2775
Stack -2.20External closing pair is A 1025-T 2774
Helix -11.80 8 base pairs.
Multi-loop 0.60External closing pair is C 1026-G 2773
27 ss bases & 4 closing helices.
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -1.10External closing pair is A 958-T 1013
Helix -1.10 2 base pairs.
Interior loop 1.10External closing pair is T 959-A 1012
Stack -1.10External closing pair is A 962-T 1009
Stack -2.10External closing pair is T 963-A 1008
Helix -3.20 3 base pairs.
Bulge loop 1.60External closing pair is G 964-C 1007
Stack -1.30External closing pair is T 966-A 1006
Stack -2.10External closing pair is A 967-T 1005
Stack -2.40External closing pair is G 968-C 1004
Stack -2.20External closing pair is A 969-T 1003
Stack -2.10External closing pair is C 970-G 1002
Helix -10.10 6 base pairs.
Interior loop 3.10External closing pair is A 971-T 1001
Stack -1.40External closing pair is C 978-G 995
Stack -2.10External closing pair is G 979-T 994
Stack -2.40External closing pair is G 980-C 993
Helix -5.90 4 base pairs.
Hairpin loop 5.40Closing pair is A 981-T 992
Stack -2.10External closing pair is T 90-A 874
Stack -2.20External closing pair is G 91-C 873
Stack -0.90External closing pair is T 92-A 872
Stack -2.10External closing pair is T 93-A 871
Helix -7.30 5 base pairs.
Bulge loop 1.60External closing pair is G 94-C 870
Stack -0.90External closing pair is T 95-A 868
Stack -1.00External closing pair is T 96-A 867
Stack -2.50External closing pair is G 97-T 866
Stack -2.10External closing pair is C 98-G 865
Stack -1.40External closing pair is T 99-G 864
Stack -2.20External closing pair is G 100-C 863
Stack -0.90External closing pair is T 101-A 862
Helix -11.00 8 base pairs.
Multi-loop 4.80External closing pair is T 102-A 861
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 0.50External closing pair is C 116-G 811
7 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 162-C 805
Stack -1.30External closing pair is G 163-T 804
Stack -2.20External closing pair is A 164-T 803
Stack -2.10External closing pair is C 165-G 802
Helix -7.10 5 base pairs.
Multi-loop 2.90External closing pair is T 166-A 801
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 191-C 796
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 192-G 795
Stack -1.30External closing pair is T 194-A 793
Stack -0.90External closing pair is A 195-T 792
Stack -0.90External closing pair is A 196-T 791
Stack -2.10External closing pair is A 197-T 790
Stack -3.40External closing pair is G 198-C 789
Stack -3.30External closing pair is C 199-G 788
Helix -11.90 7 base pairs.
Bulge loop 2.40External closing pair is C 200-G 787
Stack -1.30External closing pair is G 202-T 786
Stack -1.10External closing pair is A 203-T 785
Stack -1.00External closing pair is T 204-A 784
Stack -1.30External closing pair is G 205-T 783
Helix -4.70 5 base pairs.
Multi-loop 3.30External closing pair is A 206-T 782
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 227-T 779
Stack -2.10External closing pair is C 228-G 778
Stack -1.30External closing pair is T 229-A 777
Stack -2.20External closing pair is A 230-T 776
Helix -7.80 5 base pairs.
Multi-loop 3.20External closing pair is C 231-G 775
5 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 250-C 774
Stack -1.10External closing pair is A 251-T 773
Stack -1.30External closing pair is T 252-A 772
Helix -4.80 4 base pairs.
Interior loop 1.70External closing pair is A 253-T 771
Stack -1.10External closing pair is A 255-T 769
Stack -2.10External closing pair is T 256-A 768
Stack -3.30External closing pair is G 257-C 767
Helix -6.50 4 base pairs.
Interior loop 1.10External closing pair is G 258-C 766
Stack -2.10External closing pair is A 260-T 764
Stack -2.20External closing pair is G 261-C 763
Stack -1.30External closing pair is T 262-A 762
Helix -5.60 4 base pairs.
Bulge loop 5.00External closing pair is T 263-G 761
Stack -2.20External closing pair is A 264-T 755
Stack -2.10External closing pair is C 265-G 754
Helix -4.30 3 base pairs.
Interior loop 1.70External closing pair is T 266-G 753
Stack -0.60External closing pair is A 268-T 751
Stack -2.50External closing pair is G 269-T 750
Stack -2.10External closing pair is C 270-G 749
Helix -5.20 4 base pairs.
Interior loop 4.10External closing pair is T 271-A 748
Stack -1.30External closing pair is T 273-A 744
Stack -0.90External closing pair is A 274-T 743
Helix -2.20 3 base pairs.
Interior loop 1.10External closing pair is A 275-T 742
Stack -2.40External closing pair is G 277-C 740
Stack -0.90External closing pair is A 278-T 739
Stack -2.10External closing pair is A 279-T 738
Stack -3.40External closing pair is G 280-C 737
Stack -3.30External closing pair is C 281-G 736
Stack -2.40External closing pair is C 282-G 735
Helix -14.50 7 base pairs.
Multi-loop 1.90External closing pair is G 283-C 734
23 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 345-A 728
Stack -2.40External closing pair is T 346-A 727
Stack -2.10External closing pair is C 347-G 726
Stack -0.90External closing pair is A 348-T 725
Helix -6.30 5 base pairs.
Multi-loop 2.80External closing pair is A 349-T 724
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 429-T 721
Stack -2.20External closing pair is A 430-T 720
Stack -2.10External closing pair is C 431-G 719
Stack -2.10External closing pair is T 432-A 718
Helix -7.30 5 base pairs.
Multi-loop 2.00External closing pair is G 433-C 717
6 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 630-C 715
Stack -2.10External closing pair is A 631-T 714
Helix -4.50 3 base pairs.
Multi-loop 2.30External closing pair is G 632-C 713
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -1.40External closing pair is G 439-T 629
Stack -2.10External closing pair is T 440-A 628
Stack -2.20External closing pair is G 441-C 627
Stack -2.40External closing pair is T 442-A 626
Helix -8.10 5 base pairs.
Interior loop 2.00External closing pair is C 443-G 625
Stack -0.90External closing pair is A 447-T 621
Stack -0.90External closing pair is A 448-T 620
Stack -2.20External closing pair is A 449-T 619
Stack -1.40External closing pair is C 450-G 618
Stack -2.10External closing pair is G 451-T 617
Helix -7.50 6 base pairs.
Interior loop 3.30External closing pair is G 452-C 616
Stack -0.90External closing pair is A 458-T 613
Stack -1.40External closing pair is A 459-T 612
Stack 0.30External closing pair is T 460-G 611
Stack -2.10External closing pair is G 461-T 610
Stack -2.40External closing pair is G 462-C 609
Stack -2.10External closing pair is A 463-T 608
Stack -2.40External closing pair is G 464-C 607
Helix -11.00 8 base pairs.
Interior loop 4.10External closing pair is A 465-T 606
Stack -1.00External closing pair is T 467-A 602
Stack -1.30External closing pair is G 468-T 601
Stack -0.60External closing pair is A 469-T 600
Stack -1.30External closing pair is G 470-T 599
Stack -0.90External closing pair is A 471-T 598
Stack -0.90External closing pair is A 472-T 597
Helix -6.00 7 base pairs.
Multi-loop 3.00External closing pair is A 473-T 596
19 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 519-C 589
Stack -2.20External closing pair is G 520-C 588
Stack -1.00External closing pair is T 521-A 587
Stack -1.30External closing pair is G 522-T 586
Helix -7.80 5 base pairs.
Bulge loop 3.80External closing pair is A 523-T 585
Stack -2.10External closing pair is A 524-T 582
Stack -3.40External closing pair is G 525-C 581
Helix -5.50 3 base pairs.
Interior loop 4.10External closing pair is C 526-G 580
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 486-A 517
Stack -1.10External closing pair is A 487-T 516
Stack -0.90External closing pair is T 488-A 515
Stack -0.90External closing pair is T 489-A 514
Stack -1.30External closing pair is T 490-A 513
Stack -1.40External closing pair is T 491-G 512
Stack -3.30External closing pair is G 492-C 511
Helix -10.20 8 base pairs.
Hairpin loop 5.90Closing pair is G 493-C 510
Stack -2.10External closing pair is C 353-G 423
Stack -0.90External closing pair is T 354-A 422
Stack -0.90External closing pair is T 355-A 421
Stack -2.10External closing pair is T 356-A 420
Helix -6.00 5 base pairs.
Bulge loop 0.40External closing pair is G 357-C 419
Bulge loop 0.50External closing pair is C 358-G 417
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.30External closing pair is C 298-G 340
Stack -2.10External closing pair is C 299-G 339
Stack -0.90External closing pair is T 300-A 338
Helix -6.30 4 base pairs.
Interior loop 3.10External closing pair is T 301-A 337
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -1.40External closing pair is A 233-T 245
Stack -1.00External closing pair is T 234-G 244
Stack -2.10External closing pair is A 235-T 243
Stack -3.30External closing pair is G 236-C 242
Helix -7.80 5 base pairs.
Hairpin loop 5.70Closing pair is G 237-C 241
Stack -2.10External closing pair is T 209-A 223
Stack -2.50External closing pair is G 210-C 222
Helix -4.60 3 base pairs.
Bulge loop 3.20External closing pair is T 211-G 221
Stack -0.90External closing pair is T 212-A 219
Helix -0.90 2 base pairs.
Hairpin loop 2.70Closing pair is T 213-A 218
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 34
seq.txt
ΔG = -808.50

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Multi-loop 2.90External closing pair is T 361-G 2222
20 ss bases & 5 closing helices.
Stack -2.10External closing pair is C 2109-G 2217
Stack -1.10External closing pair is A 2110-T 2216
Stack -1.30External closing pair is T 2111-A 2215
Stack -2.20External closing pair is A 2112-T 2214
Stack -3.30External closing pair is C 2113-G 2213
Stack -2.10External closing pair is C 2114-G 2212
Helix -12.10 7 base pairs.
Multi-loop 2.60External closing pair is A 2115-T 2211
21 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.40External closing pair is G 2140-T 2153
Stack -1.00External closing pair is T 2141-A 2152
Stack -2.10External closing pair is G 2142-T 2151
Stack -3.40External closing pair is G 2143-C 2150
Helix -7.90 5 base pairs.
Hairpin loop 3.90Closing pair is C 2144-G 2149
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -0.50External closing pair is T 365-G 2048
Stack -1.40External closing pair is T 366-G 2047
Stack -2.40External closing pair is G 367-C 2046
Stack -1.10External closing pair is A 368-T 2045
Stack -2.10External closing pair is T 369-A 2044
Stack -2.40External closing pair is G 370-C 2043
Stack -2.20External closing pair is A 371-T 2042
Stack -1.40External closing pair is C 372-G 2041
Stack -1.40External closing pair is G 373-T 2040
Stack -0.90External closing pair is T 374-A 2039
Helix -15.80 11 base pairs.
Bulge loop 2.90External closing pair is T 375-A 2038
Stack -0.90External closing pair is T 377-A 2037
Stack -1.30External closing pair is T 378-A 2036
Stack -1.00External closing pair is T 379-G 2035
Stack -2.20External closing pair is A 380-T 2034
Stack -2.10External closing pair is C 381-G 2033
Stack -2.10External closing pair is A 382-T 2032
Stack -2.50External closing pair is G 383-C 2031
Helix -12.10 8 base pairs.
Multi-loop 2.90External closing pair is T 384-G 2030
7 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 525-C 1990
Stack -2.10External closing pair is C 526-G 1989
Stack -0.90External closing pair is A 527-T 1988
Stack -1.10External closing pair is A 528-T 1987
Stack -0.90External closing pair is T 529-A 1986
Stack -0.90External closing pair is T 530-A 1985
Stack -0.90External closing pair is T 531-A 1984
Helix -10.20 8 base pairs.
Multi-loop 2.80External closing pair is T 532-A 1983
8 ss bases & 4 closing helices.
Stack -3.30External closing pair is G 1941-C 1980
Helix -3.30 2 base pairs.
Interior loop 3.00External closing pair is G 1942-C 1979
Stack -2.20External closing pair is A 1944-T 1976
Stack -2.10External closing pair is C 1945-G 1975
Helix -4.30 3 base pairs.
Interior loop 4.10External closing pair is T 1946-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Bulge loop 6.50External closing pair is G 611-T 1892
Stack -0.90External closing pair is T 612-A 1874
Stack -1.00External closing pair is T 613-A 1873
Stack -2.50External closing pair is G 614-T 1872
Stack -3.30External closing pair is C 615-G 1871
Helix -7.70 5 base pairs.
Bulge loop 1.40External closing pair is C 616-G 1870
Stack -2.20External closing pair is G 618-C 1869
Stack -0.90External closing pair is T 619-A 1868
Helix -3.10 3 base pairs.
Interior loop 4.00External closing pair is T 620-A 1867
Stack -1.40External closing pair is A 623-T 1865
Stack -1.40External closing pair is T 624-G 1864
Stack -2.40External closing pair is G 625-C 1863
Stack -2.20External closing pair is A 626-T 1862
Stack -2.10External closing pair is C 627-G 1861
Helix -9.50 6 base pairs.
Interior loop 1.10External closing pair is A 628-T 1860
Stack -2.40External closing pair is G 630-C 1858
Helix -2.40 2 base pairs.
Bulge loop 3.70External closing pair is A 631-T 1857
Stack -1.50External closing pair is G 632-C 1853
Stack -1.30External closing pair is G 633-T 1852
Stack -0.90External closing pair is A 634-T 1851
Helix -3.70 4 base pairs.
Interior loop 0.30External closing pair is A 635-T 1850
Stack -2.40External closing pair is T 638-A 1847
Stack -1.40External closing pair is C 639-G 1846
Stack -2.10External closing pair is G 640-T 1845
Helix -5.90 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 1844
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 666-A 1823
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 667-C 1822
Stack -2.40External closing pair is T 669-A 1820
Stack -2.10External closing pair is C 670-G 1819
Stack -0.90External closing pair is T 671-A 1818
Stack -0.90External closing pair is T 672-A 1817
Stack -2.40External closing pair is T 673-A 1816
Helix -8.70 6 base pairs.
Multi-loop 1.20External closing pair is C 674-G 1815
13 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -3.40External closing pair is G 682-C 1757
Stack -2.10External closing pair is C 683-G 1756
Stack -1.10External closing pair is A 684-T 1755
Helix -6.60 4 base pairs.
Bulge loop 3.80External closing pair is T 685-A 1754
Stack -2.50External closing pair is G 686-T 1751
Stack -2.40External closing pair is C 687-G 1750
Stack -3.40External closing pair is G 688-C 1749
Stack -2.10External closing pair is C 689-G 1748
Stack -1.10External closing pair is A 690-T 1747
Helix -11.50 6 base pairs.
Multi-loop 4.10External closing pair is T 691-A 1746
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.30External closing pair is T 692-A 1716
Stack -1.10External closing pair is A 693-T 1715
Stack -1.30External closing pair is T 694-A 1714
Stack -1.10External closing pair is A 695-T 1713
Stack -1.30External closing pair is T 696-A 1712
Stack -0.60External closing pair is T 697-G 1711
Helix -6.70 7 base pairs.
Interior loop 1.70External closing pair is T 698-A 1710
Stack -2.40External closing pair is T 700-A 1708
Stack -2.40External closing pair is C 701-G 1707
Stack -3.40External closing pair is G 702-C 1706
Helix -8.20 4 base pairs.
Interior loop 0.40External closing pair is C 703-G 1705
Stack -2.20External closing pair is G 705-C 1703
Helix -2.20 2 base pairs.
Bulge loop 1.40External closing pair is T 706-A 1702
Stack -2.10External closing pair is C 708-G 1701
Stack -2.20External closing pair is A 709-T 1700
Helix -4.30 3 base pairs.
Multi-loop 1.60External closing pair is C 710-G 1699
24 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1009-A 1691
Stack -0.60External closing pair is T 1010-G 1690
Stack -1.30External closing pair is T 1011-A 1689
Helix -3.20 4 base pairs.
Interior loop 1.10External closing pair is A 1012-T 1688
Stack -3.40External closing pair is G 1014-C 1686
Stack -2.10External closing pair is C 1015-G 1685
Stack -1.00External closing pair is T 1016-G 1684
Stack -2.10External closing pair is A 1017-T 1683
Helix -8.60 5 base pairs.
Multi-loop 2.60External closing pair is G 1018-C 1682
22 ss bases & 4 closing helices.
Stack -2.10External closing pair is C 1574-G 1675
Stack -2.10External closing pair is A 1575-T 1674
Stack -3.30External closing pair is G 1576-C 1673
Helix -7.50 4 base pairs.
Bulge loop 1.40External closing pair is G 1577-C 1672
Stack -1.10External closing pair is A 1578-T 1670
Stack -1.30External closing pair is T 1579-A 1669
Stack -2.20External closing pair is A 1580-T 1668
Helix -4.60 4 base pairs.
Multi-loop 1.30External closing pair is C 1581-G 1667
9 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 1648-C 1663
Stack -2.10External closing pair is A 1649-T 1662
Stack -2.20External closing pair is G 1650-C 1661
Stack -0.90External closing pair is T 1651-A 1660
Stack -0.90External closing pair is T 1652-A 1659
Helix -8.50 6 base pairs.
Hairpin loop 5.10Closing pair is T 1653-A 1658
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1583-A 1628
Stack -2.40External closing pair is G 1584-C 1627
Stack -0.90External closing pair is A 1585-T 1626
Stack -2.20External closing pair is A 1586-T 1625
Helix -7.60 5 base pairs.
Bulge loop 5.90External closing pair is C 1587-G 1624
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -0.90External closing pair is T 1511-A 1567
Stack -0.90External closing pair is T 1512-A 1566
Stack -0.90External closing pair is T 1513-A 1565
Stack -0.90External closing pair is T 1514-A 1564
Stack -2.10External closing pair is T 1515-A 1563
Stack -3.40External closing pair is G 1516-C 1562
Stack -2.10External closing pair is C 1517-G 1561
Helix -11.20 8 base pairs.
Bulge loop 3.70External closing pair is A 1518-T 1560
Stack -3.40External closing pair is G 1522-C 1559
Stack -2.10External closing pair is C 1523-G 1558
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is A 1524-T 1557
Stack -1.30External closing pair is T 1526-A 1555
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -7.90 6 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -1.30External closing pair is G 1024-T 1505
Stack -2.20External closing pair is A 1025-T 1504
Stack -2.10External closing pair is C 1026-G 1503
Stack -0.90External closing pair is T 1027-A 1502
Stack -2.10External closing pair is T 1028-A 1501
Stack -3.40External closing pair is G 1029-C 1500
Stack -2.10External closing pair is C 1030-G 1499
Helix -14.10 8 base pairs.
Multi-loop 4.70External closing pair is T 1031-A 1498
14 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -0.90External closing pair is A 1121-T 1455
Stack -2.10External closing pair is A 1122-T 1454
Helix -3.00 3 base pairs.
Bulge loop 1.40External closing pair is G 1123-C 1453
Stack -2.10External closing pair is A 1124-T 1451
Stack -1.50External closing pair is G 1125-C 1450
Stack -1.30External closing pair is G 1126-T 1449
Stack -2.20External closing pair is A 1127-T 1448
Stack -1.40External closing pair is C 1128-G 1447
Stack -2.10External closing pair is G 1129-T 1446
Stack -2.40External closing pair is G 1130-C 1445
Stack -0.60External closing pair is A 1131-T 1444
Stack -1.40External closing pair is G 1132-T 1443
Stack -1.30External closing pair is T 1133-A 1442
Helix -16.30 11 base pairs.
Interior loop 1.70External closing pair is T 1134-G 1441
Stack -2.40External closing pair is T 1136-A 1439
Helix -2.40 2 base pairs.
Multi-loop 1.20External closing pair is C 1137-G 1438
30 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -1.30External closing pair is T 1032-A 1114
Stack -0.60External closing pair is T 1033-G 1113
Stack -2.10External closing pair is T 1034-A 1112
Stack -2.20External closing pair is G 1035-C 1111
Stack -2.40External closing pair is T 1036-A 1110
Stack -2.10External closing pair is C 1037-G 1109
Stack -2.10External closing pair is T 1038-A 1108
Helix -12.80 8 base pairs.
Interior loop 3.40External closing pair is G 1039-C 1107
Stack -2.40External closing pair is T 1051-A 1095
Stack -2.10External closing pair is C 1052-G 1094
Stack -2.10External closing pair is T 1053-A 1093
Helix -6.60 4 base pairs.
Bulge loop 5.60External closing pair is G 1054-C 1092
Stack -2.10External closing pair is T 1067-A 1091
Stack -2.40External closing pair is G 1068-C 1090
Stack -0.90External closing pair is A 1069-T 1089
Helix -5.40 4 base pairs.
Interior loop 2.60External closing pair is A 1070-T 1088
Stack -2.10External closing pair is T 1073-A 1084
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 1074-C 1083
Stack -2.20External closing pair is A 716-T 996
Stack -2.10External closing pair is C 717-G 995
Stack -2.10External closing pair is A 718-T 994
Helix -6.40 4 base pairs.
Interior loop 1.60External closing pair is G 719-C 993
Stack -1.10External closing pair is A 723-T 990
Stack -0.90External closing pair is T 724-A 989
Stack -2.10External closing pair is T 725-A 988
Stack -2.40External closing pair is G 726-C 987
Helix -6.50 5 base pairs.
Interior loop 0.90External closing pair is A 727-T 986
Stack -0.90External closing pair is A 730-T 983
Helix -0.90 2 base pairs.
Interior loop 1.10External closing pair is A 731-T 982
Stack -3.30External closing pair is C 733-G 980
Stack -2.40External closing pair is C 734-G 979
Stack -3.30External closing pair is G 735-C 978
Helix -9.00 4 base pairs.
Multi-loop 3.60External closing pair is G 736-C 977
29 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 794-T 966
Stack -3.40External closing pair is G 795-C 965
Stack -2.10External closing pair is C 796-G 964
Stack -1.10External closing pair is A 797-T 963
Stack -1.30External closing pair is T 798-A 962
Stack -0.90External closing pair is A 799-T 961
Stack -0.90External closing pair is A 800-T 960
Helix -11.80 8 base pairs.
Multi-loop 4.50External closing pair is A 801-T 959
22 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -1.30External closing pair is T 809-A 920
Stack -1.40External closing pair is T 810-G 919
Stack -3.40External closing pair is G 811-C 918
Stack -2.40External closing pair is C 812-G 917
Stack -3.30External closing pair is G 813-C 916
Helix -11.80 6 base pairs.
Multi-loop 3.60External closing pair is G 814-C 915
12 ss bases & 3 closing helices.
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -0.90External closing pair is T 817-A 857
Stack -2.40External closing pair is T 818-A 856
Helix -3.30 3 base pairs.
Bulge loop 3.70External closing pair is C 819-G 855
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.10External closing pair is G 753-T 790
Stack -2.50External closing pair is G 754-C 789
Stack -1.50External closing pair is T 755-G 788
Stack -2.10External closing pair is C 756-G 787
Helix -8.20 5 base pairs.
Interior loop 3.10External closing pair is A 757-T 786
Stack -2.20External closing pair is A 762-T 779
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -7.80 5 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Interior loop -0.40External closing pair is T 387-A 523
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 35
seq.txt
ΔG = -806.70

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 2.80External closing pair is G 46-C 3102
3 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is C 47-G 2664
Stack -0.90External closing pair is T 48-A 2663
Stack -2.10External closing pair is T 49-A 2662
Helix -5.10 4 base pairs.
Multi-loop 4.10External closing pair is G 50-C 2661
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1021-A 2649
Stack -2.40External closing pair is T 1022-A 2648
Stack -1.40External closing pair is C 1023-G 2647
Stack -1.30External closing pair is G 1024-T 2646
Stack -2.20External closing pair is A 1025-T 2645
Stack -2.10External closing pair is C 1026-G 2644
Helix -10.30 7 base pairs.
Bulge loop 6.20External closing pair is T 1027-A 2643
Stack -1.40External closing pair is T 1028-G 2629
Stack -3.40External closing pair is G 1029-C 2628
Stack -2.10External closing pair is C 1030-G 2627
Stack -1.30External closing pair is T 1031-A 2626
Stack -0.60External closing pair is T 1032-G 2625
Stack -0.90External closing pair is T 1033-A 2624
Helix -9.70 7 base pairs.
Interior loop 1.90External closing pair is T 1034-A 2623
Stack -2.50External closing pair is G 1039-T 2618
Helix -2.50 2 base pairs.
Bulge loop 1.70External closing pair is C 1040-G 2617
Stack -2.20External closing pair is A 1042-T 2616
Stack -2.10External closing pair is C 1043-G 2615
Stack -0.90External closing pair is T 1044-A 2614
Stack -0.90External closing pair is T 1045-A 2613
Stack -0.90External closing pair is T 1046-A 2612
Stack -0.90External closing pair is T 1047-A 2611
Stack -1.30External closing pair is T 1048-A 2610
Stack -1.40External closing pair is A 1049-T 2609
Helix -10.60 9 base pairs.
Multi-loop 2.80External closing pair is T 1050-G 2608
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 2122-T 2601
Stack -3.30External closing pair is C 2123-G 2600
Stack -2.10External closing pair is C 2124-G 2599
Helix -7.60 4 base pairs.
Bulge loop 1.70External closing pair is A 2125-T 2598
Stack -3.30External closing pair is G 2127-C 2597
Stack -2.40External closing pair is G 2128-C 2596
Stack -0.90External closing pair is A 2129-T 2595
Helix -6.60 4 base pairs.
Bulge loop 5.60External closing pair is A 2130-T 2594
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -3.40External closing pair is G 1054-C 2120
Stack -3.30External closing pair is C 1055-G 2119
Stack -2.10External closing pair is C 1056-G 2118
Stack -1.10External closing pair is A 1057-T 2117
Stack -0.90External closing pair is T 1058-A 2116
Helix -10.80 6 base pairs.
Multi-loop 2.50External closing pair is T 1059-A 2115
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2069-C 2109
Stack -2.10External closing pair is T 2070-A 2108
Helix -4.30 3 base pairs.
Bulge loop 1.60External closing pair is G 2071-C 2107
Stack -1.30External closing pair is T 2072-A 2105
Stack -0.90External closing pair is A 2073-T 2104
Helix -2.20 3 base pairs.
Interior loop 3.20External closing pair is A 2074-T 2103
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -0.60External closing pair is A 1070-T 2067
Stack -2.50External closing pair is G 1071-T 2066
Stack -2.10External closing pair is C 1072-G 2065
Stack -2.10External closing pair is T 1073-A 2064
Stack -3.30External closing pair is G 1074-C 2063
Helix -10.60 6 base pairs.
Multi-loop 1.10External closing pair is G 1075-C 2062
14 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.20External closing pair is A 1082-T 2042
Stack -2.10External closing pair is C 1083-G 2041
Stack -1.10External closing pair is A 1084-T 2040
Helix -5.40 4 base pairs.
Interior loop 3.60External closing pair is T 1085-A 2039
Stack -0.90External closing pair is T 1088-A 2037
Stack -2.40External closing pair is T 1089-A 2036
Stack -2.10External closing pair is C 1090-G 2035
Stack -2.20External closing pair is A 1091-T 2034
Stack -2.10External closing pair is C 1092-G 2033
Stack -2.10External closing pair is A 1093-T 2032
Helix -11.80 7 base pairs.
Multi-loop 0.40External closing pair is G 1094-C 2031
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1115-G 2026
Stack -1.30External closing pair is T 1116-A 2025
Helix -3.40 3 base pairs.
Interior loop -2.90External closing pair is T 1117-G 2024
Stack -1.30External closing pair is G 1120-T 2021
Stack -0.90External closing pair is A 1121-T 2020
Stack -0.60External closing pair is A 1122-T 2019
Helix -2.80 4 base pairs.
Multi-loop 0.90External closing pair is G 1123-T 2018
9 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1921-C 2016
Stack -2.40External closing pair is C 1922-G 2015
Stack -1.50External closing pair is G 1923-C 2014
Stack -1.40External closing pair is G 1924-T 2013
Stack -1.30External closing pair is T 1925-A 2012
Helix -10.00 6 base pairs.
Interior loop 1.70External closing pair is T 1926-G 2011
Stack -1.30External closing pair is T 1928-A 2009
Stack -0.60External closing pair is A 1929-T 2008
Stack -1.40External closing pair is G 1930-T 2007
Stack -1.30External closing pair is T 1931-A 2006
Stack -1.00External closing pair is T 1932-G 2005
Helix -5.60 6 base pairs.
Interior loop 4.70External closing pair is A 1933-T 2004
Stack -2.40External closing pair is G 1937-C 1995
Stack -0.90External closing pair is A 1938-T 1994
Helix -3.30 3 base pairs.
Interior loop 1.10External closing pair is A 1939-T 1993
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1130-C 1918
Stack -2.10External closing pair is A 1131-T 1917
Stack -2.20External closing pair is G 1132-C 1916
Stack -0.90External closing pair is T 1133-A 1915
Stack -2.10External closing pair is T 1134-A 1914
Stack -2.20External closing pair is G 1135-C 1913
Helix -11.90 7 base pairs.
Multi-loop 3.80External closing pair is T 1136-A 1912
19 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -3.40External closing pair is G 1147-C 1879
Stack -2.10External closing pair is C 1148-G 1878
Stack -2.10External closing pair is A 1149-T 1877
Helix -7.60 4 base pairs.
Multi-loop 2.40External closing pair is G 1150-C 1876
17 ss bases & 3 closing helices.
Stack -1.50External closing pair is T 1862-G 1871
Stack -2.40External closing pair is C 1863-G 1870
Helix -3.90 3 base pairs.
Hairpin loop 3.70Closing pair is G 1864-C 1869
Stack -0.60External closing pair is A 1163-T 1860
Stack -2.10External closing pair is G 1164-T 1859
Stack -2.40External closing pair is G 1165-C 1858
Stack -1.10External closing pair is A 1166-T 1857
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is T 1167-A 1856
Stack -2.50External closing pair is G 1174-T 1850
Stack -3.30External closing pair is C 1175-G 1849
Stack -2.10External closing pair is C 1176-G 1848
Stack -2.40External closing pair is T 1177-A 1847
Stack -2.10External closing pair is C 1178-G 1846
Stack -2.10External closing pair is A 1179-T 1845
Helix -14.50 7 base pairs.
Multi-loop 0.50External closing pair is G 1180-C 1844
23 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is G 1196-C 1437
Stack -1.10External closing pair is A 1197-T 1436
Stack -2.40External closing pair is T 1198-A 1435
Stack -2.10External closing pair is C 1199-G 1434
Helix -8.00 5 base pairs.
Multi-loop 0.10External closing pair is T 1200-A 1433
18 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1429
Stack -2.20External closing pair is G 1303-C 1428
Stack -1.30External closing pair is T 1304-A 1427
Stack -1.10External closing pair is A 1305-T 1426
Helix -7.90 5 base pairs.
Multi-loop 3.90External closing pair is T 1306-A 1425
27 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -1.40External closing pair is G 1329-T 1365
Stack -0.90External closing pair is T 1330-A 1364
Helix -2.30 3 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1363
Stack -3.30External closing pair is C 1333-G 1361
Stack -2.10External closing pair is C 1334-G 1360
Stack -0.90External closing pair is A 1335-T 1359
Helix -6.30 4 base pairs.
Bulge loop 4.60External closing pair is A 1336-T 1358
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.20External closing pair is A 52-T 1019
Stack -2.10External closing pair is C 53-G 1018
Helix -4.30 3 base pairs.
Bulge loop 1.70External closing pair is T 54-A 1017
Stack -3.40External closing pair is G 55-C 1015
Helix -3.40 2 base pairs.
Bulge loop 1.70External closing pair is C 56-G 1014
Stack -1.30External closing pair is T 57-A 1012
Stack -0.60External closing pair is A 58-T 1011
Stack -0.50External closing pair is G 59-T 1010
Stack -1.40External closing pair is G 60-T 1009
Helix -3.80 5 base pairs.
Interior loop 1.70External closing pair is T 61-A 1008
Stack -1.30External closing pair is T 63-A 1006
Stack -2.10External closing pair is A 64-T 1005
Helix -3.40 3 base pairs.
Bulge loop 2.30External closing pair is G 65-C 1004
Stack -2.50External closing pair is G 67-T 1003
Stack -1.40External closing pair is C 68-G 1002
Stack -1.30External closing pair is G 69-T 1001
Stack -0.60External closing pair is A 70-T 1000
Stack -1.30External closing pair is G 71-T 999
Stack -1.10External closing pair is A 72-T 998
Stack -1.30External closing pair is T 73-A 997
Stack -2.20External closing pair is A 74-T 996
Helix -11.70 9 base pairs.
Bulge loop 4.80External closing pair is C 75-G 995
Stack -3.30External closing pair is C 76-G 985
Stack -2.10External closing pair is C 77-G 984
Stack -0.90External closing pair is A 78-T 983
Stack -1.10External closing pair is A 79-T 982
Stack -2.40External closing pair is T 80-A 981
Stack -3.30External closing pair is C 81-G 980
Helix -13.10 7 base pairs.
Multi-loop 1.00External closing pair is C 82-G 979
22 ss bases & 5 closing helices.
Stack -2.10External closing pair is G 949-T 974
Stack -2.40External closing pair is G 950-C 973
Stack -1.10External closing pair is A 951-T 972
Stack -2.10External closing pair is T 952-A 971
Stack -2.20External closing pair is G 953-C 970
Helix -9.90 6 base pairs.
Bulge loop 1.40External closing pair is T 954-A 969
Stack -2.10External closing pair is C 956-G 968
Stack -1.30External closing pair is T 957-A 967
Helix -3.40 3 base pairs.
Hairpin loop 5.60Closing pair is A 958-T 966
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 90-A 874
Stack -2.20External closing pair is G 91-C 873
Stack -0.90External closing pair is T 92-A 872
Stack -2.10External closing pair is T 93-A 871
Stack -2.50External closing pair is G 94-C 870
Stack -0.60External closing pair is T 95-G 869
Helix -10.40 7 base pairs.
Bulge loop 2.80External closing pair is T 96-A 868
Stack -2.50External closing pair is G 97-T 866
Stack -2.10External closing pair is C 98-G 865
Stack -1.40External closing pair is T 99-G 864
Stack -2.20External closing pair is G 100-C 863
Stack -0.90External closing pair is T 101-A 862
Helix -9.10 6 base pairs.
Multi-loop 4.80External closing pair is T 102-A 861
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 1.90External closing pair is C 116-G 811
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -3.40External closing pair is G 118-C 796
Stack -2.10External closing pair is C 119-G 795
Stack -0.90External closing pair is T 120-A 794
Stack -1.30External closing pair is T 121-A 793
Helix -7.70 5 base pairs.
Multi-loop 3.90External closing pair is A 122-T 792
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -5.60 4 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -2.40External closing pair is T 127-A 762
Stack -3.30External closing pair is C 128-G 761
Stack -1.40External closing pair is C 129-G 760
Helix -7.10 4 base pairs.
Bulge loop 2.40External closing pair is G 130-T 759
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -6.70 4 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253

Structure 36
seq.txt
ΔG = -806.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.90External closing pair is T 177-G 2522
3 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.40External closing pair is T 178-A 2474
Stack -2.10External closing pair is C 179-G 2473
Helix -4.50 3 base pairs.
Multi-loop 2.20External closing pair is T 180-A 2472
9 ss bases & 4 closing helices.
Stack -1.30External closing pair is T 2449-A 2469
Stack -2.20External closing pair is A 2450-T 2468
Stack -2.10External closing pair is C 2451-G 2467
Helix -5.60 4 base pairs.
Interior loop 1.70External closing pair is T 2452-G 2466
Stack -0.90External closing pair is T 2454-A 2464
Stack -0.90External closing pair is T 2455-A 2463
Stack -2.10External closing pair is T 2456-A 2462
Helix -3.90 4 base pairs.
Hairpin loop 5.70Closing pair is G 2457-C 2461
Stack -1.40External closing pair is T 2429-G 2446
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -9.10 7 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.10External closing pair is C 182-G 2424
Stack -1.10External closing pair is A 183-T 2423
Stack -1.30External closing pair is T 184-A 2422
Stack -2.20External closing pair is A 185-T 2421
Stack -2.10External closing pair is C 186-G 2420
Stack -0.50External closing pair is T 187-G 2419
Stack -1.00External closing pair is T 188-G 2418
Helix -10.30 8 base pairs.
Interior loop 3.20External closing pair is A 189-T 2417
Stack -3.40External closing pair is G 191-C 2414
Helix -3.40 2 base pairs.
Interior loop 2.90External closing pair is C 192-G 2413
Stack -2.50External closing pair is G 198-T 2409
Stack -3.30External closing pair is C 199-G 2408
Stack -2.40External closing pair is C 200-G 2407
Stack -3.30External closing pair is G 201-C 2406
Helix -11.50 5 base pairs.
Interior loop 3.40External closing pair is G 202-C 2405
Stack -2.10External closing pair is A 206-T 2403
Stack -2.20External closing pair is G 207-C 2402
Stack -0.90External closing pair is T 208-A 2401
Stack -2.10External closing pair is T 209-A 2400
Stack -2.20External closing pair is G 210-C 2399
Stack -1.30External closing pair is T 211-A 2398
Stack -0.50External closing pair is T 212-G 2397
Stack -1.40External closing pair is T 213-G 2396
Stack -2.40External closing pair is G 214-C 2395
Stack -0.90External closing pair is A 215-T 2394
Stack -0.90External closing pair is A 216-T 2393
Helix -16.90 12 base pairs.
Multi-loop 2.50External closing pair is A 217-T 2392
25 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 270-G 2390
Stack -2.40External closing pair is T 271-A 2389
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is C 272-G 2388
Stack -0.90External closing pair is A 275-T 2385
Stack -0.60External closing pair is A 276-T 2384
Stack -1.30External closing pair is G 277-T 2383
Stack -0.90External closing pair is A 278-T 2382
Stack -2.10External closing pair is A 279-T 2381
Stack -3.40External closing pair is G 280-C 2380
Helix -9.20 7 base pairs.
Multi-loop 2.60External closing pair is C 281-G 2379
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 283-T 2262
Stack -3.30External closing pair is C 284-G 2261
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is C 285-G 2260
Stack -2.40External closing pair is G 286-C 2258
Stack -1.10External closing pair is A 287-T 2257
Helix -3.50 3 base pairs.
Bulge loop 2.50External closing pair is T 288-A 2256
Stack -0.60External closing pair is T 290-G 2255
Stack -0.90External closing pair is T 291-A 2254
Stack -1.30External closing pair is T 292-A 2253
Stack -1.10External closing pair is A 293-T 2252
Helix -3.90 5 base pairs.
Multi-loop 4.10External closing pair is T 294-A 2251
21 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 332-T 2249
Stack -0.90External closing pair is A 333-T 2248
Stack -2.10External closing pair is A 334-T 2247
Stack -2.20External closing pair is G 335-C 2246
Stack -1.30External closing pair is T 336-A 2245
Helix -7.40 6 base pairs.
Interior loop 1.10External closing pair is A 337-T 2244
Stack -3.30External closing pair is G 339-C 2242
Stack -2.40External closing pair is G 340-C 2241
Helix -5.70 3 base pairs.
Bulge loop 2.90External closing pair is A 341-T 2240
Stack -0.90External closing pair is A 343-T 2239
Stack -1.40External closing pair is A 344-T 2238
Helix -2.30 3 base pairs.
Interior loop 3.40External closing pair is T 345-G 2237
Stack -0.90External closing pair is A 348-T 2235
Stack -2.20External closing pair is A 349-T 2234
Stack -2.40External closing pair is C 350-G 2233
Stack -2.40External closing pair is G 351-C 2232
Stack -2.20External closing pair is A 352-T 2231
Stack -2.10External closing pair is C 353-G 2230
Helix -12.20 7 base pairs.
Interior loop 2.10External closing pair is T 354-A 2229
Stack -3.40External closing pair is G 357-C 2226
Stack -3.30External closing pair is C 358-G 2225
Stack -2.10External closing pair is C 359-G 2224
Stack -1.30External closing pair is T 360-A 2223
Helix -10.10 5 base pairs.
Bulge loop 5.20External closing pair is T 361-G 2222
Stack -3.30External closing pair is C 362-G 2213
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 363-G 2212
Stack -1.30External closing pair is T 365-A 2210
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 366-G 2209
Stack -2.10External closing pair is T 369-A 2206
Helix -2.10 2 base pairs.
Bulge loop 2.80External closing pair is G 370-C 2205
Stack -2.20External closing pair is G 373-C 2204
Stack -0.90External closing pair is T 374-A 2203
Stack -1.30External closing pair is T 375-A 2202
Helix -4.40 4 base pairs.
Interior loop 2.30External closing pair is A 376-T 2201
Stack -2.20External closing pair is A 380-T 2198
Stack -2.10External closing pair is C 381-G 2197
Stack -2.10External closing pair is A 382-T 2196
Helix -6.40 4 base pairs.
Bulge loop 1.60External closing pair is G 383-C 2195
Stack -2.10External closing pair is T 384-A 2193
Stack -2.20External closing pair is G 385-C 2192
Stack -0.90External closing pair is T 386-A 2191
Stack -2.10External closing pair is T 387-A 2190
Helix -7.30 5 base pairs.
Bulge loop 1.40External closing pair is G 388-C 2189
Stack -2.20External closing pair is A 389-T 2187
Stack -3.30External closing pair is C 390-G 2186
Stack -2.10External closing pair is C 391-G 2185
Helix -7.60 4 base pairs.
Bulge loop 2.40External closing pair is A 392-T 2184
Stack -1.00External closing pair is T 393-G 2182
Stack -2.20External closing pair is A 394-T 2181
Stack -3.30External closing pair is C 395-G 2180
Stack -2.10External closing pair is C 396-G 2179
Stack -2.10External closing pair is A 397-T 2178
Helix -10.70 6 base pairs.
Multi-loop 1.90External closing pair is G 398-C 2177
26 ss bases & 4 closing helices.
Stack -1.40External closing pair is G 2140-T 2171
Stack -2.10External closing pair is T 2141-A 2170
Stack -3.30External closing pair is G 2142-C 2169
Stack -3.40External closing pair is G 2143-C 2168
Stack -2.10External closing pair is C 2144-G 2167
Stack -0.90External closing pair is T 2145-A 2166
Helix -13.20 7 base pairs.
Bulge loop 3.30External closing pair is T 2146-A 2165
Stack -2.10External closing pair is C 2147-G 2162
Stack -0.60External closing pair is A 2148-T 2161
Stack -2.50External closing pair is G 2149-T 2160
Stack -2.10External closing pair is C 2150-G 2159
Stack -1.00External closing pair is T 2151-G 2158
Helix -8.30 6 base pairs.
Hairpin loop 5.00Closing pair is A 2152-T 2157
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.20External closing pair is G 410-C 2109
Stack -2.10External closing pair is T 411-A 2108
Stack -2.40External closing pair is G 412-C 2107
Helix -6.70 4 base pairs.
Interior loop 1.70External closing pair is A 413-T 2106
Stack -1.30External closing pair is G 415-T 2104
Stack -2.10External closing pair is A 416-T 2103
Helix -3.40 3 base pairs.
Multi-loop 4.20External closing pair is G 417-C 2102
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -3.30External closing pair is C 418-G 2078
Stack -2.10External closing pair is C 419-G 2077
Stack -0.90External closing pair is A 420-T 2076
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 421-T 2075
Stack -1.40External closing pair is A 424-T 2072
Stack -1.00External closing pair is T 425-G 2071
Stack -2.20External closing pair is A 426-T 2070
Stack -3.30External closing pair is C 427-G 2069
Stack -2.10External closing pair is C 428-G 2068
Stack -0.90External closing pair is A 429-T 2067
Stack -2.20External closing pair is A 430-T 2066
Stack -2.10External closing pair is C 431-G 2065
Stack -2.10External closing pair is T 432-A 2064
Helix -17.30 10 base pairs.
Multi-loop 2.00External closing pair is G 433-C 2063
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 1683-A 2058
Stack -3.30External closing pair is G 1684-C 2057
Stack -3.40External closing pair is G 1685-C 2056
Helix -8.80 4 base pairs.
Multi-loop 1.70External closing pair is C 1686-G 2055
15 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -2.10External closing pair is C 1694-G 2026
Stack -2.40External closing pair is T 1695-A 2025
Stack -3.30External closing pair is C 1696-G 2024
Stack -2.10External closing pair is C 1697-G 2023
Stack -0.60External closing pair is A 1698-T 2022
Helix -10.50 6 base pairs.
Interior loop 1.70External closing pair is G 1699-T 2021
Stack -1.30External closing pair is G 1701-T 2019
Stack -2.20External closing pair is A 1702-T 2018
Helix -3.50 3 base pairs.
Bulge loop 1.40External closing pair is C 1703-G 2017
Stack -3.40External closing pair is G 1705-C 2016
Stack -2.40External closing pair is C 1706-G 2015
Stack -2.40External closing pair is G 1707-C 2014
Helix -8.20 4 base pairs.
Interior loop 4.70External closing pair is A 1708-T 2013
Stack -1.00External closing pair is T 1713-G 2011
Stack -1.10External closing pair is A 1714-T 2010
Stack -1.30External closing pair is T 1715-A 2009
Stack -0.90External closing pair is A 1716-T 2008
Stack -1.10External closing pair is A 1717-T 2007
Stack -1.30External closing pair is T 1718-A 2006
Stack -1.00External closing pair is T 1719-G 2005
Stack -1.10External closing pair is A 1720-T 2004
Helix -8.80 9 base pairs.
Interior loop 4.70External closing pair is T 1721-A 2003
Stack -2.40External closing pair is T 1723-A 1998
Stack -2.10External closing pair is C 1724-G 1997
Stack -2.10External closing pair is T 1725-A 1996
Stack -2.40External closing pair is G 1726-C 1995
Stack -0.90External closing pair is A 1727-T 1994
Stack -2.10External closing pair is A 1728-T 1993
Helix -12.00 7 base pairs.
Multi-loop 2.70External closing pair is G 1729-C 1992
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 1733-A 1936
Stack -3.30External closing pair is C 1734-G 1935
Helix -5.70 3 base pairs.
Multi-loop 2.20External closing pair is C 1735-G 1934
19 ss bases & 3 closing helices.
Stack -1.40External closing pair is T 1755-G 1923
Stack -3.40External closing pair is G 1756-C 1922
Helix -4.80 3 base pairs.
Interior loop 2.00External closing pair is C 1757-G 1921
Stack -1.40External closing pair is T 1760-G 1919
Stack -2.40External closing pair is G 1761-C 1918
Stack -2.10External closing pair is A 1762-T 1917
Stack -2.20External closing pair is G 1763-C 1916
Stack -0.90External closing pair is T 1764-A 1915
Helix -9.00 6 base pairs.
Multi-loop 4.70External closing pair is T 1765-A 1914
11 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 1860-A 1912
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -6.70 4 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.20External closing pair is A 1742-T 1751
Stack -2.40External closing pair is C 1743-G 1750
Helix -4.60 3 base pairs.
Hairpin loop 4.30Closing pair is G 1744-C 1749
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -2.10External closing pair is A 438-T 1662
Stack -2.20External closing pair is G 439-C 1661
Helix -4.30 3 base pairs.
Interior loop 1.70External closing pair is T 440-A 1660
Stack -2.40External closing pair is T 442-A 1658
Stack -2.10External closing pair is C 443-G 1657
Stack -2.10External closing pair is T 444-A 1656
Stack -2.40External closing pair is G 445-C 1655
Stack -0.90External closing pair is A 446-T 1654
Stack -0.90External closing pair is A 447-T 1653
Stack -0.90External closing pair is A 448-T 1652
Stack -2.20External closing pair is A 449-T 1651
Helix -13.90 9 base pairs.
Multi-loop 0.50External closing pair is C 450-G 1650
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.40External closing pair is G 452-C 1627
Stack -0.90External closing pair is A 453-T 1626
Stack -2.20External closing pair is A 454-T 1625
Helix -5.50 4 base pairs.
Multi-loop 1.50External closing pair is C 455-G 1624
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 464-C 1601
Stack -1.10External closing pair is A 465-T 1600
Stack -0.90External closing pair is T 466-A 1599
Stack -2.10External closing pair is T 467-A 1598
Helix -6.50 5 base pairs.
Multi-loop 0.70External closing pair is G 468-C 1597
4 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 979-C 1595
Helix -3.30 2 base pairs.
Bulge loop 1.60External closing pair is G 980-C 1594
Stack -0.90External closing pair is T 982-A 1593
Stack -2.10External closing pair is T 983-A 1592
Stack -3.30External closing pair is G 984-C 1591
Helix -6.30 4 base pairs.
Interior loop 3.30External closing pair is G 985-C 1590
Stack -0.90External closing pair is T 991-A 1586
Stack -2.40External closing pair is T 992-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 993-G 1584
Stack -2.10External closing pair is T 994-A 1582
Stack -2.20External closing pair is G 995-C 1581
Stack -1.30External closing pair is T 996-A 1580
Stack -1.10External closing pair is A 997-T 1579
Stack -1.30External closing pair is T 998-A 1578
Stack -0.50External closing pair is T 999-G 1577
Stack -0.60External closing pair is T 1000-G 1576
Stack -2.10External closing pair is T 1001-A 1575
Stack -2.20External closing pair is G 1002-C 1574
Helix -13.40 10 base pairs.
Multi-loop 3.90External closing pair is T 1003-A 1573
30 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1511-A 1567
Stack -0.90External closing pair is T 1512-A 1566
Stack -0.90External closing pair is T 1513-A 1565
Stack -0.90External closing pair is T 1514-A 1564
Stack -2.10External closing pair is T 1515-A 1563
Stack -3.40External closing pair is G 1516-C 1562
Stack -2.10External closing pair is C 1517-G 1561
Helix -11.20 8 base pairs.
Bulge loop 3.70External closing pair is A 1518-T 1560
Stack -3.40External closing pair is G 1522-C 1559
Stack -2.10External closing pair is C 1523-G 1558
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is A 1524-T 1557
Stack -1.30External closing pair is T 1526-A 1555
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -7.90 6 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -1.30External closing pair is G 1024-T 1505
Stack -2.20External closing pair is A 1025-T 1504
Stack -2.10External closing pair is C 1026-G 1503
Stack -0.90External closing pair is T 1027-A 1502
Stack -2.10External closing pair is T 1028-A 1501
Stack -3.40External closing pair is G 1029-C 1500
Stack -2.10External closing pair is C 1030-G 1499
Helix -14.10 8 base pairs.
Multi-loop 4.70External closing pair is T 1031-A 1498
14 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -0.90External closing pair is A 1121-T 1455
Stack -2.10External closing pair is A 1122-T 1454
Helix -3.00 3 base pairs.
Bulge loop 1.40External closing pair is G 1123-C 1453
Stack -2.10External closing pair is A 1124-T 1451
Stack -1.50External closing pair is G 1125-C 1450
Stack -1.30External closing pair is G 1126-T 1449
Stack -2.20External closing pair is A 1127-T 1448
Stack -1.40External closing pair is C 1128-G 1447
Stack -2.10External closing pair is G 1129-T 1446
Stack -2.40External closing pair is G 1130-C 1445
Stack -0.60External closing pair is A 1131-T 1444
Stack -1.40External closing pair is G 1132-T 1443
Stack -1.30External closing pair is T 1133-A 1442
Helix -16.30 11 base pairs.
Interior loop 1.70External closing pair is T 1134-G 1441
Stack -2.40External closing pair is T 1136-A 1439
Helix -2.40 2 base pairs.
Multi-loop 1.20External closing pair is C 1137-G 1438
30 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -1.30External closing pair is T 1032-A 1114
Stack -0.60External closing pair is T 1033-G 1113
Stack -2.10External closing pair is T 1034-A 1112
Stack -2.20External closing pair is G 1035-C 1111
Stack -2.40External closing pair is T 1036-A 1110
Stack -2.10External closing pair is C 1037-G 1109
Stack -2.10External closing pair is T 1038-A 1108
Helix -12.80 8 base pairs.
Interior loop 3.40External closing pair is G 1039-C 1107
Stack -2.40External closing pair is T 1051-A 1095
Stack -2.10External closing pair is C 1052-G 1094
Stack -2.10External closing pair is T 1053-A 1093
Helix -6.60 4 base pairs.
Bulge loop 5.60External closing pair is G 1054-C 1092
Stack -2.10External closing pair is T 1067-A 1091
Stack -2.40External closing pair is G 1068-C 1090
Stack -0.90External closing pair is A 1069-T 1089
Helix -5.40 4 base pairs.
Interior loop 2.60External closing pair is A 1070-T 1088
Stack -2.10External closing pair is T 1073-A 1084
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 1074-C 1083
Stack -2.40External closing pair is G 470-C 976
Stack -0.90External closing pair is A 471-T 975
Helix -3.30 3 base pairs.
Multi-loop 1.30External closing pair is A 472-T 974
15 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 496-G 968
Helix -2.10 2 base pairs.
Bulge loop 1.70External closing pair is T 497-A 967
Stack -3.40External closing pair is G 498-C 965
Stack -2.10External closing pair is C 499-G 964
Stack -1.10External closing pair is A 500-T 963
Stack -1.30External closing pair is T 501-A 962
Stack -0.90External closing pair is A 502-T 961
Helix -8.80 6 base pairs.
Multi-loop 4.40External closing pair is A 503-T 960
5 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 524-T 957
Stack -3.40External closing pair is G 525-C 956
Stack -2.10External closing pair is C 526-G 955
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 527-T 954
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 573-G 953
Stack -1.10External closing pair is A 574-T 952
Stack -2.40External closing pair is T 575-A 951
Stack -3.30External closing pair is C 576-G 950
Helix -8.90 5 base pairs.
Multi-loop 1.10External closing pair is C 577-G 949
18 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 582-A 871
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -15.30 8 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -9.20 6 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.10External closing pair is C 480-G 492
Stack -0.90External closing pair is A 481-T 491
Helix -3.00 3 base pairs.
Hairpin loop 4.80Closing pair is A 482-T 490
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -0.50External closing pair is G 236-T 263
Helix -0.50 2 base pairs.
Interior loop 0.20External closing pair is G 237-T 262
Stack -2.40External closing pair is T 240-A 259
Stack -3.30External closing pair is C 241-G 258
Helix -5.70 3 base pairs.
Bulge loop 1.70External closing pair is C 242-G 257
Stack -2.10External closing pair is T 243-A 255
Stack -2.20External closing pair is G 244-C 254
Stack -1.00External closing pair is T 245-A 253
Stack -1.40External closing pair is G 246-T 252
Helix -6.70 5 base pairs.
Hairpin loop 6.20Closing pair is T 247-A 251
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 37
seq.txt
ΔG = -805.80

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 3.00External closing pair is G 46-C 3102
9 ss bases & 5 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.10External closing pair is T 2565-A 2662
Stack -3.30External closing pair is G 2566-C 2661
Helix -5.40 3 base pairs.
Interior loop 2.20External closing pair is G 2567-C 2660
Stack -1.00External closing pair is T 2574-A 2652
Helix -1.00 2 base pairs.
Interior loop 1.60External closing pair is G 2575-T 2651
Stack -1.00External closing pair is T 2579-G 2647
Stack -0.60External closing pair is A 2580-T 2646
Stack -2.50External closing pair is G 2581-T 2645
Stack -2.10External closing pair is C 2582-G 2644
Stack -1.00External closing pair is T 2583-A 2643
Stack -1.30External closing pair is G 2584-T 2642
Stack -0.90External closing pair is A 2585-T 2641
Stack -2.10External closing pair is A 2586-T 2640
Stack -3.40External closing pair is G 2587-C 2639
Helix -14.90 10 base pairs.
Bulge loop 4.90External closing pair is C 2588-G 2638
Stack -3.30External closing pair is G 2599-C 2637
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is G 2600-C 2636
Stack -1.30External closing pair is G 2602-T 2634
Stack -1.40External closing pair is A 2603-T 2633
Stack 0.30External closing pair is T 2604-G 2632
Stack -1.40External closing pair is G 2605-T 2631
Stack -2.40External closing pair is T 2606-A 2630
Stack -2.40External closing pair is C 2607-G 2629
Stack -2.50External closing pair is G 2608-C 2628
Helix -11.10 8 base pairs.
Hairpin loop 6.60Closing pair is T 2609-G 2627
Stack -2.20External closing pair is A 74-T 2562
Stack -3.30External closing pair is C 75-G 2561
Helix -5.50 3 base pairs.
Bulge loop 2.80External closing pair is C 76-G 2560
Stack -2.10External closing pair is C 77-G 2557
Stack -0.90External closing pair is A 78-T 2556
Stack -1.10External closing pair is A 79-T 2555
Stack -2.40External closing pair is T 80-A 2554
Stack -3.30External closing pair is C 81-G 2553
Stack -2.10External closing pair is C 82-G 2552
Helix -11.90 7 base pairs.
Bulge loop 4.60External closing pair is A 83-T 2551
Stack -1.10External closing pair is A 88-T 2550
Stack -0.90External closing pair is T 89-A 2549
Stack -2.10External closing pair is T 90-A 2548
Helix -4.10 4 base pairs.
Bulge loop 1.60External closing pair is G 91-C 2547
Stack -0.90External closing pair is T 92-A 2545
Stack -2.10External closing pair is T 93-A 2544
Stack -2.50External closing pair is G 94-C 2543
Helix -5.50 4 base pairs.
Interior loop 1.10External closing pair is T 95-G 2542
Stack -3.40External closing pair is G 97-C 2540
Helix -3.40 2 base pairs.
Interior loop 1.30External closing pair is C 98-G 2539
Stack -2.20External closing pair is G 100-C 2536
Stack -0.90External closing pair is T 101-A 2535
Stack -0.90External closing pair is T 102-A 2534
Stack -1.30External closing pair is T 103-A 2533
Helix -5.30 5 base pairs.
Multi-loop 2.40External closing pair is T 104-G 2532
7 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 170-T 2529
Stack -2.40External closing pair is T 171-A 2528
Stack -2.10External closing pair is C 172-G 2527
Stack -2.10External closing pair is A 173-T 2526
Stack -2.20External closing pair is G 174-C 2525
Stack -1.30External closing pair is T 175-A 2524
Stack -1.40External closing pair is A 176-T 2523
Helix -12.60 8 base pairs.
Multi-loop 4.00External closing pair is T 177-G 2522
15 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 977-G 2513
Stack -1.40External closing pair is C 978-G 2512
Stack -2.10External closing pair is G 979-T 2511
Stack -2.40External closing pair is G 980-C 2510
Stack -1.10External closing pair is A 981-T 2509
Helix -10.30 6 base pairs.
Bulge loop 2.50External closing pair is T 982-A 2508
Stack -1.40External closing pair is T 983-G 2506
Stack -3.30External closing pair is G 984-C 2505
Helix -4.70 3 base pairs.
Interior loop 2.70External closing pair is G 985-C 2504
Stack -2.10External closing pair is C 987-G 2500
Stack -0.90External closing pair is A 988-T 2499
Stack -1.40External closing pair is A 989-T 2498
Stack -0.60External closing pair is T 990-G 2497
Stack -0.90External closing pair is T 991-A 2496
Stack -2.40External closing pair is T 992-A 2495
Stack -2.10External closing pair is C 993-G 2494
Stack 0.30External closing pair is T 994-G 2493
Stack -1.40External closing pair is G 995-T 2492
Stack -1.30External closing pair is T 996-A 2491
Stack -1.10External closing pair is A 997-T 2490
Stack -1.30External closing pair is T 998-A 2489
Stack -0.60External closing pair is T 999-G 2488
Stack -0.90External closing pair is T 1000-A 2487
Helix -16.70 15 base pairs.
Interior loop -0.40External closing pair is T 1001-A 2486
Stack -1.50External closing pair is T 1003-G 2484
Helix -1.50 2 base pairs.
Multi-loop 4.00External closing pair is C 1004-G 2483
4 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 1039-T 2481
Stack -2.10External closing pair is C 1040-G 2480
Stack -1.00External closing pair is T 1041-G 2479
Helix -5.60 4 base pairs.
Interior loop 1.40External closing pair is A 1042-T 2478
Stack -0.90External closing pair is T 1045-A 2475
Stack -1.30External closing pair is T 1046-A 2474
Helix -2.20 3 base pairs.
Bulge loop 3.80External closing pair is T 1047-G 2473
Stack -0.90External closing pair is T 1050-A 2472
Stack -2.40External closing pair is T 1051-A 2471
Stack -2.10External closing pair is C 1052-G 2470
Stack -1.00External closing pair is T 1053-A 2469
Stack -2.50External closing pair is G 1054-T 2468
Stack -3.30External closing pair is C 1055-G 2467
Stack -2.10External closing pair is C 1056-G 2466
Stack -1.10External closing pair is A 1057-T 2465
Stack -0.90External closing pair is T 1058-A 2464
Stack -0.90External closing pair is T 1059-A 2463
Helix -17.20 11 base pairs.
Interior loop 3.70External closing pair is T 1060-A 2462
Stack -2.40External closing pair is T 1063-A 2458
Stack -2.10External closing pair is C 1064-G 2457
Stack -0.90External closing pair is A 1065-T 2456
Helix -5.40 4 base pairs.
Interior loop 1.10External closing pair is A 1066-T 2455
Stack -2.40External closing pair is G 1068-C 2453
Helix -2.40 2 base pairs.
Multi-loop 1.40External closing pair is A 1069-T 2452
10 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -2.20External closing pair is G 2233-C 2427
Stack -0.90External closing pair is T 2234-A 2426
Stack -2.40External closing pair is T 2235-A 2425
Stack -1.40External closing pair is C 2236-G 2424
Stack -1.40External closing pair is G 2237-T 2423
Helix -8.30 6 base pairs.
Interior loop 2.00External closing pair is T 2238-A 2422
Stack -3.30External closing pair is C 2241-G 2420
Stack -3.30External closing pair is C 2242-G 2419
Helix -6.60 3 base pairs.
Multi-loop 1.10External closing pair is C 2243-G 2418
21 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 2406-G 2413
Helix -2.40 2 base pairs.
Hairpin loop 0.20Closing pair is G 2407-C 2412
Stack -2.10External closing pair is C 2246-G 2390
Stack -1.30External closing pair is T 2247-A 2389
Helix -3.40 3 base pairs.
Bulge loop 3.20External closing pair is T 2248-G 2388
Stack -1.30External closing pair is T 2249-A 2386
Stack -0.90External closing pair is A 2250-T 2385
Helix -2.20 3 base pairs.
Interior loop 1.50External closing pair is A 2251-T 2384
Stack -0.90External closing pair is A 2253-T 2382
Stack -2.10External closing pair is A 2254-T 2381
Helix -3.00 3 base pairs.
Interior loop 1.60External closing pair is G 2255-C 2380
Stack -1.40External closing pair is T 2262-G 2374
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -15.70 7 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -2.50External closing pair is G 1071-T 2231
Stack -2.10External closing pair is C 1072-G 2230
Stack -2.10External closing pair is T 1073-A 2229
Stack -3.30External closing pair is G 1074-C 2228
Helix -10.00 5 base pairs.
Multi-loop 2.90External closing pair is G 1075-C 2227
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1174-C 2226
Stack -3.30External closing pair is C 1175-G 2225
Stack -2.10External closing pair is C 1176-G 2224
Stack -2.40External closing pair is T 1177-A 2223
Helix -11.20 5 base pairs.
Bulge loop 1.70External closing pair is C 1178-G 2222
Stack -2.10External closing pair is A 1179-T 2220
Helix -2.10 2 base pairs.
Multi-loop 2.00External closing pair is G 1180-C 2219
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1209-A 2215
Stack -1.40External closing pair is A 1210-T 2214
Stack -1.50External closing pair is T 1211-G 2213
Stack -2.10External closing pair is C 1212-G 2212
Stack -1.10External closing pair is A 1213-T 2211
Stack -1.30External closing pair is T 1214-A 2210
Helix -8.70 7 base pairs.
Interior loop 3.80External closing pair is T 1215-G 2209
Stack -2.10External closing pair is T 1217-A 2206
Stack -3.30External closing pair is G 1218-C 2205
Helix -5.40 3 base pairs.
Interior loop 0.10External closing pair is G 1219-C 2204
Stack -0.90External closing pair is A 1222-T 2201
Stack -0.90External closing pair is A 1223-T 2200
Stack -0.60External closing pair is A 1224-T 2199
Stack -2.50External closing pair is G 1225-T 2198
Helix -4.90 5 base pairs.
Multi-loop 1.10External closing pair is C 1226-G 2197
13 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2156-C 2195
Helix -2.20 2 base pairs.
Interior loop 1.10External closing pair is T 2157-A 2194
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -1.00External closing pair is T 1236-A 2152
Stack -2.10External closing pair is G 1237-T 2151
Helix -3.10 3 base pairs.
Bulge loop 0.40External closing pair is G 1238-C 2150
Stack -2.10External closing pair is C 1240-G 2149
Helix -2.10 2 base pairs.
Interior loop 2.00External closing pair is T 1241-A 2148
Stack -3.40External closing pair is G 1245-C 2144
Stack -2.10External closing pair is C 1246-G 2143
Helix -5.50 3 base pairs.
Interior loop 1.10External closing pair is T 1247-G 2142
Stack -2.10External closing pair is C 1249-G 2140
Stack -1.00External closing pair is T 1250-A 2139
Stack -1.30External closing pair is G 1251-T 2138
Helix -4.40 4 base pairs.
Interior loop 1.00External closing pair is A 1252-T 2137
Stack -2.10External closing pair is C 1254-G 2135
Stack -0.90External closing pair is A 1255-T 2134
Stack -2.20External closing pair is A 1256-T 2133
Stack -3.30External closing pair is C 1257-G 2132
Stack -2.10External closing pair is C 1258-G 2131
Stack -0.90External closing pair is T 1259-A 2130
Stack -1.30External closing pair is T 1260-A 2129
Helix -12.80 8 base pairs.
Multi-loop 2.60External closing pair is T 1261-G 2128
9 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 2041-C 2120
Stack -1.50External closing pair is T 2042-G 2119
Stack -2.10External closing pair is C 2043-G 2118
Stack -1.10External closing pair is A 2044-T 2117
Helix -7.20 5 base pairs.
Interior loop 1.10External closing pair is T 2045-A 2116
Stack -3.30External closing pair is G 2047-C 2114
Helix -3.30 2 base pairs.
Multi-loop 2.80External closing pair is G 2048-C 2113
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -1.40External closing pair is G 1264-T 2040
Stack -0.90External closing pair is T 1265-A 2039
Stack -0.90External closing pair is T 1266-A 2038
Stack -0.90External closing pair is T 1267-A 2037
Stack -2.40External closing pair is T 1268-A 2036
Stack -2.10External closing pair is C 1269-G 2035
Stack -2.20External closing pair is A 1270-T 2034
Stack -2.10External closing pair is C 1271-G 2033
Stack -2.10External closing pair is A 1272-T 2032
Helix -15.00 10 base pairs.
Bulge loop 1.30External closing pair is G 1273-C 2031
Stack -1.00External closing pair is T 1275-G 2030
Stack -0.90External closing pair is A 1276-T 2029
Stack -2.10External closing pair is A 1277-T 2028
Stack -2.50External closing pair is G 1278-C 2027
Stack -0.60External closing pair is T 1279-G 2026
Helix -7.10 6 base pairs.
Multi-loop 1.50External closing pair is T 1280-A 2025
16 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 1378-C 2016
Stack -1.40External closing pair is T 1379-G 2015
Stack -2.40External closing pair is G 1380-C 2014
Stack -1.10External closing pair is A 1381-T 2013
Stack -2.40External closing pair is T 1382-A 2012
Stack -2.10External closing pair is C 1383-G 2011
Stack -1.10External closing pair is A 1384-T 2010
Helix -13.00 8 base pairs.
Multi-loop 3.50External closing pair is T 1385-A 2009
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1937-C 1995
Stack -0.90External closing pair is A 1938-T 1994
Helix -3.30 3 base pairs.
Interior loop 1.10External closing pair is A 1939-T 1993
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 1387-A 1936
Stack -3.30External closing pair is C 1388-G 1935
Helix -5.70 3 base pairs.
Multi-loop 1.90External closing pair is C 1389-G 1934
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1414-G 1924
Stack -2.40External closing pair is C 1415-G 1923
Stack -3.40External closing pair is G 1416-C 1922
Helix -9.10 4 base pairs.
Multi-loop 2.90External closing pair is C 1417-G 1921
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 1853-G 1919
Stack -2.40External closing pair is G 1854-C 1918
Helix -4.80 3 base pairs.
Interior loop 3.70External closing pair is A 1855-T 1917
Stack -2.10External closing pair is T 1860-A 1912
Stack -2.20External closing pair is G 1861-C 1911
Stack -2.40External closing pair is T 1862-A 1910
Helix -6.70 4 base pairs.
Interior loop -1.00External closing pair is C 1863-G 1909
Stack -2.40External closing pair is T 1865-A 1907
Helix -2.40 2 base pairs.
Multi-loop 0.10External closing pair is C 1866-G 1906
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1898
Stack -2.40External closing pair is T 1888-A 1897
Helix -3.30 3 base pairs.
Hairpin loop 4.40Closing pair is C 1889-G 1896
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.20External closing pair is A 1427-T 1850
Stack -3.30External closing pair is C 1428-G 1849
Helix -5.50 3 base pairs.
Bulge loop 1.70External closing pair is C 1429-G 1848
Stack -2.40External closing pair is T 1431-A 1847
Stack -2.10External closing pair is C 1432-G 1846
Stack -2.10External closing pair is A 1433-T 1845
Helix -6.60 4 base pairs.
Interior loop 3.70External closing pair is G 1434-C 1844
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -8.80 6 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is T 1284-A 1372
Stack -3.40External closing pair is G 1285-C 1371
Stack -2.10External closing pair is C 1286-G 1370
Helix -7.60 4 base pairs.
Multi-loop 3.30External closing pair is T 1287-A 1369
21 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1333-G 1361
Stack -2.10External closing pair is C 1334-G 1360
Stack -0.90External closing pair is A 1335-T 1359
Helix -6.30 4 base pairs.
Bulge loop 4.60External closing pair is A 1336-T 1358
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -3.30External closing pair is C 1183-G 1207
Stack -2.10External closing pair is C 1184-G 1206
Stack -2.20External closing pair is A 1185-T 1205
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is C 1186-G 1204
Stack -2.40External closing pair is T 1085-A 1169
Stack -2.10External closing pair is C 1086-G 1168
Stack -1.10External closing pair is A 1087-T 1167
Stack -1.30External closing pair is T 1088-A 1166
Stack -1.50External closing pair is T 1089-G 1165
Helix -8.40 6 base pairs.
Multi-loop -0.60External closing pair is C 1090-G 1164
25 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 1132-C 1148
Stack -0.60External closing pair is T 1133-G 1147
Stack -2.10External closing pair is T 1134-A 1146
Stack -2.20External closing pair is G 1135-C 1145
Helix -7.40 5 base pairs.
Hairpin loop 5.90Closing pair is T 1136-A 1144
Stack -3.30External closing pair is C 1100-G 1130
Stack -2.40External closing pair is C 1101-G 1129
Stack -2.20External closing pair is G 1102-C 1128
Stack -2.40External closing pair is T 1103-A 1127
Helix -10.30 5 base pairs.
Interior loop 1.10External closing pair is C 1104-G 1126
Stack -2.40External closing pair is T 1106-A 1124
Helix -2.40 2 base pairs.
Interior loop 0.90External closing pair is C 1107-G 1123
Stack -2.10External closing pair is C 1111-G 1119
Stack -0.60External closing pair is A 1112-T 1118
Helix -2.70 3 base pairs.
Hairpin loop 6.20Closing pair is G 1113-T 1117
Stack -2.20External closing pair is A 1006-T 1036
Stack -2.10External closing pair is C 1007-G 1035
Helix -4.30 3 base pairs.
Interior loop 2.60External closing pair is A 1008-T 1034
Stack -3.40External closing pair is G 1014-C 1030
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1015-G 1029
Stack -2.10External closing pair is A 1017-T 1027
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -5.60 4 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.40External closing pair is T 178-A 969
Stack -2.10External closing pair is C 179-G 968
Stack -1.30External closing pair is T 180-A 967
Helix -5.80 4 base pairs.
Bulge loop 1.60External closing pair is A 181-T 966
Stack -2.10External closing pair is C 182-G 964
Stack -1.10External closing pair is A 183-T 963
Stack -1.30External closing pair is T 184-A 962
Helix -4.50 4 base pairs.
Interior loop 1.40External closing pair is A 185-T 961
Stack -1.30External closing pair is T 188-A 958
Helix -1.30 2 base pairs.
Bulge loop 1.70External closing pair is A 189-T 957
Stack -3.40External closing pair is G 191-C 956
Stack -2.10External closing pair is C 192-G 955
Stack -1.40External closing pair is A 193-T 954
Stack -1.00External closing pair is T 194-G 953
Helix -7.90 5 base pairs.
Multi-loop 4.40External closing pair is A 195-T 952
5 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 893-A 951
Stack -1.50External closing pair is T 894-G 950
Stack -2.10External closing pair is C 895-G 949
Stack -0.90External closing pair is A 896-T 948
Helix -5.80 5 base pairs.
Bulge loop 1.70External closing pair is A 897-T 947
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is A 197-T 888
Stack -3.40External closing pair is G 198-C 887
Stack -3.30External closing pair is C 199-G 886
Helix -8.80 4 base pairs.
Multi-loop 2.80External closing pair is C 200-G 885
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 582-A 871
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -15.30 8 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 38
seq.txt
ΔG = -805.50

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 2.30External closing pair is G 46-C 3102
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 82-G 3087
Helix -2.10 2 base pairs.
Interior loop 2.20External closing pair is A 83-T 3086
Stack -2.40External closing pair is T 86-A 3083
Stack -2.10External closing pair is C 87-G 3082
Stack -1.10External closing pair is A 88-T 3081
Stack -0.90External closing pair is T 89-A 3080
Stack -2.10External closing pair is T 90-A 3079
Helix -8.60 6 base pairs.
Bulge loop 3.70External closing pair is G 91-C 3078
Stack -0.90External closing pair is T 92-A 3074
Stack -2.10External closing pair is T 93-A 3073
Stack -2.20External closing pair is G 94-C 3072
Stack -0.90External closing pair is T 95-A 3071
Helix -6.10 5 base pairs.
Bulge loop 3.80External closing pair is T 96-A 3070
Stack -2.10External closing pair is T 99-A 3069
Stack -2.20External closing pair is G 100-C 3068
Stack -0.90External closing pair is T 101-A 3067
Stack -0.90External closing pair is T 102-A 3066
Stack -0.90External closing pair is T 103-A 3065
Stack -1.30External closing pair is T 104-A 3064
Stack -1.40External closing pair is A 105-T 3063
Helix -9.70 8 base pairs.
Multi-loop 4.00External closing pair is T 106-G 3062
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 3024-A 3058
Helix -2.10 2 base pairs.
Interior loop 1.90External closing pair is G 3025-C 3057
Stack -2.10External closing pair is G 3028-T 3054
Stack -2.20External closing pair is G 3029-C 3053
Stack -2.40External closing pair is T 3030-A 3052
Stack -2.10External closing pair is C 3031-G 3051
Helix -8.80 5 base pairs.
Interior loop 2.20External closing pair is A 3032-T 3050
Stack -2.10External closing pair is T 3035-A 3047
Stack -3.30External closing pair is G 3036-C 3046
Stack -2.50External closing pair is G 3037-C 3045
Helix -7.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 3038-G 3044
Stack -1.30External closing pair is G 108-T 3021
Stack -2.10External closing pair is A 109-T 3020
Stack -2.20External closing pair is G 110-C 3019
Stack -2.10External closing pair is T 111-A 3018
Stack -3.40External closing pair is G 112-C 3017
Helix -11.10 6 base pairs.
Multi-loop 1.80External closing pair is C 113-G 3016
20 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 250-C 3014
Helix -2.40 2 base pairs.
Bulge loop 2.40External closing pair is A 251-T 3013
Stack -1.00External closing pair is T 252-G 3011
Stack -2.20External closing pair is A 253-T 3010
Stack -2.10External closing pair is C 254-G 3009
Helix -5.30 4 base pairs.
Interior loop 1.70External closing pair is A 255-T 3008
Stack -2.10External closing pair is G 257-T 3006
Stack -2.40External closing pair is G 258-C 3005
Helix -4.50 3 base pairs.
Interior loop 2.20External closing pair is A 259-T 3004
Stack -1.30External closing pair is T 262-A 2999
Stack -1.00External closing pair is T 263-G 2998
Stack -2.20External closing pair is A 264-T 2997
Helix -4.50 4 base pairs.
Bulge loop 0.50External closing pair is C 265-G 2996
Stack -2.10External closing pair is C 267-G 2995
Stack -2.10External closing pair is A 268-T 2994
Stack -3.40External closing pair is G 269-C 2993
Stack -2.10External closing pair is C 270-G 2992
Helix -9.70 5 base pairs.
Multi-loop 1.40External closing pair is T 271-G 2991
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 277-C 2706
Stack -0.90External closing pair is A 278-T 2705
Stack -0.60External closing pair is A 279-T 2704
Stack -2.50External closing pair is G 280-T 2703
Stack -3.30External closing pair is C 281-G 2702
Stack -1.40External closing pair is C 282-G 2701
Stack -2.50External closing pair is G 283-T 2700
Stack -3.30External closing pair is C 284-G 2699
Stack -1.40External closing pair is C 285-G 2698
Stack -1.30External closing pair is G 286-T 2697
Stack -1.40External closing pair is A 287-T 2696
Stack -1.00External closing pair is T 288-G 2695
Helix -22.00 13 base pairs.
Interior loop 7.90External closing pair is A 289-T 2694
Stack -1.40External closing pair is G 315-T 2692
Stack -2.40External closing pair is T 316-A 2691
Stack -2.10External closing pair is C 317-G 2690
Stack -1.00External closing pair is T 318-G 2689
Helix -6.90 5 base pairs.
Bulge loop 1.60External closing pair is A 319-T 2688
Stack -3.30External closing pair is C 320-G 2686
Stack -2.10External closing pair is C 321-G 2685
Stack -1.10External closing pair is A 322-T 2684
Helix -6.50 4 base pairs.
Multi-loop 0.60External closing pair is T 323-A 2683
5 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 545-C 2681
Stack -2.40External closing pair is C 546-G 2680
Helix -5.80 3 base pairs.
Interior loop 1.10External closing pair is G 547-C 2679
Stack -1.10External closing pair is A 549-T 2677
Stack -1.30External closing pair is T 550-A 2676
Helix -2.40 3 base pairs.
Interior loop -2.90External closing pair is T 551-G 2675
Stack -1.40External closing pair is A 554-T 2672
Stack -1.50External closing pair is T 555-G 2671
Stack -2.10External closing pair is C 556-G 2670
Helix -5.00 4 base pairs.
Bulge loop 1.70External closing pair is A 557-T 2669
Stack -2.20External closing pair is G 558-C 2667
Stack -0.90External closing pair is T 559-A 2666
Stack -2.40External closing pair is T 560-A 2665
Helix -5.50 4 base pairs.
Multi-loop 2.20External closing pair is C 561-G 2664
20 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.10External closing pair is T 566-A 1944
Stack -2.50External closing pair is G 567-C 1943
Stack -0.50External closing pair is T 568-G 1942
Stack -0.60External closing pair is T 569-G 1941
Helix -5.70 5 base pairs.
Interior loop 1.70External closing pair is T 570-A 1940
Stack -2.40External closing pair is T 572-A 1938
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 573-G 1937
Stack -2.40External closing pair is T 575-A 1936
Stack -3.30External closing pair is C 576-G 1935
Stack -2.10External closing pair is C 577-G 1934
Stack -1.30External closing pair is T 578-A 1933
Stack -0.60External closing pair is A 579-T 1932
Stack -2.50External closing pair is G 580-T 1931
Stack -2.10External closing pair is C 581-G 1930
Stack -1.00External closing pair is T 582-A 1929
Helix -15.30 9 base pairs.
Interior loop 3.00External closing pair is G 583-T 1928
Stack -2.20External closing pair is A 587-T 1925
Stack -3.30External closing pair is C 588-G 1924
Helix -5.50 3 base pairs.
Multi-loop 0.70External closing pair is C 589-G 1923
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1911-G 1921
Stack -2.20External closing pair is A 1912-T 1920
Helix -4.30 3 base pairs.
Hairpin loop 4.10Closing pair is C 1913-G 1919
Stack -2.10External closing pair is C 593-G 1908
Stack -2.40External closing pair is T 594-A 1907
Stack -2.10External closing pair is C 595-G 1906
Helix -6.60 4 base pairs.
Interior loop 0.80External closing pair is T 596-A 1905
Stack -0.90External closing pair is T 599-A 1902
Stack -0.90External closing pair is T 600-A 1901
Helix -1.80 3 base pairs.
Interior loop 4.40External closing pair is T 601-A 1900
Stack -2.40External closing pair is T 606-A 1897
Stack -2.10External closing pair is C 607-G 1896
Stack -2.40External closing pair is T 608-A 1895
Stack -2.10External closing pair is C 609-G 1894
Stack -1.00External closing pair is T 610-A 1893
Helix -10.00 6 base pairs.
Bulge loop 6.50External closing pair is G 611-T 1892
Stack -0.90External closing pair is T 612-A 1874
Stack -1.00External closing pair is T 613-A 1873
Stack -2.50External closing pair is G 614-T 1872
Stack -3.30External closing pair is C 615-G 1871
Helix -7.70 5 base pairs.
Bulge loop 1.40External closing pair is C 616-G 1870
Stack -2.20External closing pair is G 618-C 1869
Stack -0.90External closing pair is T 619-A 1868
Helix -3.10 3 base pairs.
Interior loop 4.00External closing pair is T 620-A 1867
Stack -1.40External closing pair is A 623-T 1865
Stack -1.40External closing pair is T 624-G 1864
Stack -2.40External closing pair is G 625-C 1863
Stack -2.20External closing pair is A 626-T 1862
Stack -2.10External closing pair is C 627-G 1861
Helix -9.50 6 base pairs.
Multi-loop 4.10External closing pair is A 628-T 1860
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1792-A 1855
Stack -2.40External closing pair is C 1793-G 1854
Stack -2.40External closing pair is G 1794-C 1853
Stack -0.90External closing pair is A 1795-T 1852
Helix -8.10 5 base pairs.
Bulge loop 3.80External closing pair is A 1796-T 1851
Stack -0.60External closing pair is T 1797-G 1848
Stack -1.30External closing pair is T 1798-A 1847
Stack -1.00External closing pair is T 1799-G 1846
Stack -2.10External closing pair is A 1800-T 1845
Stack -2.20External closing pair is G 1801-C 1844
Stack -1.00External closing pair is T 1802-A 1843
Helix -8.20 7 base pairs.
Interior loop 2.60External closing pair is G 1803-T 1842
Stack -1.30External closing pair is T 1808-A 1837
Stack -1.00External closing pair is T 1809-G 1836
Stack -1.10External closing pair is A 1810-T 1835
Stack -2.10External closing pair is T 1811-A 1834
Helix -5.50 5 base pairs.
Hairpin loop 4.80Closing pair is G 1812-C 1833
Stack -1.30External closing pair is G 630-T 1789
Stack -2.10External closing pair is A 631-T 1788
Stack -3.30External closing pair is G 632-C 1787
Stack -2.40External closing pair is G 633-C 1786
Helix -9.10 5 base pairs.
Bulge loop 4.10External closing pair is A 634-T 1785
Stack -2.40External closing pair is C 639-G 1784
Stack -3.30External closing pair is G 640-C 1783
Stack -2.40External closing pair is G 641-C 1782
Stack -1.10External closing pair is A 642-T 1781
Helix -9.20 5 base pairs.
Interior loop 3.10External closing pair is T 643-A 1780
Stack -2.20External closing pair is G 648-C 1773
Stack -1.30External closing pair is T 649-A 1772
Stack -0.50External closing pair is T 650-G 1771
Stack -0.60External closing pair is T 651-G 1770
Stack -2.10External closing pair is T 652-A 1769
Stack -3.30External closing pair is G 653-C 1768
Helix -10.00 7 base pairs.
Multi-loop 4.00External closing pair is G 654-C 1767
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 676-T 1765
Stack -2.20External closing pair is A 677-T 1764
Stack -2.10External closing pair is C 678-G 1763
Stack -2.40External closing pair is T 679-A 1762
Helix -7.60 5 base pairs.
Interior loop 2.70External closing pair is C 680-G 1761
Stack -3.40External closing pair is G 682-C 1757
Stack -2.10External closing pair is C 683-G 1756
Stack -1.10External closing pair is A 684-T 1755
Helix -6.60 4 base pairs.
Bulge loop 3.80External closing pair is T 685-A 1754
Stack -2.50External closing pair is G 686-T 1751
Stack -2.40External closing pair is C 687-G 1750
Stack -3.40External closing pair is G 688-C 1749
Stack -2.10External closing pair is C 689-G 1748
Stack -1.10External closing pair is A 690-T 1747
Helix -11.50 6 base pairs.
Multi-loop 4.10External closing pair is T 691-A 1746
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.30External closing pair is T 692-A 1716
Stack -1.10External closing pair is A 693-T 1715
Stack -1.30External closing pair is T 694-A 1714
Stack -1.10External closing pair is A 695-T 1713
Stack -1.30External closing pair is T 696-A 1712
Stack -0.60External closing pair is T 697-G 1711
Helix -6.70 7 base pairs.
Interior loop 1.70External closing pair is T 698-A 1710
Stack -2.40External closing pair is T 700-A 1708
Stack -2.40External closing pair is C 701-G 1707
Stack -3.40External closing pair is G 702-C 1706
Helix -8.20 4 base pairs.
Interior loop 0.40External closing pair is C 703-G 1705
Stack -2.20External closing pair is G 705-C 1703
Helix -2.20 2 base pairs.
Bulge loop 1.40External closing pair is T 706-A 1702
Stack -2.10External closing pair is C 708-G 1701
Stack -2.20External closing pair is A 709-T 1700
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 710-G 1699
14 ss bases & 5 closing helices.
Stack -2.40External closing pair is G 1648-C 1696
Stack -2.10External closing pair is A 1649-T 1695
Stack -2.20External closing pair is G 1650-C 1694
Stack -0.90External closing pair is T 1651-A 1693
Stack -0.90External closing pair is T 1652-A 1692
Stack -1.30External closing pair is T 1653-A 1691
Helix -9.80 7 base pairs.
Bulge loop 4.50External closing pair is T 1654-G 1690
Stack -2.10External closing pair is C 1655-G 1684
Stack -2.10External closing pair is A 1656-T 1683
Stack -2.40External closing pair is G 1657-C 1682
Stack -0.90External closing pair is A 1658-T 1681
Helix -7.50 5 base pairs.
Bulge loop 4.10External closing pair is A 1659-T 1680
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1071-C 1630
Stack -2.10External closing pair is C 1072-G 1629
Stack -2.10External closing pair is T 1073-A 1628
Stack -1.50External closing pair is G 1074-C 1627
Stack -1.30External closing pair is G 1075-T 1626
Helix -10.40 6 base pairs.
Bulge loop 4.20External closing pair is A 1076-T 1625
Stack -1.00External closing pair is T 1080-G 1624
Stack -0.90External closing pair is A 1081-T 1623
Stack -2.20External closing pair is A 1082-T 1622
Stack -2.10External closing pair is C 1083-G 1621
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is A 1084-T 1620
Stack -2.40External closing pair is T 1089-A 1616
Stack -2.10External closing pair is C 1090-G 1615
Helix -4.50 3 base pairs.
Interior loop 0.80External closing pair is A 1091-T 1614
Stack -2.40External closing pair is G 1094-C 1611
Stack -1.10External closing pair is A 1095-T 1610
Stack -2.40External closing pair is T 1096-A 1609
Helix -5.90 4 base pairs.
Multi-loop 0.50External closing pair is C 1097-G 1608
23 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1117-A 1593
Stack -2.10External closing pair is T 1118-A 1592
Stack -3.30External closing pair is G 1119-C 1591
Stack -2.40External closing pair is G 1120-C 1590
Stack -0.90External closing pair is A 1121-T 1589
Stack -2.10External closing pair is A 1122-T 1588
Helix -11.70 7 base pairs.
Multi-loop 0.50External closing pair is G 1123-C 1587
17 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1364-T 1579
Stack -2.40External closing pair is T 1365-A 1578
Stack -2.10External closing pair is C 1366-G 1577
Helix -5.60 4 base pairs.
Multi-loop 2.50External closing pair is T 1367-G 1576
13 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -0.90External closing pair is T 720-A 1070
Stack -1.30External closing pair is T 721-A 1069
Stack -1.00External closing pair is T 722-G 1068
Stack -1.10External closing pair is A 723-T 1067
Stack -0.90External closing pair is T 724-A 1066
Stack -2.10External closing pair is T 725-A 1065
Stack -2.40External closing pair is G 726-C 1064
Helix -9.70 8 base pairs.
Interior loop 1.70External closing pair is A 727-T 1063
Stack -1.30External closing pair is G 729-T 1061
Stack -0.90External closing pair is A 730-T 1060
Stack -0.90External closing pair is A 731-T 1059
Helix -3.10 4 base pairs.
Interior loop 2.50External closing pair is A 732-T 1058
Stack -3.30External closing pair is G 735-C 1056
Stack -3.40External closing pair is G 736-C 1055
Helix -6.70 3 base pairs.
Multi-loop 1.60External closing pair is C 737-G 1054
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -1.30External closing pair is T 746-A 772
Stack -0.90External closing pair is A 747-T 771
Stack -0.60External closing pair is A 748-T 770
Stack -1.40External closing pair is G 749-T 769
Helix -4.20 5 base pairs.
Interior loop 3.70External closing pair is T 750-A 768
Stack -1.00External closing pair is T 752-A 765
Stack -2.10External closing pair is G 753-T 764
Stack -2.20External closing pair is G 754-C 763
Stack -2.40External closing pair is T 755-A 762
Helix -7.70 5 base pairs.
Hairpin loop 4.20Closing pair is C 756-G 761
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -2.20External closing pair is G 326-C 542
Stack -0.90External closing pair is T 327-A 541
Stack -0.90External closing pair is T 328-A 540
Helix -4.00 4 base pairs.
Multi-loop 3.00External closing pair is T 329-A 539
5 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 373-C 537
Stack -0.90External closing pair is T 374-A 536
Stack -1.30External closing pair is T 375-A 535
Helix -4.40 4 base pairs.
Interior loop 3.60External closing pair is A 376-T 534
Stack -2.10External closing pair is T 384-A 527
Stack -2.50External closing pair is G 385-C 526
Stack -0.60External closing pair is T 386-G 525
Helix -5.20 4 base pairs.
Interior loop 2.30External closing pair is T 387-A 524
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.40External closing pair is G 132-C 248
Stack -2.20External closing pair is A 133-T 247
Stack -2.10External closing pair is C 134-G 246
Stack -2.20External closing pair is A 135-T 245
Stack -2.10External closing pair is C 136-G 244
Helix -11.00 6 base pairs.
Interior loop 4.30External closing pair is A 137-T 243
Stack -2.20External closing pair is A 143-T 238
Stack -3.30External closing pair is C 144-G 237
Stack -2.10External closing pair is C 145-G 236
Helix -7.60 4 base pairs.
Multi-loop 2.60External closing pair is T 146-A 235
28 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 191-C 222
Stack -2.10External closing pair is C 192-G 221
Stack -1.10External closing pair is A 193-T 220
Helix -6.60 4 base pairs.
Interior loop 3.60External closing pair is T 194-A 219
Stack -1.40External closing pair is C 200-G 214
Stack -0.50External closing pair is G 201-T 213
Stack -1.30External closing pair is G 202-T 212
Stack -1.40External closing pair is A 203-T 211
Helix -4.60 5 base pairs.
Hairpin loop 4.90Closing pair is T 204-G 210
Stack -1.00External closing pair is T 154-A 181
Stack -2.10External closing pair is G 155-T 180
Stack -2.40External closing pair is G 156-C 179
Stack -0.90External closing pair is A 157-T 178
Helix -6.40 5 base pairs.
Bulge loop 3.20External closing pair is A 158-T 177
Stack -2.50External closing pair is G 159-T 175
Stack -2.10External closing pair is C 160-G 174
Stack -2.10External closing pair is T 161-A 173
Stack -1.50External closing pair is G 162-C 172
Helix -8.20 5 base pairs.
Hairpin loop 6.10Closing pair is G 163-T 171
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 39
seq.txt
ΔG = -805.30

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 1.60External closing pair is G 67-C 2934
17 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1123-C 2929
Stack -2.10External closing pair is A 1124-T 2928
Stack -3.30External closing pair is G 1125-C 2927
Stack -2.40External closing pair is G 1126-C 2926
Stack -2.20External closing pair is A 1127-T 2925
Helix -12.40 6 base pairs.
Multi-loop -2.50External closing pair is C 1128-G 2924
27 ss bases & 5 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.50External closing pair is G 1132-C 1148
Stack -0.60External closing pair is T 1133-G 1147
Stack -2.10External closing pair is T 1134-A 1146
Stack -2.20External closing pair is G 1135-C 1145
Helix -7.40 5 base pairs.
Hairpin loop 5.90Closing pair is T 1136-A 1144
Stack -2.40External closing pair is T 80-A 1121
Stack -3.30External closing pair is C 81-G 1120
Stack -2.10External closing pair is C 82-G 1119
Helix -7.80 4 base pairs.
Interior loop 3.00External closing pair is A 83-T 1118
Stack -2.20External closing pair is G 85-C 1115
Stack -2.40External closing pair is T 86-A 1114
Helix -4.60 3 base pairs.
Multi-loop 0.40External closing pair is C 87-G 1113
5 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.20External closing pair is G 91-C 1100
Stack -0.90External closing pair is T 92-A 1099
Stack -2.10External closing pair is T 93-A 1098
Helix -5.20 4 base pairs.
Interior loop 0.50External closing pair is G 94-C 1097
Stack -2.10External closing pair is C 98-G 1094
Stack -2.10External closing pair is T 99-A 1093
Stack -2.20External closing pair is G 100-C 1092
Helix -6.40 4 base pairs.
Multi-loop 2.90External closing pair is T 101-A 1091
31 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 832-A 1077
Stack -2.40External closing pair is T 833-A 1076
Stack -3.30External closing pair is C 834-G 1075
Stack -2.10External closing pair is C 835-G 1074
Helix -8.70 5 base pairs.
Multi-loop 3.50External closing pair is A 836-T 1073
5 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1056-G 1068
Stack -1.10External closing pair is A 1057-T 1067
Stack -0.90External closing pair is T 1058-A 1066
Helix -4.10 4 base pairs.
Hairpin loop 5.50Closing pair is T 1059-A 1065
Stack -2.10External closing pair is C 837-G 1054
Stack -2.10External closing pair is A 838-T 1053
Stack -2.40External closing pair is G 839-C 1052
Stack -0.90External closing pair is A 840-T 1051
Stack -1.10External closing pair is A 841-T 1050
Helix -8.60 6 base pairs.
Interior loop 4.70External closing pair is T 842-A 1049
Stack -2.10External closing pair is A 844-T 1044
Stack -2.20External closing pair is G 845-C 1043
Stack -1.30External closing pair is T 846-A 1042
Helix -5.60 4 base pairs.
Interior loop 2.30External closing pair is A 847-T 1041
Stack -2.40External closing pair is G 850-C 1037
Stack -2.20External closing pair is A 851-T 1036
Stack -2.10External closing pair is C 852-G 1035
Stack -0.90External closing pair is A 853-T 1034
Stack -0.60External closing pair is A 854-T 1033
Stack -1.30External closing pair is G 855-T 1032
Helix -9.50 7 base pairs.
Interior loop 3.40External closing pair is A 856-T 1031
Stack -2.40External closing pair is C 863-G 1024
Stack -1.50External closing pair is G 864-C 1023
Helix -3.90 3 base pairs.
Bulge loop 2.50External closing pair is G 865-T 1022
Stack -0.90External closing pair is A 867-T 1021
Stack -0.60External closing pair is A 868-T 1020
Stack -2.50External closing pair is G 869-T 1019
Helix -4.00 4 base pairs.
Multi-loop 2.00External closing pair is C 870-G 1018
3 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 955-C 1015
Helix -3.40 2 base pairs.
Bulge loop 1.70External closing pair is C 956-G 1014
Stack -1.10External closing pair is A 958-T 1013
Helix -1.10 2 base pairs.
Interior loop 1.10External closing pair is T 959-A 1012
Stack -1.10External closing pair is A 962-T 1009
Stack -2.10External closing pair is T 963-A 1008
Helix -3.20 3 base pairs.
Bulge loop 1.60External closing pair is G 964-C 1007
Stack -1.30External closing pair is T 966-A 1006
Stack -2.10External closing pair is A 967-T 1005
Stack -2.40External closing pair is G 968-C 1004
Stack -2.20External closing pair is A 969-T 1003
Stack -2.10External closing pair is C 970-G 1002
Helix -10.10 6 base pairs.
Interior loop 3.10External closing pair is A 971-T 1001
Stack -1.40External closing pair is C 978-G 995
Stack -2.10External closing pair is G 979-T 994
Stack -2.40External closing pair is G 980-C 993
Helix -5.90 4 base pairs.
Hairpin loop 5.40Closing pair is A 981-T 992
Stack -2.20External closing pair is A 872-T 954
Stack -2.10External closing pair is C 873-G 953
Stack -1.10External closing pair is A 874-T 952
Stack -1.30External closing pair is T 875-A 951
Helix -6.70 5 base pairs.
Multi-loop 1.70External closing pair is T 876-G 950
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 1.90External closing pair is C 116-G 811
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -3.40External closing pair is G 118-C 796
Stack -2.10External closing pair is C 119-G 795
Stack -0.90External closing pair is T 120-A 794
Stack -1.30External closing pair is T 121-A 793
Helix -7.70 5 base pairs.
Multi-loop 3.90External closing pair is A 122-T 792
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -5.60 4 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -2.40External closing pair is T 127-A 762
Stack -3.30External closing pair is C 128-G 761
Stack -1.40External closing pair is C 129-G 760
Helix -7.10 4 base pairs.
Bulge loop 2.40External closing pair is G 130-T 759
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -6.70 4 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 40
seq.txt
ΔG = -804.80

Structural elementδGInformation
External loop -2.30 11 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1837-T 3134
Stack -1.10External closing pair is A 1838-T 3133
Stack -1.30External closing pair is T 1839-A 3132
Stack -0.90External closing pair is A 1840-T 3131
Stack -1.10External closing pair is A 1841-T 3130
Helix -5.30 6 base pairs.
Interior loop 1.10External closing pair is T 1842-A 3129
Stack -2.10External closing pair is C 1844-G 3127
Stack -2.10External closing pair is T 1845-A 3126
Stack -2.40External closing pair is G 1846-C 3125
Stack -2.10External closing pair is A 1847-T 3124
Stack -3.30External closing pair is G 1848-C 3123
Stack -2.20External closing pair is G 1849-C 3122
Stack -0.90External closing pair is T 1850-A 3121
Stack -0.90External closing pair is T 1851-A 3120
Helix -16.00 9 base pairs.
Multi-loop 4.60External closing pair is T 1852-A 3119
12 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 3105-T 3115
Stack -3.30External closing pair is G 3106-C 3114
Helix -5.40 3 base pairs.
Hairpin loop 2.70Closing pair is G 3107-C 3113
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1857-A 2665
Stack -2.10External closing pair is C 1858-G 2664
Stack -0.90External closing pair is T 1859-A 2663
Stack -2.10External closing pair is T 1860-A 2662
Helix -7.50 5 base pairs.
Multi-loop 1.40External closing pair is G 1861-C 2661
16 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1947-A 2649
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -10.60 7 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -2.50External closing pair is G 1864-C 1943
Stack -1.50External closing pair is T 1865-G 1942
Helix -4.00 3 base pairs.
Multi-loop 0.30External closing pair is C 1866-G 1941
10 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1887-A 1939
Stack -2.40External closing pair is T 1888-A 1938
Helix -3.30 3 base pairs.
Bulge loop 0.50External closing pair is C 1889-G 1937
Stack -2.10External closing pair is C 1890-G 1935
Stack -0.60External closing pair is T 1891-G 1934
Stack -1.30External closing pair is T 1892-A 1933
Stack -0.60External closing pair is A 1893-T 1932
Helix -4.60 5 base pairs.
Interior loop 0.50External closing pair is G 1894-T 1931
Stack -0.90External closing pair is A 1897-T 1928
Stack -0.90External closing pair is A 1898-T 1927
Stack -0.90External closing pair is A 1899-T 1926
Helix -2.70 4 base pairs.
Interior loop 1.60External closing pair is A 1900-T 1925
Stack -2.40External closing pair is G 1906-C 1918
Stack -2.10External closing pair is A 1907-T 1917
Helix -4.50 3 base pairs.
Hairpin loop 3.50Closing pair is G 1908-C 1916
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.20External closing pair is G 558-C 1833
Stack -0.90External closing pair is T 559-A 1832
Stack -2.40External closing pair is T 560-A 1831
Helix -5.50 4 base pairs.
Interior loop 2.20External closing pair is C 561-G 1830
Stack -0.90External closing pair is T 565-A 1824
Stack -2.10External closing pair is T 566-A 1823
Stack -2.20External closing pair is G 567-C 1822
Stack -0.90External closing pair is T 568-A 1821
Stack -1.30External closing pair is T 569-A 1820
Helix -7.40 6 base pairs.
Multi-loop 2.60External closing pair is T 570-G 1819
10 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is C 577-G 1529
Stack -1.30External closing pair is T 578-A 1528
Stack -0.60External closing pair is A 579-T 1527
Stack -2.50External closing pair is G 580-T 1526
Stack -2.10External closing pair is C 581-G 1525
Stack -2.10External closing pair is T 582-A 1524
Stack -3.40External closing pair is G 583-C 1523
Helix -14.10 8 base pairs.
Multi-loop 1.70External closing pair is C 584-G 1522
34 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.40External closing pair is G 611-T 1365
Stack -0.90External closing pair is T 612-A 1364
Stack -2.10External closing pair is T 613-A 1363
Stack -3.40External closing pair is G 614-C 1362
Stack -3.30External closing pair is C 615-G 1361
Helix -11.10 6 base pairs.
Multi-loop -0.30External closing pair is C 616-G 1360
28 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1334
Stack -2.20External closing pair is G 1303-C 1333
Stack -1.30External closing pair is T 1304-A 1332
Helix -6.80 4 base pairs.
Bulge loop 5.00External closing pair is A 1305-T 1331
Stack -1.30External closing pair is T 1306-A 1325
Helix -1.30 2 base pairs.
Interior loop 0.60External closing pair is A 1307-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 618-C 1299
Stack -0.90External closing pair is T 619-A 1298
Stack -0.90External closing pair is T 620-A 1297
Stack -1.30External closing pair is T 621-A 1296
Helix -5.30 5 base pairs.
Multi-loop 3.90External closing pair is A 622-T 1295
19 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1277-T 1287
Stack -2.50External closing pair is G 1278-C 1286
Helix -4.60 3 base pairs.
Hairpin loop 4.80Closing pair is T 1279-G 1285
Stack -1.30External closing pair is G 625-T 1266
Stack -2.20External closing pair is A 626-T 1265
Stack -2.10External closing pair is C 627-G 1264
Stack -1.10External closing pair is A 628-T 1263
Stack -1.00External closing pair is T 629-A 1262
Stack -1.30External closing pair is G 630-T 1261
Stack -0.60External closing pair is A 631-T 1260
Stack -2.10External closing pair is G 632-T 1259
Helix -11.70 9 base pairs.
Interior loop 3.40External closing pair is G 633-C 1258
Stack -1.10External closing pair is A 637-T 1253
Stack -2.40External closing pair is T 638-A 1252
Stack -1.40External closing pair is C 639-G 1251
Stack -2.10External closing pair is G 640-T 1250
Stack -2.40External closing pair is G 641-C 1249
Helix -9.40 6 base pairs.
Interior loop 2.10External closing pair is A 642-T 1248
Stack -2.10External closing pair is C 644-G 1245
Stack -0.90External closing pair is A 645-T 1244
Stack -0.90External closing pair is A 646-T 1243
Stack -0.60External closing pair is A 647-T 1242
Helix -4.50 5 base pairs.
Interior loop 1.40External closing pair is G 648-T 1241
Interior loop -2.90External closing pair is T 651-G 1238
Stack -1.40External closing pair is G 654-T 1235
Helix -1.40 2 base pairs.
Interior loop 4.50External closing pair is T 655-A 1234
Stack -3.40External closing pair is G 659-C 1226
Stack -2.10External closing pair is C 660-G 1225
Stack -0.90External closing pair is T 661-A 1224
Stack -0.90External closing pair is T 662-A 1223
Stack -0.90External closing pair is T 663-A 1222
Stack -2.40External closing pair is T 664-A 1221
Helix -10.60 7 base pairs.
Multi-loop 1.20External closing pair is C 665-G 1220
4 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1178-G 1218
Stack -2.10External closing pair is A 1179-T 1217
Stack -2.40External closing pair is G 1180-C 1216
Stack -0.90External closing pair is A 1181-T 1215
Helix -7.50 5 base pairs.
Bulge loop 4.90External closing pair is A 1182-T 1214
Stack -3.30External closing pair is C 1183-G 1207
Stack -2.10External closing pair is C 1184-G 1206
Stack -2.20External closing pair is A 1185-T 1205
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is C 1186-G 1204
Stack -3.40External closing pair is G 667-C 1175
Helix -3.40 2 base pairs.
Interior loop 0.90External closing pair is C 668-G 1174
Stack -0.90External closing pair is T 671-A 1171
Stack -0.90External closing pair is T 672-A 1170
Stack -2.40External closing pair is T 673-A 1169
Stack -2.10External closing pair is C 674-G 1168
Helix -6.30 5 base pairs.
Interior loop 0.10External closing pair is A 675-T 1167
Stack -2.10External closing pair is C 678-G 1164
Helix -2.10 2 base pairs.
Multi-loop 4.50External closing pair is T 679-A 1163
4 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 692-A 1160
Stack -1.10External closing pair is A 693-T 1159
Stack -1.30External closing pair is T 694-A 1158
Stack -1.10External closing pair is A 695-T 1157
Helix -4.80 5 base pairs.
Interior loop 2.70External closing pair is T 696-A 1156
Stack -1.30External closing pair is T 698-A 1153
Stack -1.10External closing pair is A 699-T 1152
Stack -2.40External closing pair is T 700-A 1151
Helix -4.80 4 base pairs.
Bulge loop 1.40External closing pair is C 701-G 1150
Stack -3.40External closing pair is G 702-C 1148
Stack -2.10External closing pair is C 703-G 1147
Stack -2.10External closing pair is T 704-A 1146
Stack -2.20External closing pair is G 705-C 1145
Stack -1.30External closing pair is T 706-A 1144
Helix -11.10 6 base pairs.
Interior loop 6.10External closing pair is A 707-T 1143
Stack -2.20External closing pair is A 709-T 1136
Stack -2.10External closing pair is C 710-G 1135
Stack -0.90External closing pair is A 711-T 1134
Stack -2.20External closing pair is A 712-T 1133
Stack -2.10External closing pair is C 713-G 1132
Stack -2.40External closing pair is T 714-A 1131
Helix -11.90 7 base pairs.
Interior loop 2.50External closing pair is C 715-G 1130
Stack -1.30External closing pair is T 720-A 1124
Stack -0.60External closing pair is T 721-G 1123
Helix -1.90 3 base pairs.
Interior loop 1.70External closing pair is T 722-A 1122
Interior loop -2.90External closing pair is T 724-G 1120
Stack -0.90External closing pair is A 727-T 1117
Stack -2.10External closing pair is A 728-T 1116
Helix -3.00 3 base pairs.
Multi-loop -0.60External closing pair is G 729-C 1115
32 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -3.30External closing pair is C 733-G 1075
Stack -1.40External closing pair is C 734-G 1074
Stack -2.10External closing pair is G 735-T 1073
Stack -3.40External closing pair is G 736-C 1072
Stack -2.10External closing pair is C 737-G 1071
Stack -0.90External closing pair is T 738-A 1070
Stack -2.40External closing pair is T 739-A 1069
Helix -15.60 8 base pairs.
Interior loop 1.10External closing pair is C 740-G 1068
Stack -0.90External closing pair is T 742-A 1066
Helix -0.90 2 base pairs.
Interior loop 1.70External closing pair is T 743-A 1065
Stack -1.30External closing pair is T 746-A 1062
Stack -0.90External closing pair is A 747-T 1061
Stack -0.60External closing pair is A 748-T 1060
Helix -2.80 4 base pairs.
Interior loop 2.70External closing pair is G 749-T 1059
Stack -2.10External closing pair is T 752-A 1057
Stack -3.30External closing pair is G 753-C 1056
Stack -2.50External closing pair is G 754-C 1055
Helix -7.90 4 base pairs.
Multi-loop 3.00External closing pair is T 755-G 1054
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -2.10External closing pair is T 759-A 768
Stack -3.30External closing pair is G 760-C 767
Helix -5.40 3 base pairs.
Hairpin loop 4.50Closing pair is G 761-C 766
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -1.40External closing pair is G 3-T 555
Stack -2.40External closing pair is T 4-A 554
Stack -2.10External closing pair is C 5-G 553
Helix -5.90 4 base pairs.
Interior loop 3.70External closing pair is A 6-T 552
Stack -0.90External closing pair is T 8-A 549
Stack -2.40External closing pair is T 9-A 548
Helix -3.30 3 base pairs.
Interior loop 0.50External closing pair is C 10-G 547
Stack -2.10External closing pair is C 12-G 545
Stack -1.30External closing pair is T 13-A 544
Helix -3.40 3 base pairs.
Multi-loop 2.00External closing pair is T 14-G 543
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 208-A 539
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -6.10 5 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253
Stack -2.10External closing pair is C 28-G 205
Stack -1.10External closing pair is A 29-T 204
Stack -1.30External closing pair is T 30-A 203
Stack -0.50External closing pair is T 31-G 202
Stack -1.40External closing pair is T 32-G 201
Stack -3.30External closing pair is G 33-C 200
Stack -2.50External closing pair is G 34-C 199
Helix -12.20 8 base pairs.
Multi-loop 2.50External closing pair is T 35-G 198
43 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 90-A 183
Stack -2.20External closing pair is G 91-C 182
Helix -4.30 3 base pairs.
Interior loop 2.70External closing pair is T 92-A 181
Stack -1.00External closing pair is T 96-A 176
Stack -2.50External closing pair is G 97-T 175
Stack -2.10External closing pair is C 98-G 174
Stack -2.10External closing pair is T 99-A 173
Helix -7.70 5 base pairs.
Interior loop 2.70External closing pair is G 100-C 172
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 41
seq.txt
ΔG = -804.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 2.30External closing pair is G 46-C 3102
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 82-G 3087
Helix -2.10 2 base pairs.
Interior loop 2.20External closing pair is A 83-T 3086
Stack -2.40External closing pair is T 86-A 3083
Stack -2.10External closing pair is C 87-G 3082
Stack -1.10External closing pair is A 88-T 3081
Stack -0.90External closing pair is T 89-A 3080
Stack -2.10External closing pair is T 90-A 3079
Helix -8.60 6 base pairs.
Bulge loop 3.70External closing pair is G 91-C 3078
Stack -0.90External closing pair is T 92-A 3074
Stack -2.10External closing pair is T 93-A 3073
Stack -2.20External closing pair is G 94-C 3072
Stack -0.90External closing pair is T 95-A 3071
Helix -6.10 5 base pairs.
Bulge loop 3.80External closing pair is T 96-A 3070
Stack -2.10External closing pair is T 99-A 3069
Stack -2.20External closing pair is G 100-C 3068
Stack -0.90External closing pair is T 101-A 3067
Stack -0.90External closing pair is T 102-A 3066
Stack -0.90External closing pair is T 103-A 3065
Stack -1.30External closing pair is T 104-A 3064
Stack -1.40External closing pair is A 105-T 3063
Helix -9.70 8 base pairs.
Multi-loop 4.00External closing pair is T 106-G 3062
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 3024-A 3058
Helix -2.10 2 base pairs.
Interior loop 1.90External closing pair is G 3025-C 3057
Stack -2.10External closing pair is G 3028-T 3054
Stack -2.20External closing pair is G 3029-C 3053
Stack -2.40External closing pair is T 3030-A 3052
Stack -2.10External closing pair is C 3031-G 3051
Helix -8.80 5 base pairs.
Interior loop 2.20External closing pair is A 3032-T 3050
Stack -2.10External closing pair is T 3035-A 3047
Stack -3.30External closing pair is G 3036-C 3046
Stack -2.50External closing pair is G 3037-C 3045
Helix -7.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 3038-G 3044
Stack -1.30External closing pair is G 108-T 3021
Stack -2.10External closing pair is A 109-T 3020
Stack -2.20External closing pair is G 110-C 3019
Stack -2.10External closing pair is T 111-A 3018
Stack -3.40External closing pair is G 112-C 3017
Helix -11.10 6 base pairs.
Multi-loop 3.20External closing pair is C 113-G 3016
20 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 461-C 3015
Stack -2.40External closing pair is G 462-C 3014
Stack -2.10External closing pair is A 463-T 3013
Helix -7.80 4 base pairs.
Interior loop 0.90External closing pair is G 464-C 3012
Stack -2.40External closing pair is G 468-C 3007
Stack -2.10External closing pair is A 469-T 3006
Stack -2.40External closing pair is G 470-C 3005
Helix -6.90 4 base pairs.
Interior loop 3.30External closing pair is A 471-T 3004
Stack -2.10External closing pair is C 474-G 2998
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is A 475-T 2997
Stack -2.10External closing pair is C 477-G 2995
Stack -2.10External closing pair is A 478-T 2994
Stack -3.40External closing pair is G 479-C 2993
Helix -7.60 4 base pairs.
Interior loop 4.70External closing pair is C 480-G 2992
Stack -2.10External closing pair is G 492-T 2989
Stack -2.40External closing pair is G 493-C 2988
Stack -2.20External closing pair is A 494-T 2987
Helix -6.70 4 base pairs.
Interior loop 1.30External closing pair is C 495-G 2986
Stack -3.40External closing pair is G 498-C 2984
Stack -2.10External closing pair is C 499-G 2983
Stack -1.40External closing pair is A 500-T 2982
Stack -1.00External closing pair is T 501-G 2981
Helix -7.90 5 base pairs.
Multi-loop 2.80External closing pair is A 502-T 2980
4 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 525-C 2978
Helix -3.40 2 base pairs.
Multi-loop 1.40External closing pair is C 526-G 2977
22 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 577-G 2969
Stack -1.30External closing pair is T 578-A 2968
Stack -2.10External closing pair is A 579-T 2967
Stack -3.40External closing pair is G 580-C 2966
Stack -2.10External closing pair is C 581-G 2965
Stack -1.00External closing pair is T 582-A 2964
Helix -12.00 7 base pairs.
Bulge loop 7.00External closing pair is G 583-T 2963
Stack -1.40External closing pair is G 611-T 2962
Stack -0.90External closing pair is T 612-A 2961
Stack -2.10External closing pair is T 613-A 2960
Stack -3.40External closing pair is G 614-C 2959
Stack -3.30External closing pair is C 615-G 2958
Helix -11.10 6 base pairs.
Multi-loop 2.00External closing pair is C 616-G 2957
6 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 2946-T 2955
Stack -3.40External closing pair is G 2947-C 2954
Helix -5.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 2948-G 2953
Stack -2.20External closing pair is G 618-C 2941
Stack -0.90External closing pair is T 619-A 2940
Stack -1.30External closing pair is T 620-A 2939
Stack -1.00External closing pair is T 621-G 2938
Helix -5.40 5 base pairs.
Interior loop 1.70External closing pair is A 622-T 2937
Stack -2.10External closing pair is T 624-A 2935
Helix -2.10 2 base pairs.
Interior loop 2.70External closing pair is G 625-C 2934
Stack -2.10External closing pair is T 629-A 2930
Stack -2.40External closing pair is G 630-C 2929
Stack -2.10External closing pair is A 631-T 2928
Stack -3.30External closing pair is G 632-C 2927
Stack -2.40External closing pair is G 633-C 2926
Helix -12.30 6 base pairs.
Multi-loop -0.80External closing pair is A 634-T 2925
16 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 641-C 2730
Stack -1.40External closing pair is A 642-T 2729
Stack -1.50External closing pair is T 643-G 2728
Stack -2.10External closing pair is C 644-G 2727
Stack -0.90External closing pair is A 645-T 2726
Stack -0.90External closing pair is A 646-T 2725
Helix -9.20 7 base pairs.
Multi-loop 3.30External closing pair is A 647-T 2724
8 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 680-G 2719
Stack -2.10External closing pair is T 681-A 2718
Stack -3.40External closing pair is G 682-C 2717
Helix -7.60 4 base pairs.
Interior loop 1.10External closing pair is C 683-G 2716
Stack -2.10External closing pair is T 685-A 2714
Stack -3.40External closing pair is G 686-C 2713
Stack -2.40External closing pair is C 687-G 2712
Stack -3.40External closing pair is G 688-C 2711
Helix -11.30 5 base pairs.
Multi-loop 1.70External closing pair is C 689-G 2710
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -1.30External closing pair is T 692-A 1160
Stack -1.10External closing pair is A 693-T 1159
Stack -1.30External closing pair is T 694-A 1158
Stack -1.10External closing pair is A 695-T 1157
Helix -4.80 5 base pairs.
Interior loop 2.70External closing pair is T 696-A 1156
Stack -1.30External closing pair is T 698-A 1153
Stack -1.10External closing pair is A 699-T 1152
Stack -2.40External closing pair is T 700-A 1151
Helix -4.80 4 base pairs.
Bulge loop 1.40External closing pair is C 701-G 1150
Stack -3.40External closing pair is G 702-C 1148
Stack -2.10External closing pair is C 703-G 1147
Stack -2.10External closing pair is T 704-A 1146
Stack -2.20External closing pair is G 705-C 1145
Stack -1.30External closing pair is T 706-A 1144
Helix -11.10 6 base pairs.
Interior loop 6.10External closing pair is A 707-T 1143
Stack -2.20External closing pair is A 709-T 1136
Stack -2.10External closing pair is C 710-G 1135
Stack -0.90External closing pair is A 711-T 1134
Stack -2.20External closing pair is A 712-T 1133
Stack -2.10External closing pair is C 713-G 1132
Stack -2.40External closing pair is T 714-A 1131
Helix -11.90 7 base pairs.
Interior loop 2.50External closing pair is C 715-G 1130
Stack -1.30External closing pair is T 720-A 1124
Stack -0.60External closing pair is T 721-G 1123
Helix -1.90 3 base pairs.
Interior loop 1.70External closing pair is T 722-A 1122
Interior loop -2.90External closing pair is T 724-G 1120
Stack -0.90External closing pair is A 727-T 1117
Stack -2.10External closing pair is A 728-T 1116
Helix -3.00 3 base pairs.
Multi-loop -0.60External closing pair is G 729-C 1115
32 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -3.30External closing pair is C 733-G 1075
Stack -1.40External closing pair is C 734-G 1074
Stack -2.10External closing pair is G 735-T 1073
Stack -3.40External closing pair is G 736-C 1072
Stack -2.10External closing pair is C 737-G 1071
Stack -0.90External closing pair is T 738-A 1070
Stack -2.40External closing pair is T 739-A 1069
Helix -15.60 8 base pairs.
Interior loop 1.10External closing pair is C 740-G 1068
Stack -0.90External closing pair is T 742-A 1066
Helix -0.90 2 base pairs.
Interior loop 1.70External closing pair is T 743-A 1065
Stack -1.30External closing pair is T 746-A 1062
Stack -0.90External closing pair is A 747-T 1061
Stack -0.60External closing pair is A 748-T 1060
Helix -2.80 4 base pairs.
Interior loop 2.70External closing pair is G 749-T 1059
Stack -2.10External closing pair is T 752-A 1057
Stack -3.30External closing pair is G 753-C 1056
Stack -2.50External closing pair is G 754-C 1055
Helix -7.90 4 base pairs.
Multi-loop 3.00External closing pair is T 755-G 1054
19 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 1043
Stack -1.30External closing pair is T 776-A 1042
Stack -2.10External closing pair is A 777-T 1041
Stack -2.50External closing pair is G 778-C 1040
Stack -1.00External closing pair is T 779-G 1039
Helix -9.10 6 base pairs.
Interior loop 1.50External closing pair is A 780-T 1038
Stack -1.00External closing pair is T 783-G 1035
Helix -1.00 2 base pairs.
Interior loop 0.80External closing pair is A 784-T 1034
Stack -2.10External closing pair is G 787-T 1031
Stack -3.40External closing pair is G 788-C 1030
Helix -5.50 3 base pairs.
Multi-loop 1.70External closing pair is C 789-G 1029
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -3.50 3 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -2.10External closing pair is A 794-T 1016
Stack -3.40External closing pair is G 795-C 1015
Stack -2.10External closing pair is C 796-G 1014
Stack -1.10External closing pair is A 797-T 1013
Stack -1.30External closing pair is T 798-A 1012
Stack -0.90External closing pair is A 799-T 1011
Stack -0.90External closing pair is A 800-T 1010
Helix -11.80 8 base pairs.
Interior loop 1.90External closing pair is A 801-T 1009
Stack -2.40External closing pair is G 806-C 1004
Stack -2.20External closing pair is A 807-T 1003
Helix -4.60 3 base pairs.
Multi-loop 2.60External closing pair is C 808-G 1002
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 836-T 996
Stack -2.10External closing pair is C 837-G 995
Stack -2.10External closing pair is A 838-T 994
Stack -2.40External closing pair is G 839-C 993
Stack -0.90External closing pair is A 840-T 992
Helix -9.70 6 base pairs.
Bulge loop 5.00External closing pair is A 841-T 991
Stack -1.10External closing pair is A 847-T 990
Stack -0.90External closing pair is T 848-A 989
Stack -2.10External closing pair is T 849-A 988
Stack -2.40External closing pair is G 850-C 987
Stack -2.20External closing pair is A 851-T 986
Helix -8.70 6 base pairs.
Multi-loop 3.60External closing pair is C 852-G 985
11 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 911-G 984
Stack -0.90External closing pair is A 912-T 983
Stack -1.10External closing pair is A 913-T 982
Stack -2.40External closing pair is T 914-A 981
Stack -3.30External closing pair is C 915-G 980
Stack -2.40External closing pair is C 916-G 979
Helix -11.10 7 base pairs.
Interior loop 0.50External closing pair is G 917-C 978
Stack -2.40External closing pair is G 919-C 976
Helix -2.40 2 base pairs.
Interior loop 4.70External closing pair is A 920-T 975
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -2.10External closing pair is G 864-T 910
Stack -2.20External closing pair is G 865-C 909
Stack -1.30External closing pair is T 866-A 908
Helix -5.60 4 base pairs.
Interior loop 1.10External closing pair is A 867-T 907
Stack -3.40External closing pair is G 869-C 905
Stack -2.10External closing pair is C 870-G 904
Helix -5.50 3 base pairs.
Interior loop 3.50External closing pair is A 871-T 903
Stack -0.90External closing pair is T 878-A 900
Stack -1.30External closing pair is T 879-A 899
Helix -2.20 3 base pairs.
Interior loop 1.70External closing pair is T 880-G 898
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 810-A 827
Helix -2.10 2 base pairs.
Interior loop -1.60External closing pair is G 811-C 826
Stack -3.40External closing pair is G 814-C 823
Helix -3.40 2 base pairs.
Hairpin loop 3.90Closing pair is C 815-G 822
Stack -2.10External closing pair is T 759-A 768
Stack -3.30External closing pair is G 760-C 767
Helix -5.40 3 base pairs.
Hairpin loop 4.50Closing pair is G 761-C 766
Stack -0.90External closing pair is T 650-A 677
Stack -0.90External closing pair is T 651-A 676
Stack -2.10External closing pair is T 652-A 675
Stack -1.50External closing pair is G 653-C 674
Helix -5.40 5 base pairs.
Interior loop 2.70External closing pair is G 654-T 673
Stack -2.10External closing pair is A 658-T 669
Stack -3.40External closing pair is G 659-C 668
Helix -5.50 3 base pairs.
Hairpin loop 3.40Closing pair is C 660-G 667
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -2.40External closing pair is T 127-A 453
Stack -3.30External closing pair is C 128-G 452
Stack -2.40External closing pair is C 129-G 451
Stack -2.20External closing pair is G 130-C 450
Helix -10.30 5 base pairs.
Bulge loop 4.50External closing pair is T 131-A 449
Stack -2.40External closing pair is G 132-C 443
Stack -2.20External closing pair is A 133-T 442
Stack -2.10External closing pair is C 134-G 441
Stack -2.20External closing pair is A 135-T 440
Helix -8.90 5 base pairs.
Multi-loop 0.50External closing pair is C 136-G 439
29 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 353-G 423
Stack -0.90External closing pair is T 354-A 422
Stack -0.90External closing pair is T 355-A 421
Stack -2.10External closing pair is T 356-A 420
Helix -6.00 5 base pairs.
Bulge loop 0.40External closing pair is G 357-C 419
Bulge loop 0.50External closing pair is C 358-G 417
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -1.50External closing pair is T 139-G 340
Stack -2.10External closing pair is C 140-G 339
Stack -0.90External closing pair is T 141-A 338
Stack -1.30External closing pair is T 142-A 337
Stack -2.20External closing pair is A 143-T 336
Helix -8.00 6 base pairs.
Interior loop 3.90External closing pair is C 144-G 335
Stack -0.90External closing pair is A 148-T 328
Stack -2.20External closing pair is A 149-T 327
Helix -3.10 3 base pairs.
Interior loop 1.00External closing pair is C 150-G 326
Stack -1.10External closing pair is A 153-T 323
Stack -2.10External closing pair is T 154-A 322
Stack -3.30External closing pair is G 155-C 321
Helix -6.50 4 base pairs.
Multi-loop 1.90External closing pair is G 156-C 320
17 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 286-C 317
Stack -1.40External closing pair is A 287-T 316
Stack -1.00External closing pair is T 288-G 315
Helix -4.80 4 base pairs.
Interior loop 0.60External closing pair is A 289-T 314
Stack -1.30External closing pair is T 292-A 311
Helix -1.30 2 base pairs.
Hairpin loop 5.90Closing pair is A 293-T 310
Stack -2.10External closing pair is A 158-T 271
Stack -3.40External closing pair is G 159-C 270
Stack -2.10External closing pair is C 160-G 269
Stack -2.10External closing pair is T 161-A 268
Helix -9.70 5 base pairs.
Bulge loop 3.70External closing pair is G 162-C 267
Stack -1.30External closing pair is G 163-T 263
Stack -2.20External closing pair is A 164-T 262
Stack -2.10External closing pair is C 165-G 261
Helix -5.60 4 base pairs.
Bulge loop 1.40External closing pair is T 166-A 260
Stack -2.10External closing pair is C 167-G 258
Stack -1.00External closing pair is T 168-G 257
Helix -3.10 3 base pairs.
Bulge loop 4.20External closing pair is A 169-T 256
Stack -1.10External closing pair is A 170-T 252
Stack -2.40External closing pair is T 171-A 251
Stack -2.10External closing pair is C 172-G 250
Stack -2.10External closing pair is A 173-T 249
Helix -7.70 5 base pairs.
Multi-loop 3.20External closing pair is G 174-C 248
18 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 232-G 246
Stack -1.40External closing pair is A 233-T 245
Stack -1.00External closing pair is T 234-G 244
Stack -2.10External closing pair is A 235-T 243
Stack -3.30External closing pair is G 236-C 242
Helix -8.80 6 base pairs.
Hairpin loop 5.70Closing pair is G 237-C 241
Stack -0.90External closing pair is T 177-A 216
Stack -2.40External closing pair is T 178-A 215
Helix -3.30 3 base pairs.
Interior loop 2.00External closing pair is C 179-G 214
Stack -2.20External closing pair is A 181-T 211
Stack -2.10External closing pair is C 182-G 210
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is A 183-T 209
Stack -2.20External closing pair is A 185-T 208
Stack -2.10External closing pair is C 186-G 207
Stack -1.30External closing pair is T 187-A 206
Stack -1.00External closing pair is T 188-G 205
Helix -6.60 5 base pairs.
Interior loop 4.00External closing pair is A 189-T 204
Stack -3.40External closing pair is G 191-C 199
Helix -3.40 2 base pairs.
Hairpin loop 4.10Closing pair is C 192-G 198
Stack -2.10External closing pair is C 47-G 71
Stack -1.30External closing pair is T 48-A 70
Stack -1.40External closing pair is T 49-G 69
Stack -3.40External closing pair is G 50-C 68
Stack -2.10External closing pair is C 51-G 67
Stack -2.20External closing pair is A 52-T 66
Stack -2.10External closing pair is C 53-G 65
Stack -1.00External closing pair is T 54-A 64
Helix -15.60 9 base pairs.
Hairpin loop 5.70Closing pair is G 55-T 63

Structure 42
seq.txt
ΔG = -803.60

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 1.50External closing pair is T 211-A 1912
61 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1844-G 1894
Stack -1.00External closing pair is T 1845-A 1893
Stack -1.30External closing pair is G 1846-T 1892
Stack -2.10External closing pair is A 1847-T 1891
Stack -3.30External closing pair is G 1848-C 1890
Helix -9.80 6 base pairs.
Multi-loop 1.20External closing pair is G 1849-C 1889
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is C 1853-G 1864
Stack -2.40External closing pair is G 1854-C 1863
Helix -4.80 3 base pairs.
Hairpin loop 5.10Closing pair is A 1855-T 1862
Stack -2.10External closing pair is C 228-G 1815
Helix -2.10 2 base pairs.
Bulge loop 1.40External closing pair is T 229-A 1814
Stack -2.10External closing pair is C 231-G 1813
Stack -1.00External closing pair is T 232-G 1812
Stack -1.10External closing pair is A 233-T 1811
Stack -1.30External closing pair is T 234-A 1810
Stack -0.60External closing pair is A 235-T 1809
Stack -2.10External closing pair is G 236-T 1808
Stack -2.20External closing pair is G 237-C 1807
Helix -10.40 8 base pairs.
Bulge loop 2.90External closing pair is T 238-A 1806
Stack -2.40External closing pair is T 240-A 1805
Stack -3.30External closing pair is C 241-G 1804
Helix -5.70 3 base pairs.
Multi-loop 2.70External closing pair is C 242-G 1803
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1116-A 1796
Stack -1.30External closing pair is T 1117-A 1795
Stack -1.40External closing pair is T 1118-G 1794
Stack -1.50External closing pair is G 1119-C 1793
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is G 1120-T 1792
Stack -0.60External closing pair is A 1122-T 1790
Stack -1.30External closing pair is G 1123-T 1789
Stack -2.10External closing pair is A 1124-T 1788
Stack -3.30External closing pair is G 1125-C 1787
Stack -2.40External closing pair is G 1126-C 1786
Stack -2.20External closing pair is A 1127-T 1785
Stack -2.40External closing pair is C 1128-G 1784
Stack -3.30External closing pair is G 1129-C 1783
Stack -2.40External closing pair is G 1130-C 1782
Helix -20.00 10 base pairs.
Multi-loop 1.90External closing pair is A 1131-T 1781
4 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1206-C 1778
Stack -3.40External closing pair is G 1207-C 1777
Stack -2.10External closing pair is C 1208-G 1776
Helix -8.80 4 base pairs.
Interior loop 3.30External closing pair is T 1209-A 1775
Stack -1.30External closing pair is T 1214-A 1772
Stack -1.50External closing pair is T 1215-G 1771
Stack -2.10External closing pair is C 1216-G 1770
Stack -2.10External closing pair is T 1217-A 1769
Stack -3.30External closing pair is G 1218-C 1768
Stack -3.30External closing pair is G 1219-C 1767
Stack -2.40External closing pair is G 1220-C 1766
Stack -0.90External closing pair is A 1221-T 1765
Helix -16.90 9 base pairs.
Multi-loop 2.10External closing pair is A 1222-T 1764
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1762
Helix -2.40 2 base pairs.
Hairpin loop 3.60Closing pair is C 1752-G 1761
Stack -3.40External closing pair is G 1225-C 1749
Stack -2.10External closing pair is C 1226-G 1748
Stack -1.10External closing pair is A 1227-T 1747
Helix -6.60 4 base pairs.
Interior loop 0.60External closing pair is T 1228-A 1746
Stack -2.20External closing pair is G 1231-C 1743
Stack -0.90External closing pair is T 1232-A 1742
Stack -1.30External closing pair is T 1233-A 1741
Helix -4.40 4 base pairs.
Multi-loop 3.50External closing pair is A 1234-T 1740
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1723-A 1738
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -6.60 4 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -1.40External closing pair is G 1238-T 1713
Stack -2.40External closing pair is T 1239-A 1712
Stack -2.10External closing pair is C 1240-G 1711
Stack -0.90External closing pair is T 1241-A 1710
Stack -0.90External closing pair is T 1242-A 1709
Stack -1.30External closing pair is T 1243-A 1708
Stack -1.40External closing pair is T 1244-G 1707
Stack -3.40External closing pair is G 1245-C 1706
Helix -13.80 9 base pairs.
Multi-loop 2.40External closing pair is C 1246-G 1705
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1292-G 1701
Stack -2.20External closing pair is A 1293-T 1700
Stack -2.10External closing pair is C 1294-G 1699
Helix -5.30 4 base pairs.
Multi-loop 1.80External closing pair is T 1295-A 1698
18 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.40External closing pair is T 1248-A 1274
Stack -2.10External closing pair is C 1249-G 1273
Stack -2.10External closing pair is T 1250-A 1272
Helix -6.60 4 base pairs.
Interior loop 3.40External closing pair is G 1251-C 1271
Stack -0.90External closing pair is A 1255-T 1266
Stack -2.20External closing pair is A 1256-T 1265
Helix -3.10 3 base pairs.
Hairpin loop 4.60Closing pair is C 1257-G 1264
Stack -2.20External closing pair is G 1132-C 1203
Stack -0.90External closing pair is T 1133-A 1202
Stack -1.00External closing pair is T 1134-A 1201
Helix -4.10 4 base pairs.
Multi-loop 3.10External closing pair is G 1135-T 1200
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -3.40External closing pair is G 1147-C 1175
Stack -2.10External closing pair is C 1148-G 1174
Stack -2.10External closing pair is A 1149-T 1173
Helix -7.60 4 base pairs.
Interior loop 3.00External closing pair is G 1150-C 1172
Stack -1.30External closing pair is T 1154-A 1169
Stack -1.00External closing pair is T 1155-G 1168
Stack -1.10External closing pair is A 1156-T 1167
Helix -3.40 4 base pairs.
Hairpin loop 5.00Closing pair is T 1157-A 1166
Stack -2.10External closing pair is T 245-A 1112
Stack -2.20External closing pair is G 246-C 1111
Stack -2.40External closing pair is T 247-A 1110
Stack -2.10External closing pair is C 248-G 1109
Stack -2.10External closing pair is T 249-A 1108
Stack -2.40External closing pair is G 250-C 1107
Stack -1.10External closing pair is A 251-T 1106
Helix -14.40 8 base pairs.
Multi-loop 3.50External closing pair is T 252-A 1105
6 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 978-G 1102
Stack -3.30External closing pair is G 979-C 1101
Helix -5.70 3 base pairs.
Bulge loop 1.60External closing pair is G 980-C 1100
Stack -0.90External closing pair is T 982-A 1099
Stack -2.10External closing pair is T 983-A 1098
Stack -1.50External closing pair is G 984-C 1097
Stack -1.40External closing pair is G 985-T 1096
Stack -2.40External closing pair is T 986-A 1095
Helix -8.30 6 base pairs.
Multi-loop 1.20External closing pair is C 987-G 1094
30 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1015-G 1075
Stack -1.00External closing pair is T 1016-G 1074
Stack -2.10External closing pair is A 1017-T 1073
Stack -2.50External closing pair is G 1018-C 1072
Stack -0.60External closing pair is T 1019-G 1071
Stack -0.90External closing pair is T 1020-A 1070
Stack -1.30External closing pair is T 1021-A 1069
Helix -10.50 8 base pairs.
Multi-loop 2.60External closing pair is T 1022-G 1068
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1039-C 1055
Helix -3.40 2 base pairs.
Hairpin loop 4.80Closing pair is C 1040-G 1054
Stack -2.40External closing pair is G 1024-C 1037
Stack -2.20External closing pair is A 1025-T 1036
Helix -4.60 3 base pairs.
Hairpin loop 3.60Closing pair is C 1026-G 1035
Stack -2.10External closing pair is T 994-A 1008
Stack -2.20External closing pair is G 995-C 1007
Stack -1.30External closing pair is T 996-A 1006
Helix -5.60 4 base pairs.
Hairpin loop 5.60Closing pair is A 997-T 1005
Stack -3.30External closing pair is G 257-C 977
Stack -2.40External closing pair is G 258-C 976
Stack -0.90External closing pair is A 259-T 975
Stack -2.10External closing pair is A 260-T 974
Helix -8.70 5 base pairs.
Interior loop 2.70External closing pair is G 261-C 973
Stack -2.40External closing pair is T 266-A 969
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 267-G 968
Stack -2.10External closing pair is A 268-T 966
Stack -3.40External closing pair is G 269-C 965
Helix -5.50 3 base pairs.
Multi-loop 2.60External closing pair is C 270-G 964
18 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Stack -0.90External closing pair is A 275-T 926
Stack -2.10External closing pair is A 276-T 925
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is G 277-C 924
Stack -2.10External closing pair is A 279-T 922
Helix -2.10 2 base pairs.
Interior loop 0.40External closing pair is G 280-C 921
Stack -2.40External closing pair is C 282-G 919
Stack -3.40External closing pair is G 283-C 918
Helix -5.80 3 base pairs.
Interior loop 0.40External closing pair is C 284-G 917
Stack -2.40External closing pair is G 286-C 915
Stack -1.10External closing pair is A 287-T 914
Helix -3.50 3 base pairs.
Multi-loop 4.10External closing pair is T 288-A 913
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 333-T 911
Stack -2.10External closing pair is A 334-T 910
Stack -2.20External closing pair is G 335-C 909
Stack -1.30External closing pair is T 336-A 908
Helix -6.50 5 base pairs.
Bulge loop 1.70External closing pair is A 337-T 907
Stack -3.30External closing pair is G 339-C 906
Helix -3.30 2 base pairs.
Bulge loop 0.40External closing pair is G 340-C 905
Stack -2.10External closing pair is C 342-G 904
Helix -2.10 2 base pairs.
Interior loop 1.90External closing pair is A 343-T 903
Stack -0.90External closing pair is T 345-A 900
Stack -2.40External closing pair is T 346-A 899
Helix -3.30 3 base pairs.
Interior loop 3.40External closing pair is C 347-G 898
Stack -1.30External closing pair is G 351-T 893
Stack -2.20External closing pair is A 352-T 892
Helix -3.50 3 base pairs.
Interior loop 0.60External closing pair is C 353-G 891
Stack -3.40External closing pair is G 357-C 887
Stack -3.30External closing pair is C 358-G 886
Stack -2.10External closing pair is C 359-G 885
Stack -1.30External closing pair is T 360-A 884
Helix -10.10 5 base pairs.
Multi-loop 3.60External closing pair is T 361-G 883
21 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 582-A 871
Stack -3.40External closing pair is G 583-C 870
Stack -2.10External closing pair is C 584-G 869
Stack -0.90External closing pair is T 585-A 868
Stack -1.30External closing pair is T 586-A 867
Stack -2.20External closing pair is A 587-T 866
Stack -3.30External closing pair is C 588-G 865
Helix -15.30 8 base pairs.
Bulge loop 1.70External closing pair is C 589-G 864
Stack -0.90External closing pair is T 590-A 862
Stack -1.30External closing pair is T 591-A 861
Helix -2.20 3 base pairs.
Interior loop 4.10External closing pair is A 592-T 860
Stack -2.40External closing pair is T 594-A 856
Stack -2.10External closing pair is C 595-G 855
Stack -0.90External closing pair is T 596-A 854
Helix -5.40 4 base pairs.
Interior loop 1.70External closing pair is T 597-A 853
Stack -1.30External closing pair is T 599-A 851
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is T 600-G 850
Stack -1.10External closing pair is A 602-T 848
Stack -1.30External closing pair is T 603-A 847
Stack -2.20External closing pair is A 604-T 846
Stack -2.10External closing pair is C 605-G 845
Helix -6.70 5 base pairs.
Interior loop 4.10External closing pair is T 606-A 844
Stack -2.40External closing pair is T 608-A 840
Stack -2.10External closing pair is C 609-G 839
Stack -2.10External closing pair is T 610-A 838
Stack -2.20External closing pair is G 611-C 837
Helix -8.80 5 base pairs.
Multi-loop 1.50External closing pair is T 612-A 836
25 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 775-C 826
Stack -1.30External closing pair is T 776-A 825
Stack -2.10External closing pair is A 777-T 824
Stack -2.50External closing pair is G 778-C 823
Helix -8.10 5 base pairs.
Interior loop 3.50External closing pair is T 779-G 822
Stack -3.40External closing pair is G 788-C 815
Stack -2.10External closing pair is C 789-G 814
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is T 790-G 813
Stack -1.00External closing pair is T 792-G 811
Stack -0.90External closing pair is A 793-T 810
Stack -2.10External closing pair is A 794-T 809
Helix -4.00 4 base pairs.
Hairpin loop 5.60Closing pair is G 795-C 808
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.40External closing pair is G 367-C 576
Stack -1.10External closing pair is A 368-T 575
Stack -2.10External closing pair is T 369-A 574
Stack -2.40External closing pair is G 370-C 573
Helix -8.00 5 base pairs.
Multi-loop 2.70External closing pair is A 371-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.20External closing pair is G 373-C 537
Stack -0.90External closing pair is T 374-A 536
Stack -1.30External closing pair is T 375-A 535
Helix -4.40 4 base pairs.
Interior loop 3.60External closing pair is A 376-T 534
Stack -2.10External closing pair is T 384-A 527
Stack -2.50External closing pair is G 385-C 526
Stack -0.60External closing pair is T 386-G 525
Helix -5.20 4 base pairs.
Interior loop 2.30External closing pair is T 387-A 524
Stack -2.20External closing pair is A 389-T 521
Stack -3.30External closing pair is C 390-G 520
Stack -2.10External closing pair is C 391-G 519
Stack -1.10External closing pair is A 392-T 518
Stack -1.30External closing pair is T 393-A 517
Helix -10.00 6 base pairs.
Interior loop 2.30External closing pair is A 394-T 516
Stack -3.30External closing pair is G 398-C 511
Stack -2.20External closing pair is G 399-C 510
Stack -1.30External closing pair is T 400-A 509
Helix -6.80 4 base pairs.
Interior loop 1.40External closing pair is A 401-T 508
Stack -1.30External closing pair is T 404-A 505
Stack -1.10External closing pair is A 405-T 504
Stack -0.90External closing pair is T 406-A 503
Stack -1.30External closing pair is T 407-A 502
Helix -4.60 5 base pairs.
Interior loop 1.10External closing pair is A 408-T 501
Stack -2.50External closing pair is G 410-C 499
Helix -2.50 2 base pairs.
Multi-loop 2.40External closing pair is T 411-G 498
17 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 451-C 496
Helix -3.30 2 base pairs.
Interior loop -0.50External closing pair is G 452-C 495
Stack -1.40External closing pair is C 455-G 492
Stack -1.30External closing pair is G 456-T 491
Stack -0.90External closing pair is A 457-T 490
Stack -0.90External closing pair is A 458-T 489
Stack -1.10External closing pair is A 459-T 488
Stack -1.00External closing pair is T 460-A 487
Helix -6.60 7 base pairs.
Bulge loop 2.50External closing pair is G 461-T 486
Stack -0.60External closing pair is A 463-T 485
Stack -1.30External closing pair is G 464-T 484
Stack -1.10External closing pair is A 465-T 483
Stack -0.90External closing pair is T 466-A 482
Stack -2.10External closing pair is T 467-A 481
Helix -6.00 6 base pairs.
Hairpin loop 5.30Closing pair is G 468-C 480
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 43
seq.txt
ΔG = -802.70

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Multi-loop 2.20External closing pair is G 46-C 3102
29 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 2666-T 3099
Stack -2.10External closing pair is C 2667-G 3098
Stack -0.90External closing pair is T 2668-A 3097
Stack -2.10External closing pair is T 2669-A 3096
Stack -3.30External closing pair is G 2670-C 3095
Stack -2.20External closing pair is G 2671-C 3094
Stack -0.90External closing pair is T 2672-A 3093
Stack -2.10External closing pair is T 2673-A 3092
Helix -15.80 9 base pairs.
Multi-loop 3.70External closing pair is G 2674-C 3091
3 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2697-A 3090
Stack -3.30External closing pair is G 2698-C 3089
Helix -5.40 3 base pairs.
Interior loop -4.40External closing pair is G 2699-C 3088
Stack -2.20External closing pair is G 2702-C 3085
Stack -0.90External closing pair is T 2703-A 3084
Stack -1.30External closing pair is T 2704-A 3083
Helix -4.40 4 base pairs.
Multi-loop 3.30External closing pair is T 2705-G 3082
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.40External closing pair is G 2675-C 2693
Stack -1.10External closing pair is A 2676-T 2692
Stack -2.40External closing pair is T 2677-A 2691
Stack -3.30External closing pair is C 2678-G 2690
Helix -9.20 5 base pairs.
Bulge loop 1.40External closing pair is C 2679-G 2689
Stack -3.40External closing pair is G 2680-C 2687
Helix -3.40 2 base pairs.
Hairpin loop 4.20Closing pair is C 2681-G 2686
Stack -2.40External closing pair is T 1063-A 2648
Stack -2.10External closing pair is C 1064-G 2647
Stack -0.90External closing pair is A 1065-T 2646
Helix -5.40 4 base pairs.
Bulge loop 2.70External closing pair is A 1066-T 2645
Stack -1.00External closing pair is T 1067-A 2643
Stack -1.30External closing pair is G 1068-T 2642
Stack -0.90External closing pair is A 1069-T 2641
Stack -2.10External closing pair is A 1070-T 2640
Stack -3.40External closing pair is G 1071-C 2639
Helix -8.70 6 base pairs.
Bulge loop 1.40External closing pair is C 1072-G 2638
Stack -3.30External closing pair is G 1074-C 2637
Stack -2.40External closing pair is G 1075-C 2636
Stack -0.90External closing pair is A 1076-T 2635
Helix -6.60 4 base pairs.
Bulge loop 4.60External closing pair is A 1077-T 2634
Stack -2.20External closing pair is A 1082-T 2633
Stack -2.10External closing pair is C 1083-G 2632
Stack -1.10External closing pair is A 1084-T 2631
Stack -2.40External closing pair is T 1085-A 2630
Helix -7.80 5 base pairs.
Interior loop 1.10External closing pair is C 1086-G 2629
Stack -0.60External closing pair is T 1088-G 2627
Stack -2.40External closing pair is T 1089-A 2626
Helix -3.00 3 base pairs.
Multi-loop 1.10External closing pair is C 1090-G 2625
18 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 2094-A 2622
Stack -0.50External closing pair is G 2095-T 2621
Stack -1.30External closing pair is G 2096-T 2620
Stack -0.90External closing pair is A 2097-T 2619
Stack -2.20External closing pair is A 2098-T 2618
Stack -2.10External closing pair is C 2099-G 2617
Stack -1.40External closing pair is A 2100-T 2616
Helix -9.40 8 base pairs.
Interior loop 4.10External closing pair is T 2101-G 2615
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.40External closing pair is G 1094-C 2080
Stack -1.40External closing pair is A 1095-T 2079
Stack -1.50External closing pair is T 1096-G 2078
Stack -2.10External closing pair is C 1097-G 2077
Helix -7.40 5 base pairs.
Multi-loop 3.70External closing pair is A 1098-T 2076
2 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1132-T 2075
Stack -0.90External closing pair is T 1133-A 2074
Stack -1.00External closing pair is T 1134-A 2073
Helix -3.30 4 base pairs.
Interior loop -0.50External closing pair is G 1135-T 2072
Stack -3.30External closing pair is C 1138-G 2069
Stack -2.10External closing pair is C 1139-G 2068
Stack -0.90External closing pair is A 1140-T 2067
Stack -2.20External closing pair is A 1141-T 2066
Stack -2.10External closing pair is C 1142-G 2065
Helix -10.60 6 base pairs.
Multi-loop 0.20External closing pair is T 1143-A 2064
15 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.40External closing pair is G 1150-C 2043
Stack -1.40External closing pair is A 1151-T 2042
Stack -1.00External closing pair is T 1152-G 2041
Stack -1.10External closing pair is A 1153-T 2040
Stack -0.90External closing pair is T 1154-A 2039
Helix -6.80 6 base pairs.
Multi-loop 3.40External closing pair is T 1155-A 2038
12 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1865-A 2036
Stack -2.10External closing pair is C 1866-G 2035
Helix -4.50 3 base pairs.
Bulge loop 1.60External closing pair is A 1867-T 2034
Stack -1.40External closing pair is C 1869-G 2033
Stack -2.10External closing pair is G 1870-T 2032
Stack -2.50External closing pair is G 1871-C 2031
Stack -1.00External closing pair is T 1872-G 2030
Stack -0.90External closing pair is A 1873-T 2029
Helix -7.90 6 base pairs.
Interior loop 1.10External closing pair is A 1874-T 2028
Stack -2.10External closing pair is C 1876-G 2026
Helix -2.10 2 base pairs.
Bulge loop 1.40External closing pair is T 1877-A 2025
Stack -3.30External closing pair is C 1879-G 2024
Stack -2.10External closing pair is C 1880-G 2023
Helix -5.40 3 base pairs.
Multi-loop 2.40External closing pair is A 1881-T 2022
21 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1921-C 2016
Stack -2.40External closing pair is C 1922-G 2015
Stack -1.50External closing pair is G 1923-C 2014
Stack -1.40External closing pair is G 1924-T 2013
Stack -1.30External closing pair is T 1925-A 2012
Helix -10.00 6 base pairs.
Interior loop 1.70External closing pair is T 1926-G 2011
Stack -1.30External closing pair is T 1928-A 2009
Stack -0.60External closing pair is A 1929-T 2008
Stack -1.40External closing pair is G 1930-T 2007
Stack -1.30External closing pair is T 1931-A 2006
Stack -1.00External closing pair is T 1932-G 2005
Helix -5.60 6 base pairs.
Interior loop 4.70External closing pair is A 1933-T 2004
Stack -2.40External closing pair is G 1937-C 1995
Stack -0.90External closing pair is A 1938-T 1994
Helix -3.30 3 base pairs.
Interior loop 1.10External closing pair is A 1939-T 1993
Stack -3.30External closing pair is G 1941-C 1991
Stack -3.40External closing pair is G 1942-C 1990
Stack -2.10External closing pair is C 1943-G 1989
Helix -8.80 4 base pairs.
Interior loop 4.10External closing pair is A 1944-T 1988
Stack -0.90External closing pair is T 1946-A 1984
Stack -0.90External closing pair is T 1947-A 1983
Stack -2.40External closing pair is T 1948-A 1982
Helix -4.20 4 base pairs.
Bulge loop 3.70External closing pair is C 1949-G 1981
Stack -0.90External closing pair is A 1950-T 1977
Stack -2.20External closing pair is A 1951-T 1976
Stack -2.10External closing pair is C 1952-G 1975
Helix -5.20 4 base pairs.
Bulge loop 4.60External closing pair is T 1953-A 1974
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -0.60External closing pair is A 1163-T 1860
Stack -2.10External closing pair is G 1164-T 1859
Stack -2.40External closing pair is G 1165-C 1858
Stack -1.10External closing pair is A 1166-T 1857
Helix -6.20 5 base pairs.
Interior loop 2.70External closing pair is T 1167-A 1856
Stack -2.50External closing pair is G 1174-T 1850
Stack -3.30External closing pair is C 1175-G 1849
Stack -2.10External closing pair is C 1176-G 1848
Stack -2.40External closing pair is T 1177-A 1847
Stack -2.10External closing pair is C 1178-G 1846
Stack -2.10External closing pair is A 1179-T 1845
Helix -14.50 7 base pairs.
Multi-loop 0.50External closing pair is G 1180-C 1844
23 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1442-T 1839
Stack -0.90External closing pair is T 1443-A 1838
Stack -2.40External closing pair is T 1444-A 1837
Helix -4.40 4 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1836
Stack -2.10External closing pair is T 1446-A 1834
Stack -2.20External closing pair is G 1447-C 1833
Stack -0.90External closing pair is T 1448-A 1832
Stack -2.40External closing pair is T 1449-A 1831
Stack -2.10External closing pair is C 1450-G 1830
Helix -9.70 6 base pairs.
Multi-loop 0.80External closing pair is T 1451-A 1829
26 ss bases & 4 closing helices.
Stack -2.20External closing pair is G 1525-C 1822
Stack -0.90External closing pair is T 1526-A 1821
Helix -3.10 3 base pairs.
Interior loop 3.00External closing pair is T 1527-A 1820
Stack -1.30External closing pair is T 1532-A 1816
Stack -0.60External closing pair is T 1533-G 1815
Stack -2.40External closing pair is T 1534-A 1814
Stack -3.30External closing pair is C 1535-G 1813
Stack -2.10External closing pair is C 1536-G 1812
Stack -1.10External closing pair is A 1537-T 1811
Helix -10.80 7 base pairs.
Interior loop 3.20External closing pair is T 1538-A 1810
Stack -2.40External closing pair is T 1544-A 1805
Stack -2.10External closing pair is C 1545-G 1804
Stack -1.00External closing pair is T 1546-G 1803
Stack -2.20External closing pair is A 1547-T 1802
Stack -2.10External closing pair is C 1548-G 1801
Helix -9.80 6 base pairs.
Multi-loop 4.10External closing pair is T 1549-A 1800
17 ss bases & 4 closing helices.
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -0.90External closing pair is A 1659-T 1765
Stack -2.20External closing pair is A 1660-T 1764
Stack -2.10External closing pair is C 1661-G 1763
Stack -2.40External closing pair is T 1662-A 1762
Stack -1.40External closing pair is C 1663-G 1761
Stack -1.30External closing pair is G 1664-T 1760
Stack -0.90External closing pair is A 1665-T 1759
Stack -2.10External closing pair is A 1666-T 1758
Stack -2.50External closing pair is G 1667-C 1757
Stack -1.00External closing pair is T 1668-G 1756
Stack -1.10External closing pair is A 1669-T 1755
Stack -1.00External closing pair is T 1670-A 1754
Helix -18.90 13 base pairs.
Interior loop 2.20External closing pair is G 1671-T 1753
Stack -1.40External closing pair is T 1674-G 1750
Stack -3.40External closing pair is G 1675-C 1749
Helix -4.80 3 base pairs.
Bulge loop 1.70External closing pair is C 1676-G 1748
Stack -0.90External closing pair is T 1677-A 1746
Stack -2.40External closing pair is T 1678-A 1745
Helix -3.30 3 base pairs.
Bulge loop 4.10External closing pair is C 1679-G 1744
Stack -0.90External closing pair is T 1680-A 1739
Stack -2.40External closing pair is T 1681-A 1738
Stack -2.10External closing pair is C 1682-G 1737
Stack -2.10External closing pair is T 1683-A 1736
Stack -3.30External closing pair is G 1684-C 1735
Helix -10.80 6 base pairs.
Multi-loop 2.30External closing pair is G 1685-C 1734
26 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.50External closing pair is G 1699-C 1706
Helix -2.50 2 base pairs.
Hairpin loop 4.40Closing pair is T 1700-G 1705
Stack -2.10External closing pair is C 1552-G 1657
Stack -2.10External closing pair is T 1553-A 1656
Stack -2.40External closing pair is G 1554-C 1655
Stack -0.90External closing pair is A 1555-T 1654
Helix -7.50 5 base pairs.
Multi-loop 4.10External closing pair is A 1556-T 1653
7 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.40External closing pair is G 1196-C 1437
Stack -1.10External closing pair is A 1197-T 1436
Stack -2.40External closing pair is T 1198-A 1435
Stack -2.10External closing pair is C 1199-G 1434
Helix -8.00 5 base pairs.
Multi-loop 0.10External closing pair is T 1200-A 1433
18 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1302-C 1429
Stack -2.20External closing pair is G 1303-C 1428
Stack -1.30External closing pair is T 1304-A 1427
Stack -1.10External closing pair is A 1305-T 1426
Helix -7.90 5 base pairs.
Multi-loop 3.90External closing pair is T 1306-A 1425
27 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -1.40External closing pair is G 1329-T 1365
Stack -0.90External closing pair is T 1330-A 1364
Helix -2.30 3 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1363
Stack -3.30External closing pair is C 1333-G 1361
Stack -2.10External closing pair is C 1334-G 1360
Stack -0.90External closing pair is A 1335-T 1359
Helix -6.30 4 base pairs.
Bulge loop 4.60External closing pair is A 1336-T 1358
Stack -1.30External closing pair is T 1341-A 1357
Stack -1.10External closing pair is A 1342-T 1356
Stack -2.40External closing pair is T 1343-A 1355
Helix -4.80 4 base pairs.
Hairpin loop 4.90Closing pair is C 1344-G 1354
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -3.30External closing pair is C 1100-G 1130
Stack -2.40External closing pair is C 1101-G 1129
Stack -2.20External closing pair is G 1102-C 1128
Stack -2.40External closing pair is T 1103-A 1127
Helix -10.30 5 base pairs.
Interior loop 1.10External closing pair is C 1104-G 1126
Stack -2.40External closing pair is T 1106-A 1124
Helix -2.40 2 base pairs.
Interior loop 0.90External closing pair is C 1107-G 1123
Stack -2.10External closing pair is C 1111-G 1119
Stack -0.60External closing pair is A 1112-T 1118
Helix -2.70 3 base pairs.
Hairpin loop 6.20Closing pair is G 1113-T 1117
Stack -3.40External closing pair is G 50-C 1055
Stack -2.10External closing pair is C 51-G 1054
Helix -5.50 3 base pairs.
Multi-loop 3.70External closing pair is A 52-T 1053
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 1017-T 1044
Stack -2.20External closing pair is G 1018-C 1043
Helix -4.30 3 base pairs.
Interior loop 2.30External closing pair is T 1019-A 1042
Stack -2.40External closing pair is G 1024-C 1037
Stack -2.20External closing pair is A 1025-T 1036
Helix -4.60 3 base pairs.
Hairpin loop 3.60Closing pair is C 1026-G 1035
Stack -3.40External closing pair is G 55-C 1015
Helix -3.40 2 base pairs.
Bulge loop 1.70External closing pair is C 56-G 1014
Stack -1.30External closing pair is T 57-A 1012
Stack -0.60External closing pair is A 58-T 1011
Stack -0.50External closing pair is G 59-T 1010
Stack -1.40External closing pair is G 60-T 1009
Helix -3.80 5 base pairs.
Interior loop 1.70External closing pair is T 61-A 1008
Stack -1.30External closing pair is T 63-A 1006
Stack -2.10External closing pair is A 64-T 1005
Helix -3.40 3 base pairs.
Bulge loop 2.30External closing pair is G 65-C 1004
Stack -2.50External closing pair is G 67-T 1003
Stack -1.40External closing pair is C 68-G 1002
Stack -1.30External closing pair is G 69-T 1001
Stack -0.60External closing pair is A 70-T 1000
Stack -1.30External closing pair is G 71-T 999
Stack -1.10External closing pair is A 72-T 998
Stack -1.30External closing pair is T 73-A 997
Stack -2.20External closing pair is A 74-T 996
Helix -11.70 9 base pairs.
Bulge loop 4.80External closing pair is C 75-G 995
Stack -3.30External closing pair is C 76-G 985
Stack -2.10External closing pair is C 77-G 984
Stack -0.90External closing pair is A 78-T 983
Stack -1.10External closing pair is A 79-T 982
Stack -2.40External closing pair is T 80-A 981
Stack -3.30External closing pair is C 81-G 980
Helix -13.10 7 base pairs.
Multi-loop 1.00External closing pair is C 82-G 979
22 ss bases & 5 closing helices.
Stack -2.10External closing pair is G 949-T 974
Stack -2.40External closing pair is G 950-C 973
Stack -1.10External closing pair is A 951-T 972
Stack -2.10External closing pair is T 952-A 971
Stack -2.20External closing pair is G 953-C 970
Helix -9.90 6 base pairs.
Bulge loop 1.40External closing pair is T 954-A 969
Stack -2.10External closing pair is C 956-G 968
Stack -1.30External closing pair is T 957-A 967
Helix -3.40 3 base pairs.
Hairpin loop 5.60Closing pair is A 958-T 966
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 90-A 874
Stack -2.20External closing pair is G 91-C 873
Stack -0.90External closing pair is T 92-A 872
Stack -2.10External closing pair is T 93-A 871
Stack -2.50External closing pair is G 94-C 870
Stack -0.60External closing pair is T 95-G 869
Helix -10.40 7 base pairs.
Bulge loop 2.80External closing pair is T 96-A 868
Stack -2.50External closing pair is G 97-T 866
Stack -2.10External closing pair is C 98-G 865
Stack -1.40External closing pair is T 99-G 864
Stack -2.20External closing pair is G 100-C 863
Stack -0.90External closing pair is T 101-A 862
Helix -9.10 6 base pairs.
Multi-loop 4.80External closing pair is T 102-A 861
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 1.90External closing pair is C 116-G 811
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -3.40External closing pair is G 118-C 796
Stack -2.10External closing pair is C 119-G 795
Stack -0.90External closing pair is T 120-A 794
Stack -1.30External closing pair is T 121-A 793
Helix -7.70 5 base pairs.
Multi-loop 3.90External closing pair is A 122-T 792
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -5.60 4 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -2.40External closing pair is T 127-A 762
Stack -3.30External closing pair is C 128-G 761
Stack -1.40External closing pair is C 129-G 760
Helix -7.10 4 base pairs.
Bulge loop 2.40External closing pair is G 130-T 759
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -6.70 4 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253

Structure 44
seq.txt
ΔG = -800.80

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 5.30External closing pair is T 92-G 2680
26 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -2.40External closing pair is T 1948-A 2648
Stack -2.10External closing pair is C 1949-G 2647
Stack -0.90External closing pair is A 1950-T 2646
Stack -2.20External closing pair is A 1951-T 2645
Stack -2.10External closing pair is C 1952-G 2644
Helix -9.70 6 base pairs.
Interior loop 1.10External closing pair is T 1953-A 2643
Stack -2.10External closing pair is G 1956-T 2640
Stack -3.40External closing pair is G 1957-C 2639
Helix -5.50 3 base pairs.
Interior loop 0.40External closing pair is C 1958-G 2638
Stack -2.40External closing pair is G 1960-C 2636
Stack -0.90External closing pair is A 1961-T 2635
Helix -3.30 3 base pairs.
Multi-loop 3.20External closing pair is A 1962-T 2634
10 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2012-T 2631
Stack -2.40External closing pair is T 2013-A 2630
Stack -2.40External closing pair is C 2014-G 2629
Stack -3.40External closing pair is G 2015-C 2628
Helix -9.30 5 base pairs.
Bulge loop 1.70External closing pair is C 2016-G 2627
Stack -1.30External closing pair is T 2018-A 2626
Stack -0.60External closing pair is T 2019-G 2625
Stack -0.90External closing pair is T 2020-A 2624
Stack -0.90External closing pair is T 2021-A 2623
Stack -1.00External closing pair is T 2022-A 2622
Stack -0.50External closing pair is G 2023-T 2621
Stack -1.30External closing pair is G 2024-T 2620
Stack -0.60External closing pair is A 2025-T 2619
Stack -2.50External closing pair is G 2026-T 2618
Helix -9.60 10 base pairs.
Multi-loop 1.70External closing pair is C 2027-G 2617
13 ss bases & 5 closing helices.
Stack -0.90External closing pair is T 2103-A 2611
Stack -1.30External closing pair is T 2104-A 2610
Stack -1.40External closing pair is A 2105-T 2609
Helix -3.60 4 base pairs.
Interior loop 1.70External closing pair is T 2106-G 2608
Stack -2.20External closing pair is A 2108-T 2606
Stack -2.10External closing pair is C 2109-G 2605
Stack -1.10External closing pair is A 2110-T 2604
Helix -5.40 4 base pairs.
Bulge loop 2.50External closing pair is T 2111-A 2603
Stack -2.20External closing pair is A 2112-T 2601
Stack -3.30External closing pair is C 2113-G 2600
Stack -2.10External closing pair is C 2114-G 2599
Helix -7.60 4 base pairs.
Multi-loop 4.40External closing pair is A 2115-T 2598
6 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 2118-T 2137
Stack -2.50External closing pair is G 2119-T 2136
Stack -2.10External closing pair is C 2120-G 2135
Stack -0.90External closing pair is A 2121-T 2134
Stack -2.20External closing pair is A 2122-T 2133
Stack -3.30External closing pair is C 2123-G 2132
Helix -11.50 7 base pairs.
Hairpin loop 3.90Closing pair is C 2124-G 2131
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.30External closing pair is T 2052-A 2073
Stack -1.40External closing pair is A 2053-T 2072
Stack 0.30External closing pair is T 2054-G 2071
Stack -2.50External closing pair is G 2055-T 2070
Stack -3.30External closing pair is C 2056-G 2069
Stack -2.10External closing pair is C 2057-G 2068
Stack -0.90External closing pair is A 2058-T 2067
Stack -1.40External closing pair is A 2059-T 2066
Helix -12.60 9 base pairs.
Hairpin loop 5.10Closing pair is T 2060-G 2065
Stack -3.40External closing pair is G 2030-C 2049
Stack -2.10External closing pair is C 2031-G 2048
Stack -1.40External closing pair is T 2032-G 2047
Helix -6.90 4 base pairs.
Bulge loop 1.60External closing pair is G 2033-C 2046
Stack -2.10External closing pair is T 2034-A 2044
Stack -2.40External closing pair is G 2035-C 2043
Helix -4.50 3 base pairs.
Hairpin loop 5.30Closing pair is A 2036-T 2042
Stack -0.90External closing pair is A 1968-T 2008
Stack -1.10External closing pair is A 1969-T 2007
Stack -1.30External closing pair is T 1970-A 2006
Helix -3.30 4 base pairs.
Interior loop 1.70External closing pair is T 1971-G 2005
Stack -1.30External closing pair is T 1973-A 2003
Stack -0.60External closing pair is A 1974-T 2002
Stack -1.40External closing pair is G 1975-T 2001
Stack -0.90External closing pair is T 1976-A 2000
Stack -0.90External closing pair is T 1977-A 1999
Stack -2.40External closing pair is T 1978-A 1998
Helix -7.50 7 base pairs.
Interior loop 0.40External closing pair is C 1979-G 1997
Stack -2.40External closing pair is G 1981-C 1995
Stack -0.90External closing pair is A 1982-T 1994
Helix -3.30 3 base pairs.
Hairpin loop 5.90Closing pair is A 1983-T 1993
Stack -1.30External closing pair is G 108-T 1947
Stack -2.10External closing pair is A 109-T 1946
Stack -2.20External closing pair is G 110-C 1945
Stack -2.10External closing pair is T 111-A 1944
Stack -3.40External closing pair is G 112-C 1943
Stack -3.30External closing pair is C 113-G 1942
Helix -14.40 7 base pairs.
Multi-loop -0.10External closing pair is C 114-G 1941
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 165-G 1937
Stack -2.40External closing pair is T 166-A 1936
Stack -2.10External closing pair is C 167-G 1935
Helix -6.60 4 base pairs.
Multi-loop 4.00External closing pair is T 168-G 1934
7 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 190-T 1932
Stack -2.50External closing pair is G 191-T 1931
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 1930
Stack -1.30External closing pair is T 194-A 1929
Stack -0.90External closing pair is A 195-T 1928
Stack -0.90External closing pair is A 196-T 1927
Stack -0.60External closing pair is A 197-T 1926
Stack -2.50External closing pair is G 198-T 1925
Stack -3.30External closing pair is C 199-G 1924
Stack -2.40External closing pair is C 200-G 1923
Helix -11.90 8 base pairs.
Interior loop -1.00External closing pair is G 201-C 1922
Stack -1.40External closing pair is A 203-T 1920
Stack -1.40External closing pair is T 204-G 1919
Stack -2.40External closing pair is G 205-C 1918
Stack -2.10External closing pair is A 206-T 1917
Stack -2.20External closing pair is G 207-C 1916
Stack -0.90External closing pair is T 208-A 1915
Stack -2.10External closing pair is T 209-A 1914
Stack -2.20External closing pair is G 210-C 1913
Helix -14.70 9 base pairs.
Multi-loop 3.60External closing pair is T 211-A 1912
9 ss bases & 4 closing helices.
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -0.90External closing pair is T 212-A 1868
Stack -2.10External closing pair is T 213-A 1867
Stack -2.40External closing pair is G 214-C 1866
Helix -5.40 4 base pairs.
Multi-loop 2.80External closing pair is A 215-T 1865
3 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 850-C 1863
Stack -2.20External closing pair is A 851-T 1862
Stack -2.10External closing pair is C 852-G 1861
Stack -0.90External closing pair is A 853-T 1860
Stack -2.10External closing pair is A 854-T 1859
Stack -2.40External closing pair is G 855-C 1858
Helix -12.10 7 base pairs.
Bulge loop 4.60External closing pair is A 856-T 1857
Stack -0.90External closing pair is A 857-T 1852
Stack -0.90External closing pair is A 858-T 1851
Stack -1.40External closing pair is A 859-T 1850
Helix -3.20 4 base pairs.
Interior loop 1.10External closing pair is T 860-G 1849
Stack -1.40External closing pair is C 863-G 1846
Stack -2.10External closing pair is G 864-T 1845
Stack -2.20External closing pair is G 865-C 1844
Stack -1.30External closing pair is T 866-A 1843
Helix -7.00 5 base pairs.
Bulge loop 5.60External closing pair is A 867-T 1842
Stack -0.90External closing pair is T 875-A 1841
Stack -1.30External closing pair is T 876-A 1840
Stack -1.10External closing pair is A 877-T 1839
Stack -0.90External closing pair is T 878-A 1838
Stack -1.30External closing pair is T 879-A 1837
Stack -1.00External closing pair is T 880-G 1836
Stack -1.10External closing pair is A 881-T 1835
Stack -2.10External closing pair is T 882-A 1834
Helix -9.70 9 base pairs.
Multi-loop 0.20External closing pair is G 883-C 1833
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1694-G 1815
Stack -2.40External closing pair is T 1695-A 1814
Stack -3.30External closing pair is C 1696-G 1813
Stack -2.10External closing pair is C 1697-G 1812
Helix -9.90 5 base pairs.
Multi-loop 3.40External closing pair is A 1698-T 1811
9 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is G 1701-C 1752
Stack -2.20External closing pair is A 1702-T 1751
Helix -4.60 3 base pairs.
Bulge loop 1.40External closing pair is C 1703-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -4.80 3 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.30External closing pair is G 885-C 1687
Stack -3.40External closing pair is G 886-C 1686
Stack -2.10External closing pair is C 887-G 1685
Stack -1.00External closing pair is T 888-G 1684
Helix -9.80 5 base pairs.
Multi-loop 1.70External closing pair is A 889-T 1683
6 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 1664-C 1679
Stack -0.90External closing pair is A 1665-T 1678
Stack -2.10External closing pair is A 1666-T 1677
Stack -2.50External closing pair is G 1667-C 1676
Stack -1.00External closing pair is T 1668-G 1675
Helix -8.90 6 base pairs.
Hairpin loop 5.30Closing pair is A 1669-T 1674
Stack -2.20External closing pair is G 891-C 1661
Stack -0.90External closing pair is T 892-A 1660
Stack -0.90External closing pair is T 893-A 1659
Stack -2.40External closing pair is T 894-A 1658
Helix -6.40 5 base pairs.
Multi-loop -0.70External closing pair is C 895-G 1657
7 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 950-C 1655
Helix -2.40 2 base pairs.
Interior loop 2.30External closing pair is A 951-T 1654
Stack -2.50External closing pair is G 955-T 1651
Stack -2.10External closing pair is C 956-G 1650
Helix -4.60 3 base pairs.
Multi-loop 3.30External closing pair is T 957-A 1649
8 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -2.10External closing pair is T 963-A 1631
Stack -3.40External closing pair is G 964-C 1630
Stack -2.10External closing pair is C 965-G 1629
Helix -7.60 4 base pairs.
Interior loop 0.00External closing pair is T 966-A 1628
Stack -2.20External closing pair is A 969-T 1625
Helix -2.20 2 base pairs.
Multi-loop 1.10External closing pair is C 970-G 1624
15 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 979-C 1595
Helix -3.30 2 base pairs.
Bulge loop 1.60External closing pair is G 980-C 1594
Stack -0.90External closing pair is T 982-A 1593
Stack -2.10External closing pair is T 983-A 1592
Stack -3.30External closing pair is G 984-C 1591
Helix -6.30 4 base pairs.
Interior loop 3.30External closing pair is G 985-C 1590
Stack -0.90External closing pair is T 991-A 1586
Stack -2.40External closing pair is T 992-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 993-G 1584
Stack -2.10External closing pair is T 994-A 1582
Stack -2.20External closing pair is G 995-C 1581
Stack -1.30External closing pair is T 996-A 1580
Stack -1.10External closing pair is A 997-T 1579
Stack -1.30External closing pair is T 998-A 1578
Stack -0.50External closing pair is T 999-G 1577
Stack -0.60External closing pair is T 1000-G 1576
Stack -2.10External closing pair is T 1001-A 1575
Stack -2.20External closing pair is G 1002-C 1574
Helix -13.40 10 base pairs.
Multi-loop 3.90External closing pair is T 1003-A 1573
30 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1511-A 1567
Stack -0.90External closing pair is T 1512-A 1566
Stack -0.90External closing pair is T 1513-A 1565
Stack -0.90External closing pair is T 1514-A 1564
Stack -2.10External closing pair is T 1515-A 1563
Stack -3.40External closing pair is G 1516-C 1562
Stack -2.10External closing pair is C 1517-G 1561
Helix -11.20 8 base pairs.
Bulge loop 3.70External closing pair is A 1518-T 1560
Stack -3.40External closing pair is G 1522-C 1559
Stack -2.10External closing pair is C 1523-G 1558
Helix -5.50 3 base pairs.
Interior loop 1.70External closing pair is A 1524-T 1557
Stack -1.30External closing pair is T 1526-A 1555
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -7.90 6 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -1.30External closing pair is G 1024-T 1505
Stack -2.20External closing pair is A 1025-T 1504
Stack -2.10External closing pair is C 1026-G 1503
Stack -0.90External closing pair is T 1027-A 1502
Stack -2.10External closing pair is T 1028-A 1501
Stack -3.40External closing pair is G 1029-C 1500
Stack -2.10External closing pair is C 1030-G 1499
Helix -14.10 8 base pairs.
Multi-loop 4.70External closing pair is T 1031-A 1498
14 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -0.90External closing pair is A 1121-T 1455
Stack -2.10External closing pair is A 1122-T 1454
Helix -3.00 3 base pairs.
Bulge loop 1.40External closing pair is G 1123-C 1453
Stack -2.10External closing pair is A 1124-T 1451
Stack -1.50External closing pair is G 1125-C 1450
Stack -1.30External closing pair is G 1126-T 1449
Stack -2.20External closing pair is A 1127-T 1448
Stack -1.40External closing pair is C 1128-G 1447
Stack -2.10External closing pair is G 1129-T 1446
Stack -2.40External closing pair is G 1130-C 1445
Stack -0.60External closing pair is A 1131-T 1444
Stack -1.40External closing pair is G 1132-T 1443
Stack -1.30External closing pair is T 1133-A 1442
Helix -16.30 11 base pairs.
Interior loop 1.70External closing pair is T 1134-G 1441
Stack -2.40External closing pair is T 1136-A 1439
Helix -2.40 2 base pairs.
Multi-loop 1.20External closing pair is C 1137-G 1438
30 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1367-A 1420
Stack -2.10External closing pair is C 1368-G 1419
Stack -2.10External closing pair is A 1369-T 1418
Stack -3.40External closing pair is G 1370-C 1417
Helix -10.00 5 base pairs.
Multi-loop 3.10External closing pair is C 1371-G 1416
16 ss bases & 3 closing helices.
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -3.40External closing pair is G 1147-C 1362
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1148-G 1361
Stack -1.30External closing pair is G 1150-T 1359
Stack -1.10External closing pair is A 1151-T 1358
Stack -1.30External closing pair is T 1152-A 1357
Stack -1.10External closing pair is A 1153-T 1356
Stack -1.30External closing pair is T 1154-A 1355
Helix -6.10 6 base pairs.
Interior loop 3.70External closing pair is T 1155-G 1354
Stack -1.30External closing pair is T 1159-A 1351
Stack -1.10External closing pair is A 1160-T 1350
Stack -1.30External closing pair is T 1161-A 1349
Stack -0.90External closing pair is A 1162-T 1348
Helix -4.60 5 base pairs.
Interior loop 2.50External closing pair is A 1163-T 1347
Stack -2.40External closing pair is G 1165-C 1344
Stack -1.10External closing pair is A 1166-T 1343
Stack -1.00External closing pair is T 1167-A 1342
Stack -1.30External closing pair is G 1168-T 1341
Stack -0.90External closing pair is A 1169-T 1340
Stack -0.90External closing pair is A 1170-T 1339
Helix -7.60 7 base pairs.
Multi-loop 1.40External closing pair is A 1171-T 1338
28 ss bases & 4 closing helices.
Stack -2.20External closing pair is A 1300-T 1330
Stack -2.40External closing pair is C 1301-G 1329
Helix -4.60 3 base pairs.
Bulge loop 0.50External closing pair is G 1302-C 1328
Stack -2.20External closing pair is G 1303-C 1326
Stack -1.30External closing pair is T 1304-A 1325
Helix -3.50 3 base pairs.
Interior loop 3.00External closing pair is A 1305-T 1324
Stack -0.90External closing pair is T 1310-A 1321
Stack -2.10External closing pair is T 1311-A 1320
Helix -3.00 3 base pairs.
Hairpin loop 4.30Closing pair is G 1312-C 1319
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -1.30External closing pair is T 1032-A 1114
Stack -0.60External closing pair is T 1033-G 1113
Stack -2.10External closing pair is T 1034-A 1112
Stack -2.20External closing pair is G 1035-C 1111
Stack -2.40External closing pair is T 1036-A 1110
Stack -2.10External closing pair is C 1037-G 1109
Stack -2.10External closing pair is T 1038-A 1108
Helix -12.80 8 base pairs.
Interior loop 3.40External closing pair is G 1039-C 1107
Stack -2.40External closing pair is T 1051-A 1095
Stack -2.10External closing pair is C 1052-G 1094
Stack -2.10External closing pair is T 1053-A 1093
Helix -6.60 4 base pairs.
Bulge loop 5.60External closing pair is G 1054-C 1092
Stack -2.10External closing pair is T 1067-A 1091
Stack -2.40External closing pair is G 1068-C 1090
Stack -0.90External closing pair is A 1069-T 1089
Helix -5.40 4 base pairs.
Interior loop 2.60External closing pair is A 1070-T 1088
Stack -2.10External closing pair is T 1073-A 1084
Helix -2.10 2 base pairs.
Hairpin loop 3.20Closing pair is G 1074-C 1083
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -0.90External closing pair is A 218-T 849
Stack -1.10External closing pair is A 219-T 848
Stack -1.00External closing pair is T 220-A 847
Stack -2.50External closing pair is G 221-T 846
Helix -5.50 5 base pairs.
Multi-loop 2.80External closing pair is C 222-G 845
13 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 247-A 840
Stack -2.10External closing pair is C 248-G 839
Stack -2.10External closing pair is T 249-A 838
Helix -6.60 4 base pairs.
Bulge loop 4.50External closing pair is G 250-C 837
Stack -2.10External closing pair is T 256-A 836
Stack -3.30External closing pair is G 257-C 835
Stack -2.40External closing pair is G 258-C 834
Stack -0.90External closing pair is A 259-T 833
Helix -8.70 5 base pairs.
Interior loop 3.20External closing pair is A 260-T 832
Stack -2.10External closing pair is A 268-T 824
Stack -3.40External closing pair is G 269-C 823
Helix -5.50 3 base pairs.
Interior loop 4.70External closing pair is C 270-G 822
Stack -2.10External closing pair is A 276-T 820
Stack -2.40External closing pair is G 277-C 819
Stack -0.90External closing pair is A 278-T 818
Helix -5.40 4 base pairs.
Bulge loop 1.70External closing pair is A 279-T 817
Stack -3.40External closing pair is G 280-C 815
Stack -3.30External closing pair is C 281-G 814
Stack -2.40External closing pair is C 282-G 813
Stack -3.40External closing pair is G 283-C 812
Helix -12.50 5 base pairs.
Multi-loop 0.80External closing pair is C 284-G 811
26 ss bases & 3 closing helices.
Stack -2.40External closing pair is C 350-G 806
Stack -2.40External closing pair is G 351-C 805
Helix -4.80 3 base pairs.
Bulge loop 1.60External closing pair is A 352-T 804
Stack -2.10External closing pair is C 353-G 802
Stack -0.90External closing pair is T 354-A 801
Stack -0.90External closing pair is T 355-A 800
Stack -1.00External closing pair is T 356-A 799
Helix -4.90 5 base pairs.
Multi-loop 2.00External closing pair is G 357-T 798
10 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 417-C 789
Stack -3.30External closing pair is C 418-G 788
Stack -2.10External closing pair is C 419-G 787
Stack -0.90External closing pair is A 420-T 786
Helix -9.70 5 base pairs.
Multi-loop 3.30External closing pair is A 421-T 785
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 762-T 779
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -7.80 5 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -3.30External closing pair is C 427-G 761
Stack -2.10External closing pair is C 428-G 760
Helix -5.40 3 base pairs.
Bulge loop 4.20External closing pair is A 429-T 759
Stack -2.20External closing pair is A 430-T 755
Helix -2.20 2 base pairs.
Interior loop -3.50External closing pair is C 431-G 754
Stack -0.90External closing pair is A 434-T 751
Stack -2.20External closing pair is A 435-T 750
Stack -2.10External closing pair is C 436-G 749
Helix -5.20 4 base pairs.
Multi-loop 4.40External closing pair is T 437-A 748
5 ss bases & 3 closing helices.
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -10.00 6 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -1.40External closing pair is G 439-T 629
Stack -2.10External closing pair is T 440-A 628
Stack -2.20External closing pair is G 441-C 627
Stack -2.40External closing pair is T 442-A 626
Helix -8.10 5 base pairs.
Interior loop 2.00External closing pair is C 443-G 625
Stack -0.90External closing pair is A 447-T 621
Stack -0.90External closing pair is A 448-T 620
Stack -2.20External closing pair is A 449-T 619
Stack -1.40External closing pair is C 450-G 618
Stack -2.10External closing pair is G 451-T 617
Helix -7.50 6 base pairs.
Interior loop 3.30External closing pair is G 452-C 616
Stack -0.90External closing pair is A 458-T 613
Stack -1.40External closing pair is A 459-T 612
Stack 0.30External closing pair is T 460-G 611
Stack -2.10External closing pair is G 461-T 610
Stack -2.40External closing pair is G 462-C 609
Stack -2.10External closing pair is A 463-T 608
Stack -2.40External closing pair is G 464-C 607
Helix -11.00 8 base pairs.
Interior loop 4.10External closing pair is A 465-T 606
Stack -1.00External closing pair is T 467-A 602
Stack -1.30External closing pair is G 468-T 601
Stack -0.60External closing pair is A 469-T 600
Stack -1.30External closing pair is G 470-T 599
Stack -0.90External closing pair is A 471-T 598
Stack -0.90External closing pair is A 472-T 597
Helix -6.00 7 base pairs.
Multi-loop 3.00External closing pair is A 473-T 596
19 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 519-C 589
Stack -2.20External closing pair is G 520-C 588
Stack -1.00External closing pair is T 521-A 587
Stack -1.30External closing pair is G 522-T 586
Helix -7.80 5 base pairs.
Bulge loop 3.80External closing pair is A 523-T 585
Stack -2.10External closing pair is A 524-T 582
Stack -3.40External closing pair is G 525-C 581
Helix -5.50 3 base pairs.
Interior loop 4.10External closing pair is C 526-G 580
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 486-A 517
Stack -1.10External closing pair is A 487-T 516
Stack -0.90External closing pair is T 488-A 515
Stack -0.90External closing pair is T 489-A 514
Stack -1.30External closing pair is T 490-A 513
Stack -1.40External closing pair is T 491-G 512
Stack -3.30External closing pair is G 492-C 511
Helix -10.20 8 base pairs.
Hairpin loop 5.90Closing pair is G 493-C 510
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -3.30External closing pair is C 298-G 340
Stack -2.10External closing pair is C 299-G 339
Stack -0.90External closing pair is T 300-A 338
Helix -6.30 4 base pairs.
Interior loop 3.10External closing pair is T 301-A 337
Stack -1.40External closing pair is A 311-T 327
Stack -0.60External closing pair is T 312-G 326
Stack -0.90External closing pair is T 313-A 325
Stack -1.00External closing pair is T 314-A 324
Stack -1.40External closing pair is G 315-T 323
Helix -5.30 6 base pairs.
Hairpin loop 5.50Closing pair is T 316-A 322
Stack -1.00External closing pair is T 232-G 246
Stack -1.40External closing pair is A 233-T 245
Stack -1.00External closing pair is T 234-G 244
Stack -2.10External closing pair is A 235-T 243
Stack -3.30External closing pair is G 236-C 242
Helix -8.80 6 base pairs.
Hairpin loop 5.70Closing pair is G 237-C 241
Stack -2.10External closing pair is A 173-T 187
Stack -2.20External closing pair is G 174-C 186
Stack -1.30External closing pair is T 175-A 185
Stack -1.10External closing pair is A 176-T 184
Helix -6.70 5 base pairs.
Hairpin loop 5.50Closing pair is T 177-A 183
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25

Structure 45
seq.txt
ΔG = -798.00

Structural elementδGInformation
External loop -0.60 23 ss bases & 1 closing helices.
Stack -1.10External closing pair is A 22-T 3136
Stack -1.30External closing pair is T 23-A 3135
Stack -0.60External closing pair is A 24-T 3134
Stack -1.40External closing pair is G 25-T 3133
Stack -1.30External closing pair is T 26-A 3132
Helix -5.70 6 base pairs.
Multi-loop 2.70External closing pair is A 27-T 3131
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.40External closing pair is G 39-C 3109
Stack -3.30External closing pair is C 40-G 3108
Stack -3.30External closing pair is C 41-G 3107
Stack -2.10External closing pair is C 42-G 3106
Stack -0.90External closing pair is T 43-A 3105
Stack -0.90External closing pair is T 44-A 3104
Stack -2.10External closing pair is T 45-A 3103
Helix -16.00 8 base pairs.
Bulge loop 1.60External closing pair is G 46-C 3102
Stack -0.90External closing pair is T 48-A 3101
Stack -1.00External closing pair is T 49-A 3100
Stack -2.50External closing pair is G 50-T 3099
Helix -4.40 4 base pairs.
Multi-loop 1.60External closing pair is C 51-G 3098
19 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1092-G 3087
Stack -2.10External closing pair is A 1093-T 3086
Helix -4.20 3 base pairs.
Interior loop 1.10External closing pair is G 1094-C 3085
Stack -2.40External closing pair is T 1096-A 3083
Stack -2.10External closing pair is C 1097-G 3082
Helix -4.50 3 base pairs.
Multi-loop 1.10External closing pair is A 1098-T 3081
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1115-G 3076
Stack -0.90External closing pair is T 1116-A 3075
Stack -0.90External closing pair is T 1117-A 3074
Stack -2.10External closing pair is T 1118-A 3073
Helix -6.00 5 base pairs.
Multi-loop 1.90External closing pair is G 1119-C 3072
18 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 3024-A 3058
Helix -2.10 2 base pairs.
Interior loop 1.90External closing pair is G 3025-C 3057
Stack -2.10External closing pair is G 3028-T 3054
Stack -2.20External closing pair is G 3029-C 3053
Stack -2.40External closing pair is T 3030-A 3052
Stack -2.10External closing pair is C 3031-G 3051
Helix -8.80 5 base pairs.
Interior loop 2.20External closing pair is A 3032-T 3050
Stack -2.10External closing pair is T 3035-A 3047
Stack -3.30External closing pair is G 3036-C 3046
Stack -2.50External closing pair is G 3037-C 3045
Helix -7.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 3038-G 3044
Stack -1.30External closing pair is G 1123-T 3021
Stack -2.10External closing pair is A 1124-T 3020
Helix -3.40 3 base pairs.
Interior loop -0.80External closing pair is G 1125-C 3019
Stack -2.40External closing pair is C 1128-G 3016
Stack -3.30External closing pair is G 1129-C 3015
Stack -2.40External closing pair is G 1130-C 3014
Stack -2.10External closing pair is A 1131-T 3013
Stack -2.50External closing pair is G 1132-C 3012
Helix -12.70 6 base pairs.
Bulge loop 5.90External closing pair is T 1133-G 3011
Stack -2.20External closing pair is A 1144-T 3010
Stack -2.10External closing pair is C 1145-G 3009
Stack -2.10External closing pair is A 1146-T 3008
Helix -6.40 4 base pairs.
Bulge loop 1.40External closing pair is G 1147-C 3007
Stack -2.10External closing pair is A 1149-T 3006
Stack -2.40External closing pair is G 1150-C 3005
Stack -1.40External closing pair is A 1151-T 3004
Stack -1.00External closing pair is T 1152-G 3003
Helix -6.90 5 base pairs.
Bulge loop 3.80External closing pair is A 1153-T 3002
Stack -1.30External closing pair is T 1154-A 2999
Stack -1.00External closing pair is T 1155-G 2998
Stack -1.40External closing pair is A 1156-T 2997
Helix -3.70 4 base pairs.
Interior loop 1.90External closing pair is T 1157-G 2996
Stack -1.00External closing pair is T 1161-G 2991
Stack -0.90External closing pair is A 1162-T 2990
Stack -2.10External closing pair is A 1163-T 2989
Stack -1.50External closing pair is G 1164-C 2988
Helix -5.50 5 base pairs.
Multi-loop 2.30External closing pair is G 1165-T 2987
5 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 2710-C 2984
Stack -1.40External closing pair is C 2711-G 2983
Stack -2.50External closing pair is G 2712-T 2982
Stack -2.10External closing pair is C 2713-G 2981
Stack -2.20External closing pair is A 2714-T 2980
Stack -2.40External closing pair is C 2715-G 2979
Stack -3.40External closing pair is G 2716-C 2978
Helix -17.40 8 base pairs.
Bulge loop 5.30External closing pair is C 2717-G 2977
Stack -2.10External closing pair is A 2718-T 2967
Stack -3.40External closing pair is G 2719-C 2966
Stack -2.10External closing pair is C 2720-G 2965
Stack -1.30External closing pair is T 2721-A 2964
Stack -0.90External closing pair is A 2722-T 2963
Stack -1.10External closing pair is A 2723-T 2962
Stack -0.90External closing pair is T 2724-A 2961
Helix -11.80 8 base pairs.
Multi-loop 3.30External closing pair is T 2725-A 2960
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 2941-G 2958
Stack -2.10External closing pair is C 2942-G 2957
Stack -1.00External closing pair is T 2943-A 2956
Stack -2.10External closing pair is G 2944-T 2955
Helix -8.50 5 base pairs.
Hairpin loop 4.30Closing pair is G 2945-C 2954
Interior loop -4.10External closing pair is G 2727-C 2926
Stack -2.10External closing pair is C 2730-G 2923
Stack -2.20External closing pair is A 2731-T 2922
Helix -4.30 3 base pairs.
Multi-loop 1.50External closing pair is C 2732-G 2921
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2734-C 2765
Stack -2.10External closing pair is C 2735-G 2764
Helix -5.50 3 base pairs.
Interior loop 3.40External closing pair is A 2736-T 2763
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -2.10External closing pair is T 1167-A 2707
Stack -2.40External closing pair is G 1168-C 2706
Stack -0.90External closing pair is A 1169-T 2705
Stack -0.90External closing pair is A 1170-T 2704
Stack -2.20External closing pair is A 1171-T 2703
Helix -8.50 6 base pairs.
Interior loop -4.40External closing pair is C 1172-G 2702
Stack -3.30External closing pair is C 1175-G 2699
Helix -3.30 2 base pairs.
Interior loop 1.20External closing pair is C 1176-G 2698
Stack -2.10External closing pair is C 1178-G 2695
Stack -2.10External closing pair is A 1179-T 2694
Stack -2.40External closing pair is G 1180-C 2693
Helix -6.60 4 base pairs.
Interior loop 1.10External closing pair is A 1181-T 2692
Stack -3.30External closing pair is C 1183-G 2690
Stack -2.10External closing pair is C 1184-G 2689
Helix -5.40 3 base pairs.
Bulge loop 3.30External closing pair is A 1185-T 2688
Stack -2.10External closing pair is C 1186-G 2685
Stack -1.10External closing pair is A 1187-T 2684
Stack -0.90External closing pair is T 1188-A 2683
Helix -4.10 4 base pairs.
Interior loop 4.10External closing pair is T 1189-A 2682
Stack -1.40External closing pair is T 1193-G 2680
Helix -1.40 2 base pairs.
Bulge loop 0.50External closing pair is G 1194-C 2679
Stack -2.40External closing pair is G 1196-C 2678
Stack -1.10External closing pair is A 1197-T 2677
Stack -2.40External closing pair is T 1198-A 2676
Stack -2.10External closing pair is C 1199-G 2675
Stack -1.00External closing pair is T 1200-G 2674
Stack -0.90External closing pair is A 1201-T 2673
Stack -2.20External closing pair is A 1202-T 2672
Helix -12.10 8 base pairs.
Multi-loop 1.80External closing pair is C 1203-G 2671
22 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 1302-C 2660
Stack -1.40External closing pair is G 1303-T 2659
Stack -1.30External closing pair is T 1304-A 2658
Stack -1.10External closing pair is A 1305-T 2657
Stack -1.30External closing pair is T 1306-A 2656
Stack -1.10External closing pair is A 1307-T 2655
Stack -0.90External closing pair is T 1308-A 2654
Stack -0.90External closing pair is T 1309-A 2653
Helix -9.50 9 base pairs.
Bulge loop 2.80External closing pair is T 1310-A 2652
Stack -1.30External closing pair is G 1312-T 2651
Helix -1.30 2 base pairs.
Interior loop 1.70External closing pair is A 1313-T 2650
Stack -2.40External closing pair is T 1315-A 2648
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is C 1316-G 2647
Stack -2.20External closing pair is A 1318-T 2645
Helix -2.20 2 base pairs.
Multi-loop 1.80External closing pair is C 1319-G 2644
14 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 2624-T 2642
Stack -1.30External closing pair is G 2625-T 2641
Stack -2.10External closing pair is A 2626-T 2640
Stack -3.40External closing pair is G 2627-C 2639
Stack -2.40External closing pair is C 2628-G 2638
Helix -9.80 6 base pairs.
Hairpin loop 4.40Closing pair is G 2629-C 2637
Stack -0.90External closing pair is T 1322-A 2612
Stack -0.90External closing pair is T 1323-A 2611
Stack -1.30External closing pair is T 1324-A 2610
Stack -2.20External closing pair is A 1325-T 2609
Helix -5.30 5 base pairs.
Interior loop 1.70External closing pair is C 1326-G 2608
Stack -1.40External closing pair is C 1328-G 2605
Stack -1.40External closing pair is G 1329-T 2604
Stack -1.30External closing pair is T 1330-A 2603
Stack -1.00External closing pair is T 1331-G 2602
Stack -2.20External closing pair is A 1332-T 2601
Stack -3.30External closing pair is C 1333-G 2600
Stack -2.10External closing pair is C 1334-G 2599
Helix -12.70 8 base pairs.
Multi-loop 4.40External closing pair is A 1335-T 2598
28 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -0.50External closing pair is G 1360-T 2137
Stack -2.50External closing pair is G 1361-T 2136
Stack -2.10External closing pair is C 1362-G 2135
Stack -0.90External closing pair is A 1363-T 2134
Stack -1.40External closing pair is A 1364-T 2133
Stack -1.50External closing pair is T 1365-G 2132
Helix -8.90 7 base pairs.
Multi-loop 3.80External closing pair is C 1366-G 2131
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1386-A 2130
Stack -2.40External closing pair is T 1387-A 2129
Stack -3.30External closing pair is C 1388-G 2128
Stack -2.40External closing pair is C 1389-G 2127
Stack -2.20External closing pair is G 1390-C 2126
Stack -2.10External closing pair is T 1391-A 2125
Helix -13.30 7 base pairs.
Bulge loop 1.60External closing pair is G 1392-C 2124
Stack -0.90External closing pair is T 1393-A 2122
Stack -2.10External closing pair is T 1394-A 2121
Stack -3.40External closing pair is G 1395-C 2120
Stack -3.30External closing pair is C 1396-G 2119
Stack -2.10External closing pair is C 1397-G 2118
Helix -11.80 6 base pairs.
Multi-loop 2.80External closing pair is A 1398-T 2117
14 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2032-A 2110
Stack -2.20External closing pair is G 2033-C 2109
Stack -2.10External closing pair is T 2034-A 2108
Stack -2.40External closing pair is G 2035-C 2107
Helix -8.80 5 base pairs.
Multi-loop 1.90External closing pair is A 2036-T 2106
19 ss bases & 4 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -3.30External closing pair is G 2047-C 2057
Stack -3.40External closing pair is G 2048-C 2056
Helix -6.70 3 base pairs.
Hairpin loop 3.60Closing pair is C 2049-G 2055
Stack -2.10External closing pair is C 1992-G 2026
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -12.10 10 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.40External closing pair is G 1401-C 1990
Stack -2.10External closing pair is C 1402-G 1989
Stack -0.90External closing pair is A 1403-T 1988
Stack -1.10External closing pair is A 1404-T 1987
Helix -7.50 5 base pairs.
Multi-loop 4.40External closing pair is T 1405-A 1986
6 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1652-A 1984
Stack -0.90External closing pair is T 1653-A 1983
Stack -2.40External closing pair is T 1654-A 1982
Helix -4.20 4 base pairs.
Interior loop 0.40External closing pair is C 1655-G 1981
Stack -2.40External closing pair is G 1657-C 1979
Stack -0.90External closing pair is A 1658-T 1978
Stack -0.90External closing pair is A 1659-T 1977
Stack -2.20External closing pair is A 1660-T 1976
Stack -2.10External closing pair is C 1661-G 1975
Helix -8.50 6 base pairs.
Multi-loop 2.60External closing pair is T 1662-A 1974
9 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 1664-C 1949
Stack -0.90External closing pair is A 1665-T 1948
Stack -0.60External closing pair is A 1666-T 1947
Helix -3.90 4 base pairs.
Interior loop 4.00External closing pair is G 1667-T 1946
Stack -2.10External closing pair is T 1670-A 1944
Stack -3.40External closing pair is G 1671-C 1943
Stack -3.30External closing pair is C 1672-G 1942
Stack -2.10External closing pair is C 1673-G 1941
Helix -10.90 5 base pairs.
Bulge loop 3.80External closing pair is T 1674-A 1940
Stack -0.90External closing pair is T 1677-A 1939
Stack -2.40External closing pair is T 1678-A 1938
Stack -2.10External closing pair is C 1679-G 1937
Stack -1.30External closing pair is T 1680-A 1936
Stack -1.50External closing pair is T 1681-G 1935
Stack -2.10External closing pair is C 1682-G 1934
Stack -1.00External closing pair is T 1683-A 1933
Stack -0.50External closing pair is G 1684-T 1932
Stack -2.50External closing pair is G 1685-T 1931
Helix -14.30 10 base pairs.
Multi-loop 1.90External closing pair is C 1686-G 1930
24 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1873-T 1927
Stack -0.90External closing pair is A 1874-T 1926
Stack -2.20External closing pair is A 1875-T 1925
Stack -2.10External closing pair is C 1876-G 1924
Stack -1.40External closing pair is T 1877-G 1923
Stack -3.40External closing pair is G 1878-C 1922
Helix -10.90 7 base pairs.
Interior loop 4.80External closing pair is C 1879-G 1921
Stack -2.40External closing pair is T 1888-A 1910
Stack -3.30External closing pair is C 1889-G 1909
Stack -2.10External closing pair is C 1890-G 1908
Stack -1.30External closing pair is T 1891-A 1907
Helix -9.10 5 base pairs.
Interior loop 1.70External closing pair is T 1892-G 1906
Stack -1.30External closing pair is G 1894-T 1904
Helix -1.30 2 base pairs.
Hairpin loop 4.80Closing pair is A 1895-T 1903
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -2.20External closing pair is A 1411-T 1651
Stack -2.10External closing pair is C 1412-G 1650
Stack -2.40External closing pair is T 1413-A 1649
Helix -6.70 4 base pairs.
Multi-loop 2.30External closing pair is C 1414-G 1648
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1634-T 1647
Stack -1.10External closing pair is A 1635-T 1646
Stack -2.40External closing pair is T 1636-A 1645
Stack -2.40External closing pair is C 1637-G 1644
Helix -6.80 5 base pairs.
Hairpin loop 0.70Closing pair is G 1638-C 1643
Stack -3.40External closing pair is G 1416-C 1630
Stack -2.10External closing pair is C 1417-G 1629
Stack -2.10External closing pair is T 1418-A 1628
Stack -2.40External closing pair is G 1419-C 1627
Stack -0.90External closing pair is A 1420-T 1626
Helix -10.90 6 base pairs.
Multi-loop 2.70External closing pair is A 1421-T 1625
29 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -2.40External closing pair is G 1438-C 1590
Stack -0.90External closing pair is A 1439-T 1589
Stack -2.10External closing pair is A 1440-T 1588
Helix -5.40 4 base pairs.
Bulge loop 1.60External closing pair is G 1441-C 1587
Stack -0.90External closing pair is T 1443-A 1586
Stack -2.40External closing pair is T 1444-A 1585
Helix -3.30 3 base pairs.
Bulge loop 1.70External closing pair is C 1445-G 1584
Stack -2.10External closing pair is T 1446-A 1582
Stack -2.20External closing pair is G 1447-C 1581
Helix -4.30 3 base pairs.
Bulge loop 2.90External closing pair is T 1448-A 1580
Stack -2.40External closing pair is T 1449-A 1578
Stack -2.10External closing pair is C 1450-G 1577
Helix -4.50 3 base pairs.
Multi-loop 2.40External closing pair is T 1451-G 1576
24 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 1519-A 1565
Stack -0.90External closing pair is T 1520-A 1564
Stack -2.10External closing pair is T 1521-A 1563
Stack -3.40External closing pair is G 1522-C 1562
Stack -2.10External closing pair is C 1523-G 1561
Stack -2.10External closing pair is A 1524-T 1560
Stack -2.50External closing pair is G 1525-C 1559
Helix -14.00 8 base pairs.
Bulge loop 4.20External closing pair is T 1526-G 1558
Stack -1.00External closing pair is T 1527-G 1554
Stack -2.10External closing pair is A 1528-T 1553
Stack -2.20External closing pair is G 1529-C 1552
Stack -1.30External closing pair is T 1530-A 1551
Helix -6.60 5 base pairs.
Hairpin loop 6.00Closing pair is A 1531-T 1550
Stack -3.40External closing pair is G 1499-C 1517
Stack -2.10External closing pair is C 1500-G 1516
Stack -0.90External closing pair is A 1501-T 1515
Stack -0.60External closing pair is A 1502-T 1514
Helix -7.00 5 base pairs.
Hairpin loop 5.30Closing pair is G 1503-T 1513
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -1.10External closing pair is A 1373-T 1382
Stack -2.40External closing pair is T 1374-A 1381
Helix -3.50 3 base pairs.
Hairpin loop 3.80Closing pair is C 1375-G 1380
Stack -2.20External closing pair is G 1204-C 1289
Stack -1.00External closing pair is T 1205-A 1288
Stack -2.10External closing pair is G 1206-T 1287
Stack -3.40External closing pair is G 1207-C 1286
Helix -8.70 5 base pairs.
Interior loop 4.30External closing pair is C 1208-G 1285
Stack -2.40External closing pair is T 1215-A 1274
Stack -2.10External closing pair is C 1216-G 1273
Stack -2.10External closing pair is T 1217-A 1272
Helix -6.60 4 base pairs.
Interior loop 0.40External closing pair is G 1218-C 1271
Stack -2.40External closing pair is G 1220-C 1269
Stack -0.90External closing pair is A 1221-T 1268
Stack -0.90External closing pair is A 1222-T 1267
Stack -0.90External closing pair is A 1223-T 1266
Helix -5.10 5 base pairs.
Bulge loop 1.60External closing pair is A 1224-T 1265
Stack -2.10External closing pair is C 1226-G 1264
Stack -1.10External closing pair is A 1227-T 1263
Helix -3.20 3 base pairs.
Interior loop 4.50External closing pair is T 1228-A 1262
Stack -0.90External closing pair is T 1235-A 1256
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -8.30 6 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 54-A 1084
Helix -2.10 2 base pairs.
Multi-loop 2.30External closing pair is G 55-C 1083
10 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1015-G 1075
Stack -1.00External closing pair is T 1016-G 1074
Stack -2.10External closing pair is A 1017-T 1073
Stack -2.50External closing pair is G 1018-C 1072
Stack -0.60External closing pair is T 1019-G 1071
Stack -0.90External closing pair is T 1020-A 1070
Stack -1.30External closing pair is T 1021-A 1069
Helix -10.50 8 base pairs.
Multi-loop 2.60External closing pair is T 1022-G 1068
14 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1039-C 1055
Helix -3.40 2 base pairs.
Hairpin loop 4.80Closing pair is C 1040-G 1054
Stack -2.40External closing pair is G 1024-C 1037
Stack -2.20External closing pair is A 1025-T 1036
Helix -4.60 3 base pairs.
Hairpin loop 3.60Closing pair is C 1026-G 1035
Stack -1.30External closing pair is T 57-A 1012
Stack -0.60External closing pair is A 58-T 1011
Stack -0.50External closing pair is G 59-T 1010
Stack -1.40External closing pair is G 60-T 1009
Helix -3.80 5 base pairs.
Interior loop 1.70External closing pair is T 61-A 1008
Stack -1.30External closing pair is T 63-A 1006
Stack -2.10External closing pair is A 64-T 1005
Helix -3.40 3 base pairs.
Bulge loop 2.30External closing pair is G 65-C 1004
Stack -2.50External closing pair is G 67-T 1003
Stack -1.40External closing pair is C 68-G 1002
Stack -1.30External closing pair is G 69-T 1001
Stack -0.60External closing pair is A 70-T 1000
Stack -1.30External closing pair is G 71-T 999
Stack -1.10External closing pair is A 72-T 998
Stack -1.30External closing pair is T 73-A 997
Stack -2.20External closing pair is A 74-T 996
Helix -11.70 9 base pairs.
Bulge loop 4.80External closing pair is C 75-G 995
Stack -3.30External closing pair is C 76-G 985
Stack -2.10External closing pair is C 77-G 984
Stack -0.90External closing pair is A 78-T 983
Stack -1.10External closing pair is A 79-T 982
Stack -2.40External closing pair is T 80-A 981
Stack -3.30External closing pair is C 81-G 980
Helix -13.10 7 base pairs.
Multi-loop 1.00External closing pair is C 82-G 979
22 ss bases & 5 closing helices.
Stack -2.10External closing pair is G 949-T 974
Stack -2.40External closing pair is G 950-C 973
Stack -1.10External closing pair is A 951-T 972
Stack -2.10External closing pair is T 952-A 971
Stack -2.20External closing pair is G 953-C 970
Helix -9.90 6 base pairs.
Bulge loop 1.40External closing pair is T 954-A 969
Stack -2.10External closing pair is C 956-G 968
Stack -1.30External closing pair is T 957-A 967
Helix -3.40 3 base pairs.
Hairpin loop 5.60Closing pair is A 958-T 966
Stack -2.40External closing pair is G 898-C 945
Stack -0.90External closing pair is A 899-T 944
Stack -2.10External closing pair is A 900-T 943
Stack -3.30External closing pair is G 901-C 942
Helix -8.70 5 base pairs.
Interior loop -0.30External closing pair is G 902-C 941
Stack -3.40External closing pair is G 904-C 939
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 905-G 938
Stack -1.30External closing pair is T 911-A 932
Stack -0.90External closing pair is A 912-T 931
Helix -2.20 3 base pairs.
Hairpin loop 5.90Closing pair is A 913-T 930
Stack -2.10External closing pair is T 882-A 896
Stack -2.40External closing pair is G 883-C 895
Stack -0.60External closing pair is A 884-T 894
Stack -0.50External closing pair is G 885-T 893
Stack -2.50External closing pair is G 886-T 892
Helix -8.10 6 base pairs.
Hairpin loop 5.70Closing pair is C 887-G 891
Stack -2.10External closing pair is T 90-A 874
Stack -2.20External closing pair is G 91-C 873
Stack -0.90External closing pair is T 92-A 872
Stack -2.10External closing pair is T 93-A 871
Stack -2.50External closing pair is G 94-C 870
Stack -0.60External closing pair is T 95-G 869
Helix -10.40 7 base pairs.
Bulge loop 2.80External closing pair is T 96-A 868
Stack -2.50External closing pair is G 97-T 866
Stack -2.10External closing pair is C 98-G 865
Stack -1.40External closing pair is T 99-G 864
Stack -2.20External closing pair is G 100-C 863
Stack -0.90External closing pair is T 101-A 862
Helix -9.10 6 base pairs.
Multi-loop 4.80External closing pair is T 102-A 861
14 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 820-A 851
Stack -1.40External closing pair is C 821-G 850
Helix -3.80 3 base pairs.
Interior loop 1.70External closing pair is G 822-T 849
Stack -1.30External closing pair is T 824-A 847
Stack -2.20External closing pair is A 825-T 846
Helix -3.50 3 base pairs.
Interior loop 3.40External closing pair is C 826-G 845
Stack -0.90External closing pair is A 830-T 843
Stack -1.10External closing pair is A 831-T 842
Stack -0.90External closing pair is T 832-A 841
Stack -2.40External closing pair is T 833-A 840
Helix -5.30 5 base pairs.
Hairpin loop 4.60Closing pair is C 834-G 839
Stack -2.40External closing pair is G 108-C 819
Stack -0.60External closing pair is A 109-T 818
Stack -1.40External closing pair is G 110-T 817
Stack -2.10External closing pair is T 111-A 816
Stack -3.40External closing pair is G 112-C 815
Stack -3.30External closing pair is C 113-G 814
Stack -2.40External closing pair is C 114-G 813
Stack -3.40External closing pair is G 115-C 812
Helix -19.00 9 base pairs.
Multi-loop 1.90External closing pair is C 116-G 811
4 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 800-T 810
Stack -2.10External closing pair is A 801-T 809
Helix -3.00 3 base pairs.
Hairpin loop 3.70Closing pair is G 802-C 808
Stack -3.40External closing pair is G 118-C 796
Stack -2.10External closing pair is C 119-G 795
Stack -0.90External closing pair is T 120-A 794
Stack -1.30External closing pair is T 121-A 793
Helix -7.70 5 base pairs.
Multi-loop 3.90External closing pair is A 122-T 792
17 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 763-G 778
Stack -1.30External closing pair is T 764-A 777
Stack -2.20External closing pair is A 765-T 776
Helix -5.60 4 base pairs.
Hairpin loop 4.70Closing pair is C 766-G 775
Stack -2.40External closing pair is T 127-A 762
Stack -3.30External closing pair is C 128-G 761
Stack -1.40External closing pair is C 129-G 760
Helix -7.10 4 base pairs.
Bulge loop 2.40External closing pair is G 130-T 759
Stack -2.10External closing pair is T 131-A 757
Stack -2.40External closing pair is G 132-C 756
Stack -2.20External closing pair is A 133-T 755
Helix -6.70 4 base pairs.
Bulge loop 0.50External closing pair is C 134-G 754
Stack -2.10External closing pair is C 136-G 753
Stack -0.90External closing pair is A 137-T 752
Helix -3.00 3 base pairs.
Interior loop 1.00External closing pair is A 138-T 751
Stack -2.10External closing pair is C 140-G 749
Stack -0.90External closing pair is T 141-A 748
Stack -1.30External closing pair is T 142-A 747
Helix -4.30 4 base pairs.
Interior loop 6.00External closing pair is A 143-T 746
Stack -3.30External closing pair is G 155-C 741
Stack -2.40External closing pair is G 156-C 740
Stack -0.90External closing pair is A 157-T 739
Stack -2.10External closing pair is A 158-T 738
Stack -3.40External closing pair is G 159-C 737
Stack -2.10External closing pair is C 160-G 736
Stack -1.40External closing pair is T 161-G 735
Stack -3.30External closing pair is G 162-C 734
Helix -18.90 9 base pairs.
Interior loop 2.00External closing pair is G 163-C 733
Stack -2.40External closing pair is T 166-A 730
Stack -2.10External closing pair is C 167-G 729
Helix -4.50 3 base pairs.
Bulge loop 3.80External closing pair is T 168-A 728
Stack -2.40External closing pair is T 171-A 727
Stack -2.10External closing pair is C 172-G 726
Stack -0.60External closing pair is A 173-T 725
Stack -1.40External closing pair is G 174-T 724
Stack -1.30External closing pair is T 175-A 723
Helix -7.80 6 base pairs.
Interior loop 0.00External closing pair is A 176-T 722
Stack -2.10External closing pair is C 179-G 719
Helix -2.10 2 base pairs.
Multi-loop 2.70External closing pair is T 180-A 718
34 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 611-C 713
Stack -0.90External closing pair is T 612-A 712
Stack -2.10External closing pair is T 613-A 711
Helix -5.20 4 base pairs.
Multi-loop 2.10External closing pair is G 614-C 710
14 ss bases & 4 closing helices.
Stack -1.00External closing pair is T 681-A 707
Stack -2.50External closing pair is G 682-T 706
Stack -2.10External closing pair is C 683-G 705
Helix -5.60 4 base pairs.
Bulge loop 1.70External closing pair is A 684-T 704
Stack -3.40External closing pair is G 686-C 703
Stack -2.40External closing pair is C 687-G 702
Helix -5.80 3 base pairs.
Bulge loop 1.40External closing pair is G 688-C 701
Stack -1.10External closing pair is A 690-T 700
Helix -1.10 2 base pairs.
Hairpin loop 5.10Closing pair is T 691-A 699
Stack -2.40External closing pair is G 633-C 674
Stack -0.90External closing pair is A 634-T 673
Stack -0.90External closing pair is A 635-T 672
Helix -4.20 4 base pairs.
Interior loop 3.00External closing pair is A 636-T 671
Stack -1.40External closing pair is C 639-G 667
Stack -2.10External closing pair is G 640-T 666
Stack -2.40External closing pair is G 641-C 665
Helix -5.90 4 base pairs.
Bulge loop 3.80External closing pair is A 642-T 664
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is T 617-A 628
Stack -2.20External closing pair is G 618-C 627
Stack -1.30External closing pair is T 619-A 626
Helix -5.60 4 base pairs.
Hairpin loop 4.80Closing pair is T 620-G 625
Stack -1.30External closing pair is T 188-A 587
Stack -0.90External closing pair is A 189-T 586
Stack -2.10External closing pair is A 190-T 585
Stack -3.40External closing pair is G 191-C 584
Stack -2.10External closing pair is C 192-G 583
Helix -9.80 6 base pairs.
Bulge loop 4.10External closing pair is A 193-T 582
Stack -3.40External closing pair is G 198-C 581
Helix -3.40 2 base pairs.
Interior loop 2.50External closing pair is C 199-G 580
Stack -3.30External closing pair is G 201-C 577
Stack -2.40External closing pair is G 202-C 576
Stack -1.10External closing pair is A 203-T 575
Stack -2.10External closing pair is T 204-A 574
Stack -2.40External closing pair is G 205-C 573
Helix -11.30 6 base pairs.
Multi-loop 4.40External closing pair is A 206-T 572
3 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 539-T 570
Stack -0.90External closing pair is A 540-T 569
Stack -2.20External closing pair is A 541-T 568
Stack -1.40External closing pair is C 542-G 567
Stack -1.30External closing pair is G 543-T 566
Stack -0.60External closing pair is A 544-T 565
Helix -7.30 7 base pairs.
Bulge loop 1.30External closing pair is G 545-T 564
Stack -2.40External closing pair is C 546-G 562
Stack -2.40External closing pair is G 547-C 561
Stack -0.90External closing pair is A 548-T 560
Stack -1.40External closing pair is A 549-T 559
Stack -0.60External closing pair is T 550-G 558
Helix -7.70 6 base pairs.
Hairpin loop 5.50Closing pair is T 551-A 557
Stack -2.10External closing pair is T 209-A 538
Stack -2.20External closing pair is G 210-C 537
Stack -0.90External closing pair is T 211-A 536
Helix -5.20 4 base pairs.
Interior loop 1.10External closing pair is T 212-A 535
Stack -2.40External closing pair is G 214-C 533
Stack -0.90External closing pair is A 215-T 532
Stack -0.90External closing pair is A 216-T 531
Stack -0.90External closing pair is A 217-T 530
Helix -5.10 5 base pairs.
Interior loop 1.70External closing pair is A 218-T 529
Stack -2.10External closing pair is T 220-A 527
Stack -3.40External closing pair is G 221-C 526
Helix -5.50 3 base pairs.
Multi-loop 2.80External closing pair is C 222-G 525
18 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 506-A 524
Stack -1.30External closing pair is T 507-A 523
Stack -1.00External closing pair is T 508-G 522
Stack -2.20External closing pair is A 509-T 521
Stack -3.30External closing pair is C 510-G 520
Stack -1.40External closing pair is C 511-G 519
Helix -10.10 7 base pairs.
Hairpin loop 5.80Closing pair is G 512-T 518
Stack -1.00External closing pair is T 234-G 498
Stack -2.10External closing pair is A 235-T 497
Stack -3.30External closing pair is G 236-C 496
Stack -2.20External closing pair is G 237-C 495
Stack -2.40External closing pair is T 238-A 494
Stack -2.10External closing pair is C 239-G 493
Helix -13.10 7 base pairs.
Multi-loop 1.60External closing pair is T 240-G 492
20 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 261-C 474
Stack -0.90External closing pair is T 262-A 473
Helix -3.10 3 base pairs.
Interior loop 1.10External closing pair is T 263-A 472
Stack -2.10External closing pair is C 265-G 470
Stack -2.40External closing pair is T 266-A 469
Stack -2.10External closing pair is C 267-G 468
Stack -0.60External closing pair is A 268-T 467
Helix -7.20 5 base pairs.
Bulge loop 1.30External closing pair is G 269-T 466
Stack -2.10External closing pair is C 270-G 464
Stack -2.40External closing pair is T 271-A 463
Stack -2.10External closing pair is C 272-G 462
Stack -1.00External closing pair is T 273-G 461
Helix -7.60 5 base pairs.
Interior loop 2.90External closing pair is A 274-T 460
Stack -3.30External closing pair is C 281-G 452
Stack -2.40External closing pair is C 282-G 451
Helix -5.70 3 base pairs.
Multi-loop 2.50External closing pair is G 283-C 450
24 ss bases & 3 closing helices.
Stack -2.10External closing pair is A 422-T 444
Stack -2.40External closing pair is G 423-C 443
Stack -1.40External closing pair is A 424-T 442
Stack -1.00External closing pair is T 425-G 441
Stack -2.20External closing pair is A 426-T 440
Helix -9.10 6 base pairs.
Hairpin loop 5.60Closing pair is C 427-G 439
Stack -2.10External closing pair is C 299-G 417
Stack -1.30External closing pair is T 300-A 416
Stack -0.60External closing pair is T 301-G 415
Stack -0.90External closing pair is T 302-A 414
Stack -2.40External closing pair is T 303-A 413
Stack -2.10External closing pair is C 304-G 412
Stack -1.40External closing pair is A 305-T 411
Stack -0.60External closing pair is T 306-G 410
Helix -11.40 9 base pairs.
Interior loop 4.60External closing pair is T 307-A 409
Stack -1.00External closing pair is T 314-A 405
Helix -1.00 2 base pairs.
Interior loop 1.40External closing pair is G 315-T 404
Stack -1.30External closing pair is T 318-A 401
Stack -2.20External closing pair is A 319-T 400
Stack -3.30External closing pair is C 320-G 399
Helix -6.80 4 base pairs.
Multi-loop -0.20External closing pair is C 321-G 398
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 383-C 395
Stack -1.00External closing pair is T 384-A 394
Stack -1.40External closing pair is G 385-T 393
Helix -4.60 4 base pairs.
Hairpin loop 5.50Closing pair is T 386-A 392
Stack -2.20External closing pair is G 326-C 372
Stack -1.30External closing pair is T 327-A 371
Helix -3.50 3 base pairs.
Interior loop 1.70External closing pair is T 328-G 370
Stack -2.40External closing pair is T 330-A 368
Stack -2.10External closing pair is C 331-G 367
Stack -0.90External closing pair is A 332-T 366
Helix -5.40 4 base pairs.
Interior loop 3.40External closing pair is A 333-T 365
Stack -0.90External closing pair is A 337-T 361
Stack -2.10External closing pair is A 338-T 360
Stack -3.30External closing pair is G 339-C 359
Helix -6.30 4 base pairs.
Bulge loop 0.40External closing pair is G 340-C 358
Stack -2.10External closing pair is C 342-G 357
Stack -0.90External closing pair is A 343-T 356
Helix -3.00 3 base pairs.
Hairpin loop 5.40Closing pair is A 344-T 355
Stack -2.10External closing pair is C 242-G 258
Stack 0.30External closing pair is T 243-G 257
Stack -1.40External closing pair is G 244-T 256
Stack -2.10External closing pair is T 245-A 255
Stack -2.20External closing pair is G 246-C 254
Helix -7.50 6 base pairs.
Hairpin loop 5.60Closing pair is T 247-A 253

Structure 46
seq.txt
ΔG = -797.80

Structural elementδGInformation
External loop -1.20 25 ss bases & 2 closing helices.
Stack -2.10External closing pair is C 3114-G 3127
Stack -2.10External closing pair is T 3115-A 3126
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 3116-C 3125
Stack -3.30External closing pair is C 10-G 3108
Stack -3.30External closing pair is C 11-G 3107
Stack -2.10External closing pair is C 12-G 3106
Stack -0.90External closing pair is T 13-A 3105
Helix -9.60 5 base pairs.
Multi-loop 3.10External closing pair is T 14-A 3104
10 ss bases & 3 closing helices.
Stack -1.40External closing pair is A 29-T 3099
Stack -0.60External closing pair is T 30-G 3098
Stack -0.90External closing pair is T 31-A 3097
Stack -2.10External closing pair is T 32-A 3096
Stack -3.30External closing pair is G 33-C 3095
Stack -2.20External closing pair is G 34-C 3094
Helix -10.50 7 base pairs.
Multi-loop 1.90External closing pair is T 35-A 3093
14 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 2979-C 3091
Stack -2.10External closing pair is T 2980-A 3090
Helix -4.30 3 base pairs.
Bulge loop 0.50External closing pair is G 2981-C 3089
Stack -3.40External closing pair is G 2983-C 3088
Helix -3.40 2 base pairs.
Interior loop 1.20External closing pair is C 2984-G 3087
Stack -2.40External closing pair is T 2987-A 3083
Helix -2.40 2 base pairs.
Bulge loop 1.70External closing pair is C 2988-G 3082
Stack -0.90External closing pair is T 2989-A 3080
Stack -2.10External closing pair is T 2990-A 3079
Stack -3.30External closing pair is G 2991-C 3078
Stack -3.40External closing pair is G 2992-C 3077
Stack -2.10External closing pair is C 2993-G 3076
Helix -11.80 6 base pairs.
Multi-loop 0.40External closing pair is T 2994-A 3075
7 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 3062-C 3072
Helix -2.20 2 base pairs.
Hairpin loop 5.40Closing pair is T 3063-A 3071
Stack -2.20External closing pair is G 2996-C 3057
Stack -2.10External closing pair is T 2997-A 3056
Stack -2.40External closing pair is G 2998-C 3055
Helix -6.70 4 base pairs.
Bulge loop 3.70External closing pair is A 2999-T 3054
Stack -2.20External closing pair is G 3003-C 3053
Stack -2.40External closing pair is T 3004-A 3052
Helix -4.60 3 base pairs.
Interior loop 2.30External closing pair is C 3005-G 3051
Stack -2.10External closing pair is T 3008-A 3047
Helix -2.10 2 base pairs.
Bulge loop 0.50External closing pair is G 3009-C 3046
Stack -3.40External closing pair is G 3011-C 3045
Stack -2.10External closing pair is C 3012-G 3044
Helix -5.50 3 base pairs.
Bulge loop 5.40External closing pair is T 3013-A 3043
Stack -0.90External closing pair is T 3020-A 3042
Stack -2.10External closing pair is T 3021-A 3041
Helix -3.00 3 base pairs.
Bulge loop 1.60External closing pair is G 3022-C 3040
Stack -1.00External closing pair is T 3024-A 3039
Stack -2.50External closing pair is G 3025-T 3038
Stack -3.30External closing pair is C 3026-G 3037
Stack -1.40External closing pair is C 3027-G 3036
Stack -2.10External closing pair is G 3028-T 3035
Helix -10.30 6 base pairs.
Hairpin loop 4.60Closing pair is G 3029-C 3034
Stack -2.10External closing pair is A 38-T 2967
Stack -3.40External closing pair is G 39-C 2966
Helix -5.50 3 base pairs.
Interior loop 2.00External closing pair is C 40-G 2965
Stack -0.90External closing pair is T 44-A 2961
Stack -2.10External closing pair is T 45-A 2960
Stack -3.40External closing pair is G 46-C 2959
Stack -2.10External closing pair is C 47-G 2958
Stack -0.60External closing pair is T 48-G 2957
Helix -9.10 6 base pairs.
Bulge loop 1.70External closing pair is T 49-A 2956
Stack -3.40External closing pair is G 50-C 2954
Stack -2.10External closing pair is C 51-G 2953
Helix -5.50 3 base pairs.
Interior loop 3.80External closing pair is A 52-T 2952
Stack -2.10External closing pair is T 54-A 2949
Stack -3.40External closing pair is G 55-C 2948
Stack -2.10External closing pair is C 56-G 2947
Helix -7.60 4 base pairs.
Bulge loop 3.80External closing pair is T 57-A 2946
Stack -2.10External closing pair is A 58-T 2943
Stack -3.30External closing pair is G 59-C 2942
Stack -2.20External closing pair is G 60-C 2941
Stack -0.90External closing pair is T 61-A 2940
Stack -1.30External closing pair is T 62-A 2939
Stack -1.00External closing pair is T 63-G 2938
Stack -2.10External closing pair is A 64-T 2937
Stack -2.20External closing pair is G 65-C 2936
Stack -2.10External closing pair is T 66-A 2935
Helix -17.20 10 base pairs.
Multi-loop 2.50External closing pair is G 67-C 2934
12 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 2698-C 2932
Stack -2.20External closing pair is G 2699-C 2931
Stack -2.10External closing pair is T 2700-A 2930
Helix -7.60 4 base pairs.
Bulge loop 0.50External closing pair is G 2701-C 2929
Interior loop -0.20External closing pair is G 2702-C 2927
Stack -1.50External closing pair is T 2705-G 2924
Stack -2.10External closing pair is C 2706-G 2923
Helix -3.60 3 base pairs.
Multi-loop 0.60External closing pair is A 2707-T 2922
4 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2769-C 2920
Stack -0.90External closing pair is A 2770-T 2919
Stack -2.20External closing pair is A 2771-T 2918
Stack -2.40External closing pair is C 2772-G 2917
Stack -2.50External closing pair is G 2773-C 2916
Stack -1.50External closing pair is T 2774-G 2915
Stack -2.40External closing pair is C 2775-G 2914
Stack -2.40External closing pair is G 2776-C 2913
Helix -16.70 9 base pairs.
Multi-loop 3.80External closing pair is A 2777-T 2912
6 ss bases & 3 closing helices.
Stack -1.50External closing pair is G 2869-C 2911
Stack -0.50External closing pair is G 2870-T 2910
Stack -2.10External closing pair is G 2871-T 2909
Stack -1.50External closing pair is G 2872-C 2908
Stack -1.40External closing pair is G 2873-T 2907
Helix -7.00 6 base pairs.
Interior loop 0.90External closing pair is T 2874-A 2906
Stack -2.50External closing pair is G 2878-C 2902
Helix -2.50 2 base pairs.
Interior loop 3.20External closing pair is T 2879-G 2901
Stack -2.10External closing pair is T 2882-A 2899
Stack -3.30External closing pair is G 2883-C 2898
Helix -5.40 3 base pairs.
Interior loop -0.10External closing pair is G 2884-C 2897
Stack -3.40External closing pair is G 2886-C 2895
Stack -3.30External closing pair is C 2887-G 2894
Helix -6.70 3 base pairs.
Hairpin loop 3.80Closing pair is C 2888-G 2893
Stack -3.30External closing pair is C 2783-G 2867
Stack -2.10External closing pair is C 2784-G 2866
Stack -0.90External closing pair is A 2785-T 2865
Helix -6.30 4 base pairs.
Interior loop 1.70External closing pair is A 2786-T 2864
Stack -1.40External closing pair is T 2788-G 2862
Stack -2.20External closing pair is G 2789-C 2861
Stack -1.30External closing pair is T 2790-A 2860
Stack -1.40External closing pair is A 2791-T 2859
Helix -6.30 5 base pairs.
Bulge loop 2.80External closing pair is T 2792-G 2858
Stack -0.90External closing pair is A 2793-T 2856
Stack -2.20External closing pair is A 2794-T 2855
Stack -2.10External closing pair is C 2795-G 2854
Stack -0.90External closing pair is T 2796-A 2853
Helix -6.10 5 base pairs.
Interior loop -2.90External closing pair is T 2797-A 2852
Stack -1.10External closing pair is A 2800-T 2849
Helix -1.10 2 base pairs.
Bulge loop 1.70External closing pair is T 2801-A 2848
Stack -2.40External closing pair is G 2802-C 2846
Helix -2.40 2 base pairs.
Interior loop 1.10External closing pair is A 2803-T 2845
Stack -3.30External closing pair is G 2805-C 2843
Helix -3.30 2 base pairs.
Interior loop 2.00External closing pair is G 2806-C 2842
Stack -1.30External closing pair is G 2812-T 2835
Stack -1.40External closing pair is A 2813-T 2834
Stack 0.30External closing pair is T 2814-G 2833
Stack -2.10External closing pair is G 2815-T 2832
Helix -4.50 5 base pairs.
Interior loop -0.30External closing pair is G 2816-C 2831
Stack -2.40External closing pair is G 2818-C 2829
Stack -1.10External closing pair is A 2819-T 2828
Stack -1.30External closing pair is T 2820-A 2827
Helix -4.80 4 base pairs.
Hairpin loop 5.00Closing pair is T 2821-G 2826
Stack -3.40External closing pair is G 2710-C 2767
Stack -2.40External closing pair is C 2711-G 2766
Stack -3.40External closing pair is G 2712-C 2765
Stack -2.10External closing pair is C 2713-G 2764
Helix -11.30 5 base pairs.
Multi-loop 2.50External closing pair is A 2714-T 2763
9 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 2741-A 2759
Stack -2.10External closing pair is C 2742-G 2758
Stack -0.90External closing pair is T 2743-A 2757
Stack -2.10External closing pair is T 2744-A 2756
Stack -3.30External closing pair is G 2745-C 2755
Stack -3.40External closing pair is G 2746-C 2754
Helix -14.20 7 base pairs.
Hairpin loop 4.20Closing pair is C 2747-G 2753
Stack -3.40External closing pair is G 2716-C 2735
Stack -2.10External closing pair is C 2717-G 2734
Stack -2.10External closing pair is A 2718-T 2733
Helix -7.60 4 base pairs.
Hairpin loop 5.60Closing pair is G 2719-C 2732
Stack -2.10External closing pair is C 77-G 2695
Helix -2.10 2 base pairs.
Bulge loop 2.90External closing pair is A 78-T 2694
Stack -1.10External closing pair is A 79-T 2692
Stack -2.40External closing pair is T 80-A 2691
Stack -3.30External closing pair is C 81-G 2690
Stack -2.10External closing pair is C 82-G 2689
Helix -8.90 5 base pairs.
Bulge loop 1.70External closing pair is A 83-T 2688
Stack -2.50External closing pair is G 85-C 2687
Stack -1.50External closing pair is T 86-G 2686
Stack -2.10External closing pair is C 87-G 2685
Stack -1.10External closing pair is A 88-T 2684
Stack -0.90External closing pair is T 89-A 2683
Stack -2.10External closing pair is T 90-A 2682
Stack -2.50External closing pair is G 91-C 2681
Helix -12.70 8 base pairs.
Multi-loop 4.50External closing pair is T 92-G 2680
29 ss bases & 4 closing helices.
Stack -1.10External closing pair is A 2658-T 2677
Stack -2.40External closing pair is T 2659-A 2676
Stack -3.30External closing pair is C 2660-G 2675
Stack -2.10External closing pair is C 2661-G 2674
Stack -0.90External closing pair is A 2662-T 2673
Helix -9.80 6 base pairs.
Hairpin loop 5.40Closing pair is A 2663-T 2672
Stack -0.60External closing pair is A 190-T 2646
Stack -2.50External closing pair is G 191-T 2645
Helix -3.10 3 base pairs.
Bulge loop 1.70External closing pair is C 192-G 2644
Stack -1.30External closing pair is T 194-A 2643
Stack -0.90External closing pair is A 195-T 2642
Stack -0.90External closing pair is A 196-T 2641
Stack -2.10External closing pair is A 197-T 2640
Helix -5.20 5 base pairs.
Bulge loop 0.40External closing pair is G 198-C 2639
Stack -2.40External closing pair is C 200-G 2638
Stack -3.30External closing pair is G 201-C 2637
Stack -2.40External closing pair is G 202-C 2636
Helix -8.10 4 base pairs.
Interior loop 1.60External closing pair is A 203-T 2635
Stack -1.40External closing pair is G 207-T 2631
Stack -1.30External closing pair is T 208-A 2630
Stack -1.40External closing pair is T 209-G 2629
Stack -2.50External closing pair is G 210-C 2628
Stack -0.60External closing pair is T 211-G 2627
Stack -1.30External closing pair is T 212-A 2626
Helix -8.50 7 base pairs.
Interior loop 2.90External closing pair is T 213-G 2625
Stack -2.50External closing pair is G 221-T 2618
Stack -2.10External closing pair is C 222-G 2617
Stack -2.20External closing pair is A 223-T 2616
Helix -6.80 4 base pairs.
Multi-loop 0.40External closing pair is C 224-G 2615
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 809-A 2611
Stack -1.00External closing pair is T 810-A 2610
Stack -2.50External closing pair is G 811-T 2609
Stack -2.40External closing pair is C 812-G 2608
Stack -1.50External closing pair is G 813-C 2607
Stack -2.50External closing pair is G 814-T 2606
Stack -2.10External closing pair is C 815-G 2605
Stack -1.10External closing pair is A 816-T 2604
Stack -1.30External closing pair is T 817-A 2603
Helix -15.30 10 base pairs.
Interior loop 0.10External closing pair is T 818-G 2602
Multi-loop 2.90External closing pair is C 821-G 2599
9 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 2138-A 2593
Stack -2.10External closing pair is A 2139-T 2592
Stack -2.20External closing pair is G 2140-C 2591
Stack -1.00External closing pair is T 2141-A 2590
Stack -2.10External closing pair is G 2142-T 2589
Stack -3.40External closing pair is G 2143-C 2588
Stack -2.10External closing pair is C 2144-G 2587
Stack -0.90External closing pair is T 2145-A 2586
Stack -2.40External closing pair is T 2146-A 2585
Stack -2.10External closing pair is C 2147-G 2584
Stack -2.10External closing pair is A 2148-T 2583
Stack -3.40External closing pair is G 2149-C 2582
Stack -2.10External closing pair is C 2150-G 2581
Stack -1.30External closing pair is T 2151-A 2580
Stack -1.40External closing pair is A 2152-T 2579
Stack -1.40External closing pair is T 2153-G 2578
Helix -31.30 17 base pairs.
Bulge loop 0.40External closing pair is G 2154-C 2577
Multi-loop 0.90External closing pair is C 2155-G 2575
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is T 2198-G 2573
Stack -0.90External closing pair is T 2199-A 2572
Stack -0.90External closing pair is T 2200-A 2571
Helix -2.40 4 base pairs.
Interior loop 1.70External closing pair is T 2201-A 2570
Stack -2.20External closing pair is A 2203-T 2568
Stack -3.30External closing pair is C 2204-G 2567
Stack -2.10External closing pair is C 2205-G 2566
Helix -7.60 4 base pairs.
Multi-loop 2.80External closing pair is A 2206-T 2565
16 ss bases & 3 closing helices.
Stack -2.40External closing pair is G 2255-C 2563
Stack -1.40External closing pair is A 2256-T 2562
Stack -1.50External closing pair is T 2257-G 2561
Stack -2.10External closing pair is C 2258-G 2560
Helix -7.40 5 base pairs.
Multi-loop 2.30External closing pair is T 2259-A 2559
2 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 2543-G 2557
Stack -0.90External closing pair is A 2544-T 2556
Stack -1.10External closing pair is A 2545-T 2555
Stack -2.40External closing pair is T 2546-A 2554
Helix -6.50 5 base pairs.
Hairpin loop 4.20Closing pair is C 2547-G 2553
Stack -3.30External closing pair is G 2260-C 2541
Stack -2.50External closing pair is G 2261-C 2540
Helix -5.80 3 base pairs.
Multi-loop 2.80External closing pair is T 2262-G 2539
11 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 2381-A 2534
Stack -1.30External closing pair is T 2382-A 2533
Stack -0.60External closing pair is T 2383-G 2532
Stack -0.90External closing pair is T 2384-A 2531
Stack -1.30External closing pair is T 2385-A 2530
Stack -1.10External closing pair is A 2386-T 2529
Helix -6.10 7 base pairs.
Interior loop -0.40External closing pair is T 2387-A 2528
Stack -2.10External closing pair is A 2389-T 2526
Helix -2.10 2 base pairs.
Multi-loop 1.60External closing pair is G 2390-C 2525
21 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 2477-T 2520
Stack -1.00External closing pair is T 2478-A 2519
Stack -2.10External closing pair is G 2479-T 2518
Stack -2.20External closing pair is G 2480-C 2517
Stack -0.90External closing pair is T 2481-A 2516
Stack -1.00External closing pair is T 2482-A 2515
Helix -8.30 7 base pairs.
Interior loop 2.60External closing pair is G 2483-T 2514
Stack -2.10External closing pair is A 2487-T 2511
Stack -2.40External closing pair is G 2488-C 2510
Stack -1.10External closing pair is A 2489-T 2509
Stack -1.30External closing pair is T 2490-A 2508
Stack -1.40External closing pair is A 2491-T 2507
Stack -1.40External closing pair is T 2492-G 2506
Stack -3.30External closing pair is G 2493-C 2505
Stack -2.40External closing pair is G 2494-C 2504
Helix -15.40 9 base pairs.
Hairpin loop 5.40Closing pair is A 2495-T 2503
Stack -2.10External closing pair is C 2402-G 2470
Stack -1.30External closing pair is T 2403-A 2469
Stack -2.20External closing pair is A 2404-T 2468
Stack -3.30External closing pair is C 2405-G 2467
Stack -1.40External closing pair is C 2406-G 2466
Helix -10.30 6 base pairs.
Interior loop 1.80External closing pair is G 2407-T 2465
Stack -2.10External closing pair is C 2414-G 2457
Stack -0.90External closing pair is A 2415-T 2456
Helix -3.00 3 base pairs.
Interior loop 1.10External closing pair is A 2416-T 2455
Stack -1.50External closing pair is G 2418-C 2453
Stack -2.10External closing pair is G 2419-T 2452
Stack -2.20External closing pair is G 2420-C 2451
Stack -1.30External closing pair is T 2421-A 2450
Stack -1.10External closing pair is A 2422-T 2449
Helix -8.20 6 base pairs.
Interior loop 3.90External closing pair is T 2423-A 2448
Stack -2.40External closing pair is G 2430-C 2445
Stack -1.40External closing pair is A 2431-T 2444
Stack -1.00External closing pair is T 2432-G 2443
Stack -1.40External closing pair is A 2433-T 2442
Stack -1.50External closing pair is T 2434-G 2441
Helix -7.70 6 base pairs.
Hairpin loop 0.40Closing pair is C 2435-G 2440
Stack -3.40External closing pair is G 2263-C 2373
Stack -3.30External closing pair is C 2264-G 2372
Stack -2.10External closing pair is C 2265-G 2371
Stack -2.10External closing pair is T 2266-A 2370
Stack -3.40External closing pair is G 2267-C 2369
Helix -14.30 6 base pairs.
Interior loop 1.10External closing pair is C 2268-G 2368
Stack -2.10External closing pair is A 2270-T 2366
Stack -2.40External closing pair is G 2271-C 2365
Stack -1.40External closing pair is A 2272-T 2364
Stack -1.00External closing pair is T 2273-G 2363
Helix -6.90 5 base pairs.
Bulge loop 1.70External closing pair is A 2274-T 2362
Stack -3.30External closing pair is G 2276-C 2361
Stack -2.20External closing pair is G 2277-C 2360
Stack -0.90External closing pair is T 2278-A 2359
Helix -6.40 4 base pairs.
Multi-loop 2.60External closing pair is T 2279-A 2358
34 ss bases & 4 closing helices.
Stack -0.90External closing pair is T 2336-A 2349
Stack -2.10External closing pair is T 2337-A 2348
Stack -3.40External closing pair is G 2338-C 2347
Stack -2.10External closing pair is C 2339-G 2346
Helix -8.50 5 base pairs.
Hairpin loop 5.40Closing pair is A 2340-T 2345
Stack -0.90External closing pair is A 2304-T 2323
Stack -1.10External closing pair is A 2305-T 2322
Stack -0.90External closing pair is T 2306-A 2321
Stack -1.30External closing pair is T 2307-A 2320
Stack -0.90External closing pair is A 2308-T 2319
Stack -0.90External closing pair is A 2309-T 2318
Stack -0.90External closing pair is A 2310-T 2317
Helix -6.90 8 base pairs.
Hairpin loop 5.10Closing pair is A 2311-T 2316
Stack -2.10External closing pair is C 2283-G 2292
Stack -2.40External closing pair is T 2284-A 2291
Helix -4.50 3 base pairs.
Hairpin loop 0.40Closing pair is C 2285-G 2290
Stack -0.60External closing pair is A 2208-T 2240
Stack -1.30External closing pair is G 2209-T 2239
Stack -1.40External closing pair is A 2210-T 2238
Stack -1.40External closing pair is T 2211-G 2237
Stack -1.50External closing pair is G 2212-C 2236
Helix -6.20 6 base pairs.
Bulge loop 2.50External closing pair is G 2213-T 2235
Stack -1.40External closing pair is A 2215-T 2234
Stack -1.40External closing pair is T 2216-G 2233
Stack -2.40External closing pair is G 2217-C 2232
Stack -2.20External closing pair is A 2218-T 2231
Stack -2.10External closing pair is C 2219-G 2230
Helix -9.50 6 base pairs.
Hairpin loop 5.30Closing pair is T 2220-A 2229
Stack -2.20External closing pair is G 2159-C 2192
Stack -0.90External closing pair is T 2160-A 2191
Stack -2.10External closing pair is T 2161-A 2190
Stack -3.40External closing pair is G 2162-C 2189
Stack -2.10External closing pair is C 2163-G 2188
Helix -10.70 6 base pairs.
Interior loop 0.50External closing pair is A 2164-T 2187
Stack -2.50External closing pair is G 2167-T 2184
Stack -3.30External closing pair is C 2168-G 2183
Stack -2.10External closing pair is C 2169-G 2182
Stack -1.40External closing pair is A 2170-T 2181
Stack -1.50External closing pair is T 2171-G 2180
Stack -2.10External closing pair is C 2172-G 2179
Helix -12.90 7 base pairs.
Hairpin loop 5.10Closing pair is A 2173-T 2178
Stack -2.20External closing pair is A 825-T 2136
Stack -2.10External closing pair is C 826-G 2135
Stack -0.90External closing pair is A 827-T 2134
Helix -5.20 4 base pairs.
Interior loop 1.50External closing pair is A 828-T 2133
Stack -0.90External closing pair is T 832-A 2130
Stack -2.40External closing pair is T 833-A 2129
Stack -3.30External closing pair is C 834-G 2128
Helix -6.60 4 base pairs.
Multi-loop 1.70External closing pair is C 835-G 2127
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2054-A 2121
Stack -3.40External closing pair is G 2055-C 2120
Stack -3.30External closing pair is C 2056-G 2119
Stack -2.10External closing pair is C 2057-G 2118
Helix -10.90 5 base pairs.
Multi-loop 4.30External closing pair is A 2058-T 2117
19 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 2076-A 2100
Helix -2.10 2 base pairs.
Interior loop 1.10External closing pair is G 2077-C 2099
Stack -2.40External closing pair is T 2079-A 2097
Stack -3.30External closing pair is C 2080-G 2096
Stack -2.10External closing pair is C 2081-G 2095
Stack -1.10External closing pair is A 2082-T 2094
Stack -1.30External closing pair is T 2083-A 2093
Stack -1.00External closing pair is T 2084-G 2092
Stack -0.90External closing pair is A 2085-T 2091
Helix -12.10 8 base pairs.
Hairpin loop 6.20Closing pair is A 2086-T 2090
Stack -1.40External closing pair is A 2059-T 2072
Stack -1.00External closing pair is T 2060-G 2071
Stack -2.20External closing pair is A 2061-T 2070
Stack -3.30External closing pair is C 2062-G 2069
Helix -7.90 5 base pairs.
Hairpin loop 3.80Closing pair is C 2063-G 2068
Stack -1.30External closing pair is T 843-A 2051
Stack -2.10External closing pair is A 844-T 2050
Stack -2.50External closing pair is G 845-C 2049
Helix -5.90 4 base pairs.
Interior loop 1.90External closing pair is T 846-G 2048
Stack -2.10External closing pair is T 849-A 2044
Stack -2.40External closing pair is G 850-C 2043
Stack -2.20External closing pair is A 851-T 2042
Stack -2.10External closing pair is C 852-G 2041
Helix -8.80 5 base pairs.
Interior loop 4.60External closing pair is A 853-T 2040
Stack -2.20External closing pair is A 862-T 2034
Stack -1.40External closing pair is C 863-G 2033
Stack -2.10External closing pair is G 864-T 2032
Stack -2.50External closing pair is G 865-C 2031
Stack -1.00External closing pair is T 866-G 2030
Stack -0.90External closing pair is A 867-T 2029
Stack -2.10External closing pair is A 868-T 2028
Stack -3.40External closing pair is G 869-C 2027
Helix -15.60 9 base pairs.
Multi-loop 2.40External closing pair is C 870-G 2026
15 ss bases & 3 closing helices.
Stack -1.30External closing pair is T 1993-A 2025
Stack -1.50External closing pair is T 1994-G 2024
Stack -2.10External closing pair is C 1995-G 2023
Stack -0.60External closing pair is A 1996-T 2022
Stack -1.30External closing pair is G 1997-T 2021
Stack -0.90External closing pair is A 1998-T 2020
Stack -0.90External closing pair is A 1999-T 2019
Stack -1.40External closing pair is A 2000-T 2018
Helix -10.00 9 base pairs.
Interior loop 4.00External closing pair is T 2001-G 2017
Stack -1.40External closing pair is T 2004-G 2015
Stack -2.40External closing pair is G 2005-C 2014
Stack -1.10External closing pair is A 2006-T 2013
Helix -4.90 4 base pairs.
Hairpin loop 5.10Closing pair is T 2007-A 2012
Stack -3.30External closing pair is G 885-C 1991
Stack -3.40External closing pair is G 886-C 1990
Helix -6.70 3 base pairs.
Interior loop 1.20External closing pair is C 887-G 1989
Stack -0.90External closing pair is T 892-A 1984
Stack -0.90External closing pair is T 893-A 1983
Stack -2.40External closing pair is T 894-A 1982
Helix -4.20 4 base pairs.
Multi-loop 0.40External closing pair is C 895-G 1981
17 ss bases & 3 closing helices.
Stack -0.90External closing pair is T 1954-A 1969
Stack -2.10External closing pair is T 1955-A 1968
Stack -3.30External closing pair is G 1956-C 1967
Stack -3.40External closing pair is G 1957-C 1966
Helix -9.70 5 base pairs.
Hairpin loop 4.00Closing pair is C 1958-G 1965
Stack -2.40External closing pair is G 898-C 1949
Stack -0.90External closing pair is A 899-T 1948
Stack -0.60External closing pair is A 900-T 1947
Stack -2.10External closing pair is G 901-T 1946
Stack -2.20External closing pair is G 902-C 1945
Stack -2.10External closing pair is T 903-A 1944
Stack -3.40External closing pair is G 904-C 1943
Stack -3.30External closing pair is C 905-G 1942
Stack -2.10External closing pair is C 906-G 1941
Helix -19.10 10 base pairs.
Interior loop 4.20External closing pair is T 907-A 1940
Stack -2.40External closing pair is T 914-A 1936
Stack -3.30External closing pair is C 915-G 1935
Helix -5.70 3 base pairs.
Interior loop 1.40External closing pair is C 916-G 1934
Stack -1.30External closing pair is G 919-T 1932
Stack -2.20External closing pair is A 920-T 1931
Stack -2.10External closing pair is C 921-G 1930
Stack -1.30External closing pair is T 922-A 1929
Helix -6.90 5 base pairs.
Multi-loop 4.70External closing pair is A 923-T 1928
9 ss bases & 3 closing helices.
Stack -0.60External closing pair is A 967-T 1927
Stack -1.30External closing pair is G 968-T 1926
Stack -2.20External closing pair is A 969-T 1925
Helix -4.10 4 base pairs.
Multi-loop 0.60External closing pair is C 970-G 1924
6 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1225-C 1922
Stack -2.10External closing pair is C 1226-G 1921
Stack -1.40External closing pair is A 1227-T 1920
Helix -6.90 4 base pairs.
Interior loop 1.70External closing pair is T 1228-G 1919
Stack -2.10External closing pair is A 1230-T 1917
Stack -2.20External closing pair is G 1231-C 1916
Stack -0.90External closing pair is T 1232-A 1915
Helix -5.20 4 base pairs.
Multi-loop 2.50External closing pair is T 1233-A 1914
7 ss bases & 3 closing helices.
Stack -3.30External closing pair is C 1257-G 1909
Stack -2.10External closing pair is C 1258-G 1908
Stack -1.30External closing pair is T 1259-A 1907
Stack -0.60External closing pair is T 1260-G 1906
Stack -1.30External closing pair is T 1261-A 1905
Helix -8.60 6 base pairs.
Interior loop 1.90External closing pair is A 1262-T 1904
Stack -0.90External closing pair is T 1265-A 1900
Stack -0.90External closing pair is T 1266-A 1899
Stack -0.90External closing pair is T 1267-A 1898
Stack -2.40External closing pair is T 1268-A 1897
Helix -5.10 5 base pairs.
Multi-loop -1.20External closing pair is C 1269-G 1896
24 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1870-C 1880
Stack -2.50External closing pair is G 1871-C 1879
Helix -5.80 3 base pairs.
Hairpin loop 5.10Closing pair is T 1872-G 1878
Stack -2.40External closing pair is G 1273-C 1863
Stack -1.40External closing pair is A 1274-T 1862
Stack -1.00External closing pair is T 1275-G 1861
Stack -0.90External closing pair is A 1276-T 1860
Stack -2.10External closing pair is A 1277-T 1859
Helix -7.80 6 base pairs.
Multi-loop 0.10External closing pair is G 1278-C 1858
31 ss bases & 4 closing helices.
Stack -2.40External closing pair is G 1690-C 1853
Stack -0.90External closing pair is A 1691-T 1852
Stack -0.90External closing pair is A 1692-T 1851
Stack -2.20External closing pair is A 1693-T 1850
Helix -6.40 5 base pairs.
Interior loop -1.60External closing pair is C 1694-G 1849
Stack -2.10External closing pair is C 1697-G 1846
Stack -2.10External closing pair is A 1698-T 1845
Stack -2.20External closing pair is G 1699-C 1844
Stack -1.00External closing pair is T 1700-A 1843
Helix -7.40 5 base pairs.
Multi-loop 3.40External closing pair is G 1701-T 1842
23 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 1751-A 1820
Stack -2.10External closing pair is C 1752-G 1819
Helix -4.50 3 base pairs.
Interior loop 2.30External closing pair is T 1753-A 1818
Stack -2.10External closing pair is C 1757-G 1813
Helix -2.10 2 base pairs.
Interior loop 1.70External closing pair is T 1758-G 1812
Stack -1.00External closing pair is T 1760-A 1810
Stack -1.30External closing pair is G 1761-T 1809
Stack -2.10External closing pair is A 1762-T 1808
Stack -2.20External closing pair is G 1763-C 1807
Stack -0.90External closing pair is T 1764-A 1806
Stack -2.40External closing pair is T 1765-A 1805
Stack -3.30External closing pair is C 1766-G 1804
Helix -13.20 8 base pairs.
Interior loop 6.70External closing pair is C 1767-G 1803
Stack -2.10External closing pair is A 1769-T 1788
Stack -3.30External closing pair is G 1770-C 1787
Stack -2.40External closing pair is G 1771-C 1786
Stack -2.20External closing pair is A 1772-T 1785
Stack -2.40External closing pair is C 1773-G 1784
Helix -12.40 6 base pairs.
Hairpin loop 4.10Closing pair is G 1774-C 1783
Stack -2.40External closing pair is C 1704-G 1750
Stack -3.40External closing pair is G 1705-C 1749
Stack -1.40External closing pair is C 1706-G 1748
Helix -7.20 4 base pairs.
Multi-loop 3.10External closing pair is G 1707-T 1747
11 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1724-G 1737
Stack -2.10External closing pair is T 1725-A 1736
Helix -4.20 3 base pairs.
Hairpin loop 4.10Closing pair is G 1726-C 1735
Stack -2.10External closing pair is A 1710-T 1723
Stack -2.40External closing pair is G 1711-C 1722
Stack -1.10External closing pair is A 1712-T 1721
Stack -1.30External closing pair is T 1713-A 1720
Helix -6.90 5 base pairs.
Hairpin loop 4.50Closing pair is A 1714-T 1719
Stack -3.40External closing pair is G 1675-C 1686
Stack -2.10External closing pair is C 1676-G 1685
Helix -5.50 3 base pairs.
Hairpin loop 4.60Closing pair is T 1677-G 1684
Stack -3.30External closing pair is G 1302-C 1673
Stack -2.50External closing pair is G 1303-C 1672
Stack -1.00External closing pair is T 1304-G 1671
Stack -1.10External closing pair is A 1305-T 1670
Stack -1.30External closing pair is T 1306-A 1669
Stack -1.40External closing pair is A 1307-T 1668
Stack -0.60External closing pair is T 1308-G 1667
Stack -0.90External closing pair is T 1309-A 1666
Stack -1.30External closing pair is T 1310-A 1665
Stack -1.40External closing pair is T 1311-G 1664
Stack -2.40External closing pair is G 1312-C 1663
Helix -17.20 12 base pairs.
Interior loop 4.10External closing pair is A 1313-T 1662
Stack -2.40External closing pair is T 1315-A 1658
Stack -2.10External closing pair is C 1316-G 1657
Helix -4.50 3 base pairs.
Interior loop 3.70External closing pair is T 1317-A 1656
Stack -0.90External closing pair is A 1320-T 1652
Stack -1.40External closing pair is A 1321-T 1651
Stack -0.60External closing pair is T 1322-G 1650
Stack -1.30External closing pair is T 1323-A 1649
Stack -1.00External closing pair is T 1324-G 1648
Helix -5.20 6 base pairs.
Interior loop 1.70External closing pair is A 1325-T 1647
Stack -2.40External closing pair is T 1327-A 1645
Stack -2.40External closing pair is C 1328-G 1644
Stack -2.20External closing pair is G 1329-C 1643
Stack -0.90External closing pair is T 1330-A 1642
Helix -7.90 5 base pairs.
Interior loop 1.10External closing pair is T 1331-A 1641
Stack -3.30External closing pair is C 1333-G 1639
Helix -3.30 2 base pairs.
Multi-loop 1.50External closing pair is C 1334-G 1638
34 ss bases & 3 closing helices.
Stack -2.10External closing pair is T 1557-A 1631
Stack -3.40External closing pair is G 1558-C 1630
Stack -2.10External closing pair is C 1559-G 1629
Stack -2.10External closing pair is T 1560-A 1628
Helix -9.70 5 base pairs.
Multi-loop 1.70External closing pair is G 1561-C 1627
28 ss bases & 3 closing helices.
Stack -0.90External closing pair is A 1603-T 1623
Stack -1.40External closing pair is A 1604-T 1622
Stack -1.00External closing pair is T 1605-G 1621
Stack -0.90External closing pair is A 1606-T 1620
Stack -2.10External closing pair is A 1607-T 1619
Stack -2.40External closing pair is G 1608-C 1618
Stack -1.10External closing pair is A 1609-T 1617
Stack -2.40External closing pair is T 1610-A 1616
Helix -12.20 9 base pairs.
Hairpin loop 5.70Closing pair is C 1611-G 1615
Stack -3.30External closing pair is G 1576-C 1591
Stack -2.40External closing pair is G 1577-C 1590
Helix -5.70 3 base pairs.
Hairpin loop 5.40Closing pair is A 1578-T 1589
Stack -2.10External closing pair is A 1353-T 1546
Stack -2.40External closing pair is G 1354-C 1545
Stack -1.40External closing pair is A 1355-T 1544
Stack -1.00External closing pair is T 1356-G 1543
Stack -1.10External closing pair is A 1357-T 1542
Stack -0.90External closing pair is T 1358-A 1541
Stack -2.10External closing pair is T 1359-A 1540
Stack -1.50External closing pair is G 1360-C 1539
Helix -12.50 9 base pairs.
Multi-loop 2.10External closing pair is G 1361-T 1538
17 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1521-A 1531
Stack -2.50External closing pair is G 1522-T 1530
Helix -3.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 1523-G 1529
Stack -3.40External closing pair is G 1370-C 1517
Stack -2.10External closing pair is C 1371-G 1516
Stack -0.90External closing pair is A 1372-T 1515
Helix -6.40 4 base pairs.
Interior loop 3.70External closing pair is A 1373-T 1514
Stack -0.90External closing pair is A 1376-T 1509
Stack -2.10External closing pair is A 1377-T 1508
Stack -2.20External closing pair is G 1378-C 1507
Stack -1.00External closing pair is T 1379-A 1506
Stack -1.30External closing pair is G 1380-T 1505
Stack -1.40External closing pair is A 1381-T 1504
Helix -8.90 7 base pairs.
Multi-loop 2.80External closing pair is T 1382-G 1503
17 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 1416-C 1500
Stack -2.10External closing pair is C 1417-G 1499
Stack -2.10External closing pair is T 1418-A 1498
Stack -2.40External closing pair is G 1419-C 1497
Helix -10.00 5 base pairs.
Multi-loop 3.40External closing pair is A 1420-T 1496
25 ss bases & 3 closing helices.
Stack -1.10External closing pair is A 1459-T 1492
Stack -0.90External closing pair is T 1460-A 1491
Stack -2.10External closing pair is T 1461-A 1490
Helix -4.10 4 base pairs.
Interior loop 1.10External closing pair is G 1462-C 1489
Stack -1.30External closing pair is T 1464-A 1487
Stack -1.50External closing pair is T 1465-G 1486
Stack -3.30External closing pair is C 1466-G 1485
Stack -2.40External closing pair is C 1467-G 1484
Helix -8.50 5 base pairs.
Interior loop 2.00External closing pair is G 1468-C 1483
Stack -1.30External closing pair is T 1470-A 1480
Stack -2.10External closing pair is A 1471-T 1479
Stack -3.40External closing pair is G 1472-C 1478
Helix -6.80 4 base pairs.
Hairpin loop 5.70Closing pair is C 1473-G 1477
Stack -2.10External closing pair is C 1432-G 1447
Stack -2.10External closing pair is A 1433-T 1446
Stack -2.40External closing pair is G 1434-C 1445
Helix -6.60 4 base pairs.
Hairpin loop 4.50Closing pair is A 1435-T 1444
Stack -1.40External closing pair is G 1390-T 1407
Stack -1.00External closing pair is T 1391-A 1406
Stack -1.40External closing pair is G 1392-T 1405
Stack -0.90External closing pair is T 1393-A 1404
Stack -2.10External closing pair is T 1394-A 1403
Stack -3.40External closing pair is G 1395-C 1402
Helix -10.20 7 base pairs.
Hairpin loop 4.60Closing pair is C 1396-G 1401
Stack -2.10External closing pair is T 1236-A 1255
Stack -1.50External closing pair is G 1237-C 1254
Stack -1.40External closing pair is G 1238-T 1253
Stack -2.40External closing pair is T 1239-A 1252
Helix -7.40 5 base pairs.
Hairpin loop 4.50Closing pair is C 1240-G 1251
Stack -0.90External closing pair is T 974-A 1222
Stack -2.40External closing pair is T 975-A 1221
Stack -3.30External closing pair is C 976-G 1220
Stack -3.30External closing pair is C 977-G 1219
Stack -1.40External closing pair is C 978-G 1218
Stack -2.10External closing pair is G 979-T 1217
Stack -2.40External closing pair is G 980-C 1216
Helix -15.80 8 base pairs.
Interior loop 4.70External closing pair is A 981-T 1215
Stack -1.00External closing pair is T 983-A 1210
Stack -2.10External closing pair is G 984-T 1209
Stack -2.50External closing pair is G 985-C 1208
Stack -1.50External closing pair is T 986-G 1207
Stack -2.10External closing pair is C 987-G 1206
Helix -9.20 6 base pairs.
Multi-loop 3.00External closing pair is A 988-T 1205
14 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 1176-G 1196
Stack -2.40External closing pair is T 1177-A 1195
Stack -2.10External closing pair is C 1178-G 1194
Stack -0.60External closing pair is A 1179-T 1193
Stack -1.30External closing pair is G 1180-T 1192
Stack -0.90External closing pair is A 1181-T 1191
Helix -9.40 7 base pairs.
Hairpin loop 5.70Closing pair is A 1182-T 1190
Stack -2.50External closing pair is G 995-C 1175
Stack -1.00External closing pair is T 996-G 1174
Helix -3.50 3 base pairs.
Bulge loop 2.70External closing pair is A 997-T 1173
Stack -0.90External closing pair is T 998-A 1171
Stack -0.90External closing pair is T 999-A 1170
Helix -1.80 3 base pairs.
Interior loop -2.50External closing pair is T 1000-A 1169
Stack -2.40External closing pair is T 1003-A 1166
Stack -2.10External closing pair is C 1004-G 1165
Helix -4.50 3 base pairs.
Multi-loop 2.60External closing pair is T 1005-G 1164
21 ss bases & 3 closing helices.
Stack -1.00External closing pair is T 1034-A 1153
Stack -1.40External closing pair is G 1035-T 1152
Stack -2.40External closing pair is T 1036-A 1151
Stack -2.10External closing pair is C 1037-G 1150
Stack -2.10External closing pair is T 1038-A 1149
Stack -3.40External closing pair is G 1039-C 1148
Stack -2.10External closing pair is C 1040-G 1147
Helix -14.50 8 base pairs.
Multi-loop 3.60External closing pair is T 1041-A 1146
16 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 1125-C 1138
Stack -2.40External closing pair is G 1126-C 1137
Stack -2.20External closing pair is A 1127-T 1136
Stack -1.40External closing pair is C 1128-G 1135
Helix -9.30 5 base pairs.
Hairpin loop 5.60Closing pair is G 1129-T 1134
Stack -2.40External closing pair is T 1051-A 1124
Stack -2.10External closing pair is C 1052-G 1123
Helix -4.50 3 base pairs.
Interior loop 1.10External closing pair is T 1053-A 1122
Stack -3.30External closing pair is C 1055-G 1120
Stack -2.10External closing pair is C 1056-G 1119
Helix -5.40 3 base pairs.
Multi-loop 1.70External closing pair is A 1057-T 1118
18 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 1102-C 1111
Stack -2.40External closing pair is T 1103-A 1110
Helix -4.60 3 base pairs.
Hairpin loop 4.10Closing pair is C 1104-G 1109
Stack -2.10External closing pair is T 1067-A 1098
Stack -2.40External closing pair is G 1068-C 1097
Helix -4.50 3 base pairs.
Interior loop 2.40External closing pair is A 1069-T 1096
Stack -2.10External closing pair is C 1072-G 1094
Stack -2.10External closing pair is T 1073-A 1093
Helix -4.20 3 base pairs.
Bulge loop 0.50External closing pair is G 1074-C 1092
Stack -2.40External closing pair is G 1075-C 1090
Stack -0.90External closing pair is A 1076-T 1089
Helix -3.30 3 base pairs.
Hairpin loop 6.20Closing pair is A 1077-T 1088
Stack -3.40External closing pair is G 1014-C 1030
Helix -3.40 2 base pairs.
Interior loop 1.10External closing pair is C 1015-G 1029
Stack -2.10External closing pair is A 1017-T 1027
Stack -2.20External closing pair is G 1018-C 1026
Stack -1.30External closing pair is T 1019-A 1025
Helix -5.60 4 base pairs.
Hairpin loop 6.20Closing pair is T 1020-G 1024
Stack -1.00External closing pair is T 931-G 964
Stack -1.10External closing pair is A 932-T 963
Stack -1.30External closing pair is T 933-A 962
Helix -3.40 4 base pairs.
Interior loop 2.70External closing pair is A 934-T 961
Stack -1.30External closing pair is T 936-A 958
Stack -2.10External closing pair is A 937-T 957
Stack -3.40External closing pair is G 938-C 956
Helix -6.80 4 base pairs.
Bulge loop 3.70External closing pair is C 939-G 955
Stack -2.40External closing pair is T 940-A 951
Stack -3.30External closing pair is C 941-G 950
Helix -5.70 3 base pairs.
Hairpin loop 3.40Closing pair is C 942-G 949
Interior loop -0.50External closing pair is G 236-C 805
Stack -2.10External closing pair is C 239-G 802
Helix -2.10 2 base pairs.
Interior loop 3.20External closing pair is T 240-A 801
Stack -1.00External closing pair is T 243-A 799
Stack -1.40External closing pair is G 244-T 798
Stack -2.10External closing pair is T 245-A 797
Helix -4.50 4 base pairs.
Interior loop -1.20External closing pair is G 246-C 796
Stack -1.00External closing pair is T 249-A 793
Stack -1.30External closing pair is G 250-T 792
Helix -2.30 3 base pairs.
Multi-loop 2.40External closing pair is A 251-T 791
13 ss bases & 3 closing helices.
Stack -3.40External closing pair is G 283-C 789
Stack -3.30External closing pair is C 284-G 788
Stack -1.40External closing pair is C 285-G 787
Stack -1.30External closing pair is G 286-T 786
Stack -1.10External closing pair is A 287-T 785
Stack -1.30External closing pair is T 288-A 784
Helix -11.80 7 base pairs.
Interior loop 1.20External closing pair is A 289-T 783
Stack -0.90External closing pair is T 291-A 781
Stack -1.30External closing pair is T 292-A 780
Stack -1.40External closing pair is A 293-T 779
Helix -3.60 4 base pairs.
Multi-loop 2.80External closing pair is T 294-G 778
4 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 454-T 776
Stack -2.40External closing pair is C 455-G 775
Stack -2.40External closing pair is G 456-C 774
Helix -7.00 4 base pairs.
Bulge loop 3.80External closing pair is A 457-T 773
Stack -0.90External closing pair is A 458-T 770
Stack -1.10External closing pair is A 459-T 769
Stack -2.10External closing pair is T 460-A 768
Stack -3.30External closing pair is G 461-C 767
Helix -7.40 5 base pairs.
Multi-loop 0.90External closing pair is G 462-C 766
16 ss bases & 3 closing helices.
Stack -2.20External closing pair is G 618-C 763
Stack -1.30External closing pair is T 619-A 762
Stack -0.50External closing pair is T 620-G 761
Stack -1.00External closing pair is T 621-G 760
Stack -0.90External closing pair is A 622-T 759
Stack -1.10External closing pair is A 623-T 758
Stack -2.10External closing pair is T 624-A 757
Stack -2.40External closing pair is G 625-C 756
Stack -2.20External closing pair is A 626-T 755
Helix -13.70 10 base pairs.
Bulge loop 5.20External closing pair is C 627-G 754
Stack -1.10External closing pair is A 628-T 745
Stack -1.00External closing pair is T 629-A 744
Stack -1.30External closing pair is G 630-T 743
Stack -2.10External closing pair is A 631-T 742
Stack -3.30External closing pair is G 632-C 741
Stack -2.40External closing pair is G 633-C 740
Stack -0.90External closing pair is A 634-T 739
Helix -12.10 8 base pairs.
Interior loop 3.80External closing pair is A 635-T 738
Stack -1.50External closing pair is T 638-G 736
Stack -2.40External closing pair is C 639-G 735
Stack -3.30External closing pair is G 640-C 734
Helix -7.20 4 base pairs.
Multi-loop 2.70External closing pair is G 641-C 733
10 ss bases & 3 closing helices.
Stack -2.40External closing pair is T 669-A 730
Stack -2.10External closing pair is C 670-G 729
Stack -0.90External closing pair is T 671-A 728
Helix -5.40 4 base pairs.
Bulge loop 1.40External closing pair is T 672-A 727
Stack -2.10External closing pair is C 674-G 726
Stack -0.90External closing pair is A 675-T 725
Helix -3.00 3 base pairs.
Multi-loop 3.90External closing pair is A 676-T 724
18 ss bases & 3 closing helices.
Stack -2.50External closing pair is G 702-T 720
Stack -2.10External closing pair is C 703-G 719
Stack -2.10External closing pair is T 704-A 718
Stack -2.20External closing pair is G 705-C 717
Helix -8.90 5 base pairs.
Hairpin loop 6.10Closing pair is T 706-A 716
Stack -2.10External closing pair is T 681-A 690
Stack -3.40External closing pair is G 682-C 689
Helix -5.50 3 base pairs.
Hairpin loop 4.10Closing pair is C 683-G 688
Stack -0.90External closing pair is A 645-T 663
Stack -0.90External closing pair is A 646-T 662
Stack -2.10External closing pair is A 647-T 661
Stack -2.50External closing pair is G 648-C 660
Stack -0.60External closing pair is T 649-G 659
Stack -0.90External closing pair is T 650-A 658
Helix -7.90 7 base pairs.
Hairpin loop 4.80Closing pair is T 651-A 657
Stack -2.10External closing pair is C 474-G 614
Stack -0.90External closing pair is A 475-T 613
Stack -2.20External closing pair is A 476-T 612
Stack -2.10External closing pair is C 477-G 611
Stack -2.10External closing pair is A 478-T 610
Helix -9.40 6 base pairs.
Multi-loop 2.60External closing pair is G 479-C 609
26 ss bases & 3 closing helices.
Stack -3.30External closing pair is G 519-C 589
Stack -2.20External closing pair is G 520-C 588
Stack -1.00External closing pair is T 521-A 587
Stack -1.30External closing pair is G 522-T 586
Helix -7.80 5 base pairs.
Bulge loop 3.80External closing pair is A 523-T 585
Stack -2.10External closing pair is A 524-T 582
Stack -3.40External closing pair is G 525-C 581
Helix -5.50 3 base pairs.
Interior loop 4.10External closing pair is C 526-G 580
Stack -0.90External closing pair is A 535-T 569
Stack -2.20External closing pair is A 536-T 568
Stack -2.10External closing pair is C 537-G 567
Stack -0.90External closing pair is A 538-T 566
Stack -0.90External closing pair is A 539-T 565
Helix -7.00 6 base pairs.
Interior loop 1.10External closing pair is A 540-T 564
Stack -2.40External closing pair is C 542-G 562
Stack -2.40External closing pair is G 543-C 561
Stack -0.60External closing pair is A 544-T 560
Stack -2.50External closing pair is G 545-T 559
Helix -7.90 5 base pairs.
Bulge loop 1.40External closing pair is C 546-G 558
Stack -2.40External closing pair is G 547-C 556
Helix -2.40 2 base pairs.
Hairpin loop 5.10Closing pair is A 548-T 555
Stack -1.30External closing pair is T 486-A 517
Stack -1.10External closing pair is A 487-T 516
Stack -0.90External closing pair is T 488-A 515
Stack -0.90External closing pair is T 489-A 514
Stack -1.30External closing pair is T 490-A 513
Stack -1.40External closing pair is T 491-G 512
Stack -3.30External closing pair is G 492-C 511
Helix -10.20 8 base pairs.
Hairpin loop 5.90Closing pair is G 493-C 510
Stack -3.30External closing pair is C 297-G 452
Helix -3.30 2 base pairs.
Interior loop 1.10External closing pair is C 298-G 451
Stack -0.90External closing pair is T 300-A 449
Stack -0.90External closing pair is T 301-A 448
Stack -0.90External closing pair is T 302-A 447
Stack -2.40External closing pair is T 303-A 446
Stack -2.10External closing pair is C 304-G 445
Helix -7.20 6 base pairs.
Interior loop 3.20External closing pair is A 305-T 444
Stack -1.00External closing pair is T 307-G 441
Stack -1.40External closing pair is A 308-T 440
Stack -0.60External closing pair is T 309-G 439
Stack -1.30External closing pair is T 310-A 438
Helix -4.30 5 base pairs.
Multi-loop 2.70External closing pair is A 311-T 437
22 ss bases & 3 closing helices.
Stack -2.10External closing pair is C 353-G 423
Stack -0.90External closing pair is T 354-A 422
Stack -0.90External closing pair is T 355-A 421
Stack -2.10External closing pair is T 356-A 420
Helix -6.00 5 base pairs.
Bulge loop 0.40External closing pair is G 357-C 419
Bulge loop 0.50External closing pair is C 358-G 417
Stack -2.10External closing pair is C 359-G 415
Stack -0.90External closing pair is T 360-A 414
Stack -2.40External closing pair is T 361-A 413
Helix -5.40 4 base pairs.
Interior loop 0.50External closing pair is C 362-G 412
Stack -2.10External closing pair is C 364-G 410
Stack -0.90External closing pair is T 365-A 409
Stack -1.00External closing pair is T 366-A 408
Stack -1.30External closing pair is G 367-T 407
Stack -1.10External closing pair is A 368-T 406
Stack -1.00External closing pair is T 369-A 405
Stack -1.30External closing pair is G 370-T 404
Helix -8.70 8 base pairs.
Multi-loop 2.20External closing pair is A 371-T 403
10 ss bases & 3 closing helices.
Stack -2.20External closing pair is A 389-T 400
Stack -3.30External closing pair is C 390-G 399
Helix -5.50 3 base pairs.
Hairpin loop 3.90Closing pair is C 391-G 398
Stack -2.20External closing pair is G 373-C 381
Helix -2.20 2 base pairs.
Hairpin loop 4.80Closing pair is T 374-A 380
Stack -0.90External closing pair is T 313-A 344
Stack -2.10External closing pair is T 314-A 343
Stack -2.20External closing pair is G 315-C 342
Stack -2.40External closing pair is T 316-A 341
Stack -2.10External closing pair is C 317-G 340
Helix -9.70 6 base pairs.
Hairpin loop 6.70Closing pair is T 318-G 339
Stack -1.00External closing pair is T 256-A 274
Stack -2.10External closing pair is G 257-T 273
Stack -2.40External closing pair is G 258-C 272
Helix -5.50 4 base pairs.
Bulge loop 1.70External closing pair is A 259-T 271
Stack -2.50External closing pair is G 261-C 270
Stack -0.60External closing pair is T 262-G 269
Helix -3.10 3 base pairs.
Hairpin loop 5.30Closing pair is T 263-A 268
Stack -1.00External closing pair is T 96-A 176
Stack -2.50External closing pair is G 97-T 175
Stack -2.10External closing pair is C 98-G 174
Stack -2.10External closing pair is T 99-A 173
Helix -7.70 5 base pairs.
Interior loop 2.70External closing pair is G 100-C 172
Stack -2.40External closing pair is G 108-C 167
Stack -2.10External closing pair is A 109-T 166
Stack -2.20External closing pair is G 110-C 165
Helix -6.70 4 base pairs.
Bulge loop 1.40External closing pair is T 111-A 164
Stack -3.30External closing pair is C 113-G 163
Stack -1.40External closing pair is C 114-G 162
Helix -4.70 3 base pairs.
Bulge loop 3.30External closing pair is G 115-T 161
Stack -3.40External closing pair is G 118-C 160
Stack -2.10External closing pair is C 119-G 159
Helix -5.50 3 base pairs.
Bulge loop 3.80External closing pair is T 120-A 158
Stack -2.40External closing pair is T 123-A 157
Stack -2.10External closing pair is C 124-G 156
Stack -1.00External closing pair is T 125-G 155
Stack -1.10External closing pair is A 126-T 154
Helix -6.60 5 base pairs.
Interior loop 1.10External closing pair is T 127-A 153
Stack -2.40External closing pair is C 129-G 151
Stack -2.20External closing pair is G 130-C 150
Helix -4.60 3 base pairs.
Hairpin loop 5.70Closing pair is T 131-A 149
Stack -2.20External closing pair is A 19-T 26
Helix -2.20 2 base pairs.
Hairpin loop 3.40Closing pair is C 20-G 25